Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007342

Physical Location & Seq

Genomic Coordinates Forward (+)

22114649 .. 22116664

Gene Structure 2016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G213100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCGATGTCGATGGTCCGATCTGCTGCCCTTCGAACCGCCTTGCGCAGTGGCTCCCGATCCTCTGCTCCTCCAAAGCGTTCCTTCTCCTCCTCTGCTGCTCACGACGATGCCCATGAGACGGCCAAGTGGGAGAAGATTACTTACTTAGGCATTGCTTCATGCACTATTTTCGCGTTTGTTGTCCTGTCAAAGCCTCATCCTCACTACGACGAGCCTCCTCCGTACCCATATTTACACATCCGCAATAAGGAGTTCCCATGGGACAGATTCATTAGACTACCTTGGATTTCATTGGATATGAATTGGCTGCACTTGTTTCACATTATGAATTCTGGATCAAAATCCTTGTGGCAAGTTGTGTTATGTTTTTCTGTAAACATTGAAACCCATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016310 GO:0017144 GO:0019637 GO:0019646 GO:0019693 GO:0022900 GO:0022904 GO:0030234 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0050790 GO:0055086 GO:0055114 GO:0065007 GO:0065009 GO:0071704 GO:0072521 GO:0098772 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6A

Protein Analysis

133

Amino Acids

15.2

Weight (kDa)

9.47

Isoelectric Point (pI)

