Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007342

Physical Location & Seq

Genomic Coordinates Reverse (-)

40493148 .. 40496993

Gene Structure 3846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G026280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGTGAATGTGATGCTCCGATATGGTGCTCTCCGAACCGCCCTGGGTTGTGGCTCTCGGTCCTCTGCTCCGCCCAAGCGGCCCTTCTCCTCCACTGCCGGCCACAACCATGCTTTGTTGAGTGCCGCGAAGTGGAGCAAAAGAGGATTCTGGAGTTCTGCAACTCTCCGACTCCCTCAACTCCACCTACAAGATTGTCTGTTGGGGGTGTTTGAGCCCAAAAATATTTTTGGTAAGATCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016310 GO:0017144 GO:0019637 GO:0019646 GO:0019693 GO:0022900 GO:0022904 GO:0030234 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0050790 GO:0055086 GO:0055114 GO:0065007 GO:0065009 GO:0071704 GO:0072521 GO:0098772 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6A

Protein Analysis

81

Amino Acids

8.9

Weight (kDa)

11.01

Isoelectric Point (pI)

67.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37830 AT4G37830 AT4G37830
fragaria_vesca	FvH4_1g18620
malus_domestica	MD02G1193900.v1.1 MD15G1304000.v1.1
prunus_persica	Prupe.6G213100_v2.0.a1 Prupe.6G213100_v2.0.a1
pyrus_communis	pycom02g15790 pycom15g26700
rosa_chinensis	RchiOBHm_Chr2g0109411
rosa_laevigata	RLG00000017735 RLG00000021665
rosa_multiflora	Rmu_sc0000332.1_g000013 Rmu_sc0026699.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134260
rosa_rugosa	Rorug02G0159800
rosa_samantha	Rh2AG211800 Rh2BG222200 Rh2CG214000 Rh2DG217500 Rh7DG270000
rosa_wichuraiana	Rw1G027160 Rw2G026280 Rw5G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	128
AciI	CCGC	4 cut(s)	39, 71, 79, 126
AcoI	YGGCCR	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	132
AjnI	CCWGG	1 cut(s)	42
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
Alw21I	GWGCWC	1 cut(s)	31
AoxI	GGCC	2 cut(s)	80, 100
AspS9I	GGNCC	2 cut(s)	60, 81
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	44
BglI	GCCNNNNNGGC	1 cut(s)	79
BglII	AGATCT	1 cut(s)	237
BisI	GCNGC	2 cut(s)	80, 126
BlsI	GCNGC	2 cut(s)	81, 127
Bme1390I	CCNGG	1 cut(s)	44
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	2 cut(s)	60, 81
BmrFI	CCNGG	1 cut(s)	44
BmsI	GCATC	1 cut(s)	3
BpmI	CTGGAG	1 cut(s)	172
BsaJI	CCNNGG	2 cut(s)	42, 43
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse118I	RCCGGY	1 cut(s)	98
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	2 cut(s)	42, 43
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseRI	GAGGAG	1 cut(s)	79
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	82, 102
BsiHKAI	GWGCWC	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	132
BsnI	GGCC	2 cut(s)	82, 102
Bsp1286I	GDGCHC	2 cut(s)	31, 219
Bsp143I	GATC	1 cut(s)	237
BspACI	CCGC	4 cut(s)	39, 71, 79, 126
BspANI	GGCC	2 cut(s)	82, 102
BspFNI	CGCG	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	42, 43
BssMI	GATC	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	100
BstFNI	CGCG	1 cut(s)	128
BstKTI	GATC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstNI	CCWGG	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	42
BstUI	CGCG	1 cut(s)	128
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
BsuRI	GGCC	2 cut(s)	82, 102
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	2 cut(s)	60, 81
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	4 cut(s)	54, 82, 102, 217
CviKI_1	RGCY	4 cut(s)	54, 82, 102, 217
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
EaeI	YGGCCR	1 cut(s)	100
EciI	GGCGGA	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	219
FaeI	CATG	1 cut(s)	113
FaiI	YATR	2 cut(s)	24, 111
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FatI	CATG	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	80, 126
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	2 cut(s)	80, 126
GluI	GCNGC	2 cut(s)	80, 126
GsuI	CTGGAG	1 cut(s)	172
HaeIII	GGCC	2 cut(s)	82, 102
HapII	CCGG	1 cut(s)	99
Hin1II	CATG	1 cut(s)	113
HinfI	GANTC	2 cut(s)	147, 171
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	3 cut(s)	20, 35, 170
Hpy188III	TCNNGA	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	94
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
Hsp92II	CATG	1 cut(s)	113
KroI	GCCGGC	1 cut(s)	98
KroNI	GCCGGC	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	237
LmnI	GCTCC	3 cut(s)	21, 73, 135
LpnPI	CCDG	4 cut(s)	29, 56, 112, 136
LweI	GCATC	1 cut(s)	3
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	2 cut(s)	31, 219
MlyI	GAGTC	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	4 cut(s)	73, 100, 137, 186
MroNI	GCCGGC	1 cut(s)	98
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	44
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	79
NaeI	GCCGGC	1 cut(s)	100
NdeII	GATC	1 cut(s)	237
NgoMIV	GCCGGC	1 cut(s)	98
NlaIII	CATG	1 cut(s)	113
PasI	CCCWGGG	1 cut(s)	43
PdiI	GCCGGC	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	147
PkrI	GCNGC	2 cut(s)	81, 127
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspPI	GGNCC	2 cut(s)	60, 81
PsuI	RGATCY	1 cut(s)	237
RseI	CAYNNNNRTG	1 cut(s)	108
SatI	GCNGC	2 cut(s)	80, 126
Sau3AI	GATC	1 cut(s)	237
Sau96I	GGNCC	2 cut(s)	60, 81
SchI	GAGTC	1 cut(s)	165
ScrFI	CCNGG	1 cut(s)	44
SduI	GDGCHC	2 cut(s)	31, 219
SetI	ASST	1 cut(s)	189
SfaNI	GCATC	1 cut(s)	3
SgeI	CNNG	9 cut(s)	55, 56, 69, 88, 111, 122, 139, 163, 203
SinI	GGWCC	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	108
SsiI	CCGC	4 cut(s)	39, 71, 79, 126
SspI	AATATT	1 cut(s)	226
StyD4I	CCNGG	1 cut(s)	42
TaqII	GACCGA	1 cut(s)	48
TauI	GCSGC	2 cut(s)	82, 128
TfiI	GAWTC	1 cut(s)	147
TscAI	CASTG	1 cut(s)	100
TspRI	CASTG	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.