Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007342

Physical Location & Seq

Genomic Coordinates Reverse (-)

39094354 .. 39097171

Gene Structure 2818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G026840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGCTCCAATTTGGTGCGCTCCGAACAGCCCTGCGAGGTGGCTCTCGGTCCTCTGCTCTGCCCAAGTGGCCCTTCTCCTCCACCGCCGGCCACAACTATGCTTGCACTGCCAGGCGGGCTACCGCTCGAACCCTGGACCGCCCCCAGATCACCGCTGACGCTCCTCCACGGCCGTTTCTCTATCACCTCAACTACAACCATCCAAATGCGAATTCATCATATATGGAGAGACCCCACCGCCACGAGCAGCATTGGCAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016310 GO:0017144 GO:0019637 GO:0019646 GO:0019693 GO:0022900 GO:0022904 GO:0030234 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0050790 GO:0055086 GO:0055114 GO:0065007 GO:0065009 GO:0071704 GO:0072521 GO:0098772 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6A

Protein Analysis

87

Amino Acids

9.93

Weight (kDa)

10.84

Isoelectric Point (pI)

83.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37830 AT4G37830 AT4G37830
fragaria_vesca	FvH4_1g18620
malus_domestica	MD02G1193900.v1.1 MD15G1304000.v1.1
prunus_persica	Prupe.6G213100_v2.0.a1 Prupe.6G213100_v2.0.a1
pyrus_communis	pycom02g15790 pycom15g26700
rosa_chinensis	RchiOBHm_Chr2g0109411
rosa_laevigata	RLG00000017735 RLG00000021665
rosa_multiflora	Rmu_sc0000332.1_g000013 Rmu_sc0026699.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134260
rosa_rugosa	Rorug02G0159800
rosa_samantha	Rh2AG211800 Rh2BG222200 Rh2CG214000 Rh2DG217500 Rh7DG270000
rosa_wichuraiana	Rw1G027160 Rw2G026280 Rw5G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	125
AciI	CCGC	6 cut(s)	84, 115, 123, 139, 153, 238
AcoI	YGGCCR	2 cut(s)	88, 170
AcsI	RAATTY	1 cut(s)	211
AjnI	CCWGG	2 cut(s)	110, 132
AjuI	GAANNNNNNNTTGG	4 cut(s)	56, 88, 196, 228
Alw26I	GTCTC	1 cut(s)	223
AoxI	GGCC	3 cut(s)	68, 88, 170
ApeKI	GCWGC	1 cut(s)	247
ApoI	RAATTY	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	3 cut(s)	48, 69, 136
AsuHPI	GGTGA	2 cut(s)	142, 176
AvaII	GGWCC	2 cut(s)	48, 136
BauI	CACGAG	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	1 cut(s)	207
BceAI	ACGGC	2 cut(s)	157, 185
BciT130I	CCWGG	2 cut(s)	112, 134
BcoDI	GTCTC	1 cut(s)	223
BglI	GCCNNNNNGGC	2 cut(s)	67, 116
BisI	GCNGC	1 cut(s)	248
BlsI	GCNGC	1 cut(s)	249
Bme1390I	CCNGG	2 cut(s)	112, 134
Bme18I	GGWCC	2 cut(s)	48, 136
BmgT120I	GGNCC	3 cut(s)	48, 69, 136
BmrFI	CCNGG	2 cut(s)	112, 134
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	2 cut(s)	132, 167
Bse118I	RCCGGY	1 cut(s)	86
BseBI	CCWGG	2 cut(s)	112, 134
BseDI	CCNNGG	2 cut(s)	132, 167
BseGI	GGATG	1 cut(s)	199
BseRI	GAGGAG	2 cut(s)	67, 153
BseX3I	CGGCCG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	259
Bsh1285I	CGRYCG	1 cut(s)	173
BshFI	GGCC	3 cut(s)	70, 90, 172
BsiEI	CGRYCG	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	223
BsnI	GGCC	3 cut(s)	70, 90, 172
Bso31I	GGTCTC	1 cut(s)	223
Bsp143I	GATC	1 cut(s)	147
BspACI	CCGC	6 cut(s)	84, 115, 123, 139, 153, 238
BspANI	GGCC	3 cut(s)	70, 90, 172
BspTNI	GGTCTC	1 cut(s)	223
BsrBI	CCGCTC	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	132, 167
BssMI	GATC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	242