74.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37830 AT4G37830 AT4G37830
fragaria_vesca	FvH4_1g18620
malus_domestica	MD02G1193900.v1.1 MD15G1304000.v1.1
prunus_persica	Prupe.6G213100_v2.0.a1 Prupe.6G213100_v2.0.a1
pyrus_communis	pycom02g15790 pycom15g26700
rosa_chinensis	RchiOBHm_Chr2g0109411
rosa_laevigata	RLG00000017735 RLG00000021665
rosa_multiflora	Rmu_sc0000332.1_g000013 Rmu_sc0026699.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134260
rosa_rugosa	Rorug02G0159800
rosa_samantha	Rh2AG211800 Rh2BG222200 Rh2CG214000 Rh2DG217500 Rh7DG270000
rosa_wichuraiana	Rw1G027160 Rw2G026280 Rw5G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	47
AccII	CGCG	1 cut(s)	176
AciI	CCGC	2 cut(s)	39, 244
AclWI	GGATC	2 cut(s)	54, 346
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	331
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	2 cut(s)	121, 250
AgsI	TTSAA	1 cut(s)	386
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	2 cut(s)	54, 346
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	3 cut(s)	26, 98, 310
ApoI	RAATTY	1 cut(s)	331
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	16
AsuII	TTCGAA	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	16
BarI	GAAGNNNNNNTAC	2 cut(s)	128, 160
BbvI	GCAGC	3 cut(s)	13, 85, 297
BccI	CCATC	1 cut(s)	7
BceAI	ACGGC	1 cut(s)	138
BcgI	CGANNNNNNTGC	2 cut(s)	154, 188
BcoDI	GTCTC	1 cut(s)	113
BisI	GCNGC	3 cut(s)	27, 99, 311
BlsI	GCNGC	3 cut(s)	28, 100, 312
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	55
BmsI	GCATC	1 cut(s)	100
Bpu14I	TTCGAA	1 cut(s)	34
BsaBI	GATNNNNATC	1 cut(s)	343
BsaJI	CCNNGG	2 cut(s)	260, 284
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 250
Bse3DI	GCAATG	1 cut(s)	153
Bse8I	GATNNNNATC	1 cut(s)	343
BseDI	CCNNGG	2 cut(s)	260, 284
BseGI	GGATG	2 cut(s)	199, 240
BseJI	GATNNNNATC	1 cut(s)	343
BseLI	CCNNNNNNNGG	2 cut(s)	121, 250
BseMI	GCAATG	1 cut(s)	153
BseRI	GAGGAG	4 cut(s)	60, 79, 82, 210
BseXI	GCAGC	3 cut(s)	13, 85, 297
BsgI	GTGCAG	1 cut(s)	296
Bsh1236I	CGCG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	2 cut(s)	121, 250
BsmAI	GTCTC	1 cut(s)	113
BsmBI	CGTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	1 cut(s)	125
Bsp119I	TTCGAA	1 cut(s)	34
Bsp143I	GATC	3 cut(s)	20, 59, 338
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	2 cut(s)	39, 244
BspANI	GGCC	1 cut(s)	125
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	55
BspPI	GGATC	2 cut(s)	54, 346
BspT104I	TTCGAA	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	153
BssECI	CCNNGG	2 cut(s)	260, 284
BssMI	GATC	3 cut(s)	20, 59, 338
BssT1I	CCWWGG	2 cut(s)	260, 284
BstBI	TTCGAA	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	148
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	2 cut(s)	199, 240
BstFNI	CGCG	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	3 cut(s)	23, 62, 341
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	3 cut(s)	20, 59, 338
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	3 cut(s)	13, 85, 297
BsuRI	GGCC	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	260
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	199, 240
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	55
CfoI	GCGC	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	3 cut(s)	116, 162, 261
CviJI	RGCY	5 cut(s)	54, 125, 196, 217, 310
CviKI_1	RGCY	5 cut(s)	54, 125, 196, 217, 310
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	1 cut(s)	148
DpnI	GATC	3 cut(s)	22, 61, 340
DpnII	GATC	3 cut(s)	20, 59, 338
EaeI	YGGCCR	1 cut(s)	123
Eco130I	CCWWGG	2 cut(s)	260, 284
Eco47I	GGWCC	1 cut(s)	16
EcoRI	GAATTC	1 cut(s)	331
EcoT14I	CCWWGG	2 cut(s)	260, 284
ErhI	CCWWGG	2 cut(s)	260, 284
Esp3I	CGTCTC	1 cut(s)	113
FaeI	CATG	3 cut(s)	119, 165, 264
FaiI	YATR	8 cut(s)	117, 163, 232, 262, 302, 329, 367, 393
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	3 cut(s)	115, 161, 260
Fnu4HI	GCNGC	3 cut(s)	27, 99, 311
FokI	GGATG	2 cut(s)	186, 227
Fsp4HI	GCNGC	3 cut(s)	27, 99, 311
FspI	TGCGCA	1 cut(s)	47
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	3 cut(s)	27, 99, 311
HaeIII	GGCC	1 cut(s)	125
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	3 cut(s)	119, 165, 264
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HinfI	GANTC	1 cut(s)	270
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	1 cut(s)	20
Hpy188III	TCNNGA	3 cut(s)	57, 104, 336
Hpy8I	GTNNAC	1 cut(s)	379
Hpy99I	CGWCG	2 cut(s)	110, 215
HpyAV	CCTTC	2 cut(s)	41, 94
HpyCH4V	TGCA	2 cut(s)	165, 313
HpyF3I	CTNAG	1 cut(s)	148
Hsp92II	CATG	3 cut(s)	119, 165, 264
HspAI	GCGC	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	20, 59, 338
LmnI	GCTCC	2 cut(s)	59, 73
LpnPI	CCDG	2 cut(s)	200, 321
Lsp1109I	GCAGC	3 cut(s)	13, 85, 297
LweI	GCATC	1 cut(s)	100
MalI	GATC	3 cut(s)	22, 61, 340
MboI	GATC	3 cut(s)	20, 59, 338
MboII	GAAGA	1 cut(s)	148
MluCI	AATT	2 cut(s)	304, 331
MnlI	CCTC	8 cut(s)	73, 81, 100, 103, 207, 213, 228, 231
MslI	CAYNNNNRTG	1 cut(s)	108
MvnI	CGCG	1 cut(s)	176
NcoI	CCATGG	1 cut(s)	260
NdeII	GATC	3 cut(s)	20, 59, 338
NlaIII	CATG	3 cut(s)	119, 165, 264
NlaIV	GGNNCC	1 cut(s)	55
NsbI	TGCGCA	1 cut(s)	47
NspV	TTCGAA	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	270
PkrI	GCNGC	3 cut(s)	28, 100, 312
PspN4I	GGNNCC	1 cut(s)	55
PspPI	GGNCC	1 cut(s)	16
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
RseI	CAYNNNNRTG	1 cut(s)	108
SatI	GCNGC	3 cut(s)	27, 99, 311
Sau3AI	GATC	3 cut(s)	20, 59, 338
Sau96I	GGNCC	1 cut(s)	16
SetI	ASST	1 cut(s)	286
SfaNI	GCATC	1 cut(s)	100
SfuI	TTCGAA	1 cut(s)	34
SinI	GGWCC	1 cut(s)	16
SmiMI	CAYNNNNRTG	1 cut(s)	108
Sse9I	AATT	2 cut(s)	304, 331
SsiI	CCGC	2 cut(s)	39, 244
StyI	CCWWGG	2 cut(s)	260, 284
TaqI	TCGA	2 cut(s)	11, 34
TasI	AATT	2 cut(s)	304, 331
TfiI	GAWTC	1 cut(s)	270
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	3 cut(s)	26, 98, 310
TspDTI	ATGAA	5 cut(s)	150, 262, 282, 317, 344
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	16
XapI	RAATTY	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.