Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007342

Physical Location & Seq

Genomic Coordinates Reverse (-)

21467320 .. 21470633

Gene Structure 3314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG222200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGCGATGGCGATGCTCCGATCTGGTGCGCTCCGAGCCGCCCTGCGCGGTGGCTCTCGGTCTTCTGCGCCGCCCAAGCGCTCCTTCTCCTCCTCCGCCGGTCACGACGATGCTTATGAGACGGCCAAGTGGGAGAAGATAACATATTTAGGCATTATTTCATGCACTGGGCTAGCCGTTTACATTCTGTCGAAGGGCCATCATCACTACGAAACACCTCCTGTGAGCTCTCTTCTCGAGCTTTGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016310 GO:0017144 GO:0019637 GO:0019646 GO:0019693 GO:0022900 GO:0022904 GO:0030234 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0050790 GO:0055086 GO:0055114 GO:0065007 GO:0065009 GO:0071704 GO:0072521 GO:0098772 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6A

Protein Analysis

83

Amino Acids

8.94

Weight (kDa)

8.69

Isoelectric Point (pI)

68.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37830 AT4G37830 AT4G37830
fragaria_vesca	FvH4_1g18620
malus_domestica	MD02G1193900.v1.1 MD15G1304000.v1.1
prunus_persica	Prupe.6G213100_v2.0.a1 Prupe.6G213100_v2.0.a1
pyrus_communis	pycom02g15790 pycom15g26700
rosa_chinensis	RchiOBHm_Chr2g0109411
rosa_laevigata	RLG00000017735 RLG00000021665
rosa_multiflora	Rmu_sc0000332.1_g000013 Rmu_sc0026699.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134260
rosa_rugosa	Rorug02G0159800
rosa_samantha	Rh2AG211800 Rh2BG222200 Rh2CG214000 Rh2DG217500 Rh7DG270000
rosa_wichuraiana	Rw1G027160 Rw2G026280 Rw5G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	48
AciI	CCGC	4 cut(s)	39, 48, 71, 96
AcoI	YGGCCR	1 cut(s)	123
AfeI	AGCGCT	1 cut(s)	80
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AluBI	AGCT	2 cut(s)	228, 241
AluI	AGCT	2 cut(s)	228, 241
Alw21I	GWGCWC	1 cut(s)	230
Alw26I	GTCTC	1 cut(s)	113
Ama87I	CYCGRG	1 cut(s)	236
Aor51HI	AGCGCT	1 cut(s)	80
AoxI	GGCC	2 cut(s)	123, 196
AspLEI	GCGC	4 cut(s)	31, 48, 70, 81
AspS9I	GGNCC	1 cut(s)	196
AsuNHI	GCTAGC	1 cut(s)	172
AvaI	CYCGRG	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	230
BccI	CCATC	1 cut(s)	207
BceAI	ACGGC	2 cut(s)	138, 161
BcgI	CGANNNNNNTGC	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	173
BfoI	RGCGCY	1 cut(s)	82
BisI	GCNGC	2 cut(s)	39, 71
BlsI	GCNGC	2 cut(s)	40, 72
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	196
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	2 cut(s)	3, 100
BmtI	GCTAGC	1 cut(s)	176
BmuI	ACTGGG	1 cut(s)	177
BpiI	GAAGAC	1 cut(s)	54
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	2 cut(s)	79, 82
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	2 cut(s)	125, 198
BsiHKAI	GWGCWC	1 cut(s)	230
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	99
BsmAI	GTCTC	1 cut(s)	113
BsmBI	CGTCTC	1 cut(s)	113
BsnI	GGCC	2 cut(s)	125, 198
BsoBI	CYCGRG	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	1 cut(s)	20
BspACI	CCGC	4 cut(s)	39, 48, 71, 96
BspANI	GGCC	2 cut(s)	125, 198
BspFNI	CGCG	1 cut(s)	48
BspOI	GCTAGC	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	172
BssAI	RCCGGY	1 cut(s)	98
BssMI	GATC	1 cut(s)	20