Bst2BI	CACGAG	1 cut(s)	242
Bst2UI	CCWGG	2 cut(s)	112, 134
BstC8I	GCNNGC	3 cut(s)	88, 103, 117
BstDSI	CCRYGG	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	147
BstMCI	CGRYCG	1 cut(s)	173
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 107, 116, 253
BstNI	CCWGG	2 cut(s)	112, 134
BstSCI	CCNGG	2 cut(s)	110, 132
BstV1I	GCAGC	1 cut(s)	259
BstZI	CGGCCG	1 cut(s)	170
BsuRI	GGCC	3 cut(s)	70, 90, 172
BtgI	CCRYGG	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	199
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	3 cut(s)	88, 103, 117
CfoI	GCGC	1 cut(s)	19
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	3 cut(s)	48, 69, 136
CseI	GACGC	1 cut(s)	167
CviJI	RGCY	6 cut(s)	29, 42, 70, 90, 119, 172
CviKI_1	RGCY	6 cut(s)	29, 42, 70, 90, 119, 172
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
EaeI	YGGCCR	2 cut(s)	88, 170
EagI	CGGCCG	1 cut(s)	170
EclXI	CGGCCG	1 cut(s)	170
Eco31I	GGTCTC	1 cut(s)	223
Eco47I	GGWCC	2 cut(s)	48, 136
Eco52I	CGGCCG	1 cut(s)	170
EcoRI	GAATTC	1 cut(s)	211
EcoRII	CCWGG	2 cut(s)	110, 132
FaiI	YATR	4 cut(s)	99, 220, 222, 224
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FauI	CCCGC	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	248
FokI	GGATG	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	248
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	1 cut(s)	248
HaeIII	GGCC	3 cut(s)	70, 90, 172
HapII	CCGG	1 cut(s)	87
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	19
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	2 cut(s)	142, 176
Hpy188I	TCNGA	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	82
HpyCH4V	TGCA	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 107, 116, 253
HspAI	GCGC	1 cut(s)	17
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	147
LmnI	GCTCC	3 cut(s)	9, 24, 166
LpnPI	CCDG	7 cut(s)	44, 97, 100, 119, 124, 146, 158
Lsp1109I	GCAGC	1 cut(s)	259
MalI	GATC	1 cut(s)	149
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	1 cut(s)	147
MluCI	AATT	2 cut(s)	8, 211
MnlI	CCTC	5 cut(s)	29, 61, 88, 174, 197
MroNI	GCCGGC	1 cut(s)	86
MslI	CAYNNNNRTG	2 cut(s)	96, 204
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	2 cut(s)	112, 134
MvaI	CCWGG	2 cut(s)	112, 134
MwoI	GCNNNNNNNGC	4 cut(s)	67, 107, 116, 253
NaeI	GCCGGC	1 cut(s)	88
NdeII	GATC	1 cut(s)	147
NgoMIV	GCCGGC	1 cut(s)	86
PdiI	GCCGGC	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	249
Psp6I	CCWGG	2 cut(s)	110, 132
PspGI	CCWGG	2 cut(s)	110, 132
PspPI	GGNCC	3 cut(s)	48, 69, 136
RseI	CAYNNNNRTG	2 cut(s)	96, 204
SatI	GCNGC	1 cut(s)	248
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	3 cut(s)	48, 69, 136
ScrFI	CCNGG	2 cut(s)	112, 134
SetI	ASST	2 cut(s)	40, 189
SinI	GGWCC	2 cut(s)	48, 136
SmiMI	CAYNNNNRTG	2 cut(s)	96, 204
Sse9I	AATT	2 cut(s)	8, 211
SsiI	CCGC	6 cut(s)	84, 115, 123, 139, 153, 238
StyD4I	CCNGG	2 cut(s)	110, 132
TaqI	TCGA	1 cut(s)	127
TaqII	GACCGA	1 cut(s)	36
TasI	AATT	2 cut(s)	8, 211
TscAI	CASTG	1 cut(s)	112
TseI	GCWGC	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	204
TspRI	CASTG	1 cut(s)	112
VpaK11BI	GGWCC	2 cut(s)	48, 136
XapI	RAATTY	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.