Bst6I	CTCTTC	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	174
BstFNI	CGCG	1 cut(s)	48
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	4 cut(s)	31, 48, 70, 81
BstKTI	GATC	1 cut(s)	23
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 76
BstUI	CGCG	1 cut(s)	48
BstV2I	GAAGAC	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	125, 198
BtgZI	GCGATG	2 cut(s)	20, 26
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	1 cut(s)	174
CfoI	GCGC	4 cut(s)	31, 48, 70, 81
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	196
CviAII	CATG	1 cut(s)	162
CviJI	RGCY	8 cut(s)	38, 54, 125, 172, 176, 198, 228, 241
CviKI_1	RGCY	8 cut(s)	38, 54, 125, 172, 176, 198, 228, 241
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
EaeI	YGGCCR	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
EciI	GGCGGA	1 cut(s)	85
Ecl136II	GAGCTC	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	230
Eco47III	AGCGCT	1 cut(s)	80
Eco53kI	GAGCTC	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	230
Esp3I	CGTCTC	1 cut(s)	113
FaeI	CATG	1 cut(s)	165
FaiI	YATR	3 cut(s)	117, 145, 163
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FatI	CATG	1 cut(s)	161
Fnu4HI	GCNGC	2 cut(s)	39, 71
FriOI	GRGCYC	1 cut(s)	230
Fsp4HI	GCNGC	2 cut(s)	39, 71
FspBI	CTAG	1 cut(s)	173
GlaI	GCGC	4 cut(s)	30, 47, 69, 80
GluI	GCNGC	2 cut(s)	39, 71
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	2 cut(s)	125, 198
HapII	CCGG	1 cut(s)	99
HhaI	GCGC	4 cut(s)	31, 48, 70, 81
Hin1II	CATG	1 cut(s)	165
Hin6I	GCGC	4 cut(s)	29, 46, 68, 79
HinP1I	GCGC	4 cut(s)	29, 46, 68, 79
HpaII	CCGG	1 cut(s)	99
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	20, 35
Hpy188III	TCNNGA	2 cut(s)	104, 236
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	94, 187
HpyCH4V	TGCA	1 cut(s)	165
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 76
Hsp92II	CATG	1 cut(s)	165
HspAI	GCGC	4 cut(s)	29, 46, 68, 79
Kzo9I	GATC	1 cut(s)	20
LmnI	GCTCC	3 cut(s)	21, 36, 86
LpnPI	CCDG	5 cut(s)	9, 56, 112, 153, 234
LweI	GCATC	2 cut(s)	3, 100
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MboII	GAAGA	3 cut(s)	54, 148, 224
MhlI	GDGCHC	1 cut(s)	230
MnlI	CCTC	3 cut(s)	100, 103, 228
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	1 cut(s)	99
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	2 cut(s)	35, 76
NdeII	GATC	1 cut(s)	20
NheI	GCTAGC	1 cut(s)	172
NlaIII	CATG	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	101
PaeR7I	CTCGAG	1 cut(s)	236
PkrI	GCNGC	2 cut(s)	40, 72
Psp124BI	GAGCTC	1 cut(s)	230
PspPI	GGNCC	1 cut(s)	196
RseI	CAYNNNNRTG	1 cut(s)	108
SacI	GAGCTC	1 cut(s)	230
SatI	GCNGC	2 cut(s)	39, 71
Sau3AI	GATC	1 cut(s)	20
Sau96I	GGNCC	1 cut(s)	196
SduI	GDGCHC	1 cut(s)	230
SetI	ASST	3 cut(s)	220, 230, 243
SfaNI	GCATC	2 cut(s)	3, 100
Sfr274I	CTCGAG	1 cut(s)	236
SlaI	CTCGAG	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
SsiI	CCGC	4 cut(s)	39, 48, 71, 96
SspMI	CTAG	1 cut(s)	173
SstI	GAGCTC	1 cut(s)	230
TaqI	TCGA	2 cut(s)	191, 237
TaqII	GACCGA	1 cut(s)	48
TauI	GCSGC	2 cut(s)	41, 73
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	150
TspRI	CASTG	1 cut(s)	172
XhoI	CTCGAG	1 cut(s)	236
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.