Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013383

Physical Location & Seq

Genomic Coordinates Reverse (-)

17922756 .. 17923973

Gene Structure 1218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G38210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGATTCTGGGCTTCAGCAACTCGCATTGTGCCTCTTCTTCATTCTCTGCCGCCTCTTTCAAGCCACTGCCGAAGATGACTGGAAGATAGCCACAGCCACGCTTTCTAGAGACAGAGACGGCTCCTCCTCCGTCGCTACTGGAGGCGCTTGTGGGTATGGAGATCTGAGGCAGAGCAGCTTTGCCGGCTACAGCGCAGGCCTGAGCGGGAAGCTGTTCAACAGGGGAAGCAGCTGCGGAGCTTGTCTAGAAGTGCGGTGCGTGAACCACATCCGTTGGTGTCTTCAAGGCAGCCCCTCCGTGGTGGTCACCGCCACCGATTTCTGTCCTCCCAATTCGGGACTCTCCTCCGATTACGGAGGTTGGTGCAACTTCCCAAAGGAACACTTGGAACTATCTCATGCCGCCTTCACAGGGATCGCAGAAACCAGAGCTGAGATGATACCTATACAGTATAGGAGGGTCAAGTGTGGGCGGAGAGGCGGGTTGAGATTCAGCTTGAGCGGGAGCTCCCACTTTTTCCAGGTGTTGATAAGCAATGTGGGCCTCGACGGGGAAGTGGTTGGTGTGAAAGTGAAGGGCCACACAACGGCTTGGATCCCAATGGCCAGAAACTGGGGACAGAACTGGCACTCCTCTCTCGATCTCATCGGACAGTCTCTCTCTTTCGAGGTTACTCTCAAAGGCGGCAAAACCATTGCCTCTTATGATGTGGCTCCTCCGTATTGGCGCTTCGGAATGACATACCAAGGAAAGCAGTTCCACTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009628 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0050896 GO:0071944 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

256

Amino Acids

27.86

Weight (kDa)

8.69

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	66 - 152	4.7e-18	Lytic transglycolase
Expansin_C	PF01357	164 - 240	3e-24	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38210
fragaria_vesca	FvH4_2g17030 FvH4_2g17030
malus_domestica	MD05G1143200.v1.1 MD10G1143000.v1.1
prunus_persica	Prupe.8G182000_v2.0.a1
pyrus_communis	pycom05g13770 pycom10g12290
rosa_chinensis	RchiOBHm_Chr6g0281211
rosa_laevigata	RLG00000012985
rosa_multiflora	Rmu_sc0027531.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187220
rosa_rugosa	Rorug06G0139700
rosa_samantha	Rh6AG251600 Rh6BG254900 Rh6CG254400 Rh6DG246200
rosa_wichuraiana	Rw6G021850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	615
AccBSI	CCGCTC	2 cut(s)	207, 504
AclWI	GGATC	3 cut(s)	425, 592, 605
AcoI	YGGCCR	1 cut(s)	606
AfiI	CCNNNNNNNGG	6 cut(s)	301, 338, 414, 553, 589, 615
AgsI	TTSAA	3 cut(s)	62, 220, 287
AjnI	CCWGG	1 cut(s)	522
AloI	GAACNNNNNNTCC	2 cut(s)	617, 649
AluBI	AGCT	7 cut(s)	180, 214, 234, 242, 434, 498, 510
AluI	AGCT	7 cut(s)	180, 214, 234, 242, 434, 498, 510
Alw21I	GWGCWC	1 cut(s)	512
Alw26I	GTCTC	3 cut(s)	105, 111, 663
AlwI	GGATC	3 cut(s)	425, 592, 605
AlwNI	CAGNNNCTG	1 cut(s)	615
AoxI	GGCC	4 cut(s)	199, 544, 580, 606
ApeKI	GCWGC	4 cut(s)	177, 231, 234, 291
Asp700I	GAANNNNTTC	1 cut(s)	215
AspLEI	GCGC	3 cut(s)	149, 197, 732
AspS9I	GGNCC	2 cut(s)	544, 580
AsuHPI	GGTGA	1 cut(s)	301
BalI	TGGCCA	1 cut(s)	608
BamHI	GGATCC	1 cut(s)	597
BanII	GRGCYC	1 cut(s)	512
BarI	GAAGNNNNNNTAC	2 cut(s)	716, 748
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	512
BbvI	GCAGC	4 cut(s)	189, 221, 243, 303
BceAI	ACGGC	2 cut(s)	136, 606
BciT130I	CCWGG	1 cut(s)	524
BcoDI	GTCTC	3 cut(s)	105, 111, 663
BfaI	CTAG	2 cut(s)	108, 248
BfmI	CTRYAG	1 cut(s)	190
BfoI	RGCGCY	2 cut(s)	150, 733
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	7 cut(s)	52, 178, 232, 235, 292, 405, 688
BlsI	GCNGC	7 cut(s)	53, 179, 233, 236, 293, 406, 689
Bme1390I	CCNGG	1 cut(s)	524
BmgT120I	GGNCC	2 cut(s)	544, 580
BmiI	GGNNCC	3 cut(s)	124, 599, 717
BmrFI	CCNGG	1 cut(s)	524
BmrI	ACTGGG	1 cut(s)	625
BmuI	ACTGGG	1 cut(s)	625
BpiI	GAAGAC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	162
Bpu10I	CCTNAGC	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	520
BsaJI	CCNNGG	2 cut(s)	300, 748
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 617, 647
Bsc4I	CCNNNNNNNGG	6 cut(s)	301, 338, 414, 553, 589, 615
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	4 cut(s)	86, 145, 620, 632
Bse3DI	GCAATG	2 cut(s)	544, 696
BseBI	CCWGG	1 cut(s)	524
BseDI	CCNNGG	2 cut(s)	300, 748
BseGI	GGATG	1 cut(s)	270
BseLI	CCNNNNNNNGG	6 cut(s)	301, 338, 414, 553, 589, 615
BseMI	GCAATG	2 cut(s)	544, 696
BseMII	CTCAG	3 cut(s)	158, 194, 426
BseNI	ACTGG	4 cut(s)	86, 145, 620, 632
BseRI	GAGGAG	5 cut(s)	115, 118, 337, 625, 708
BseXI	GCAGC	4 cut(s)	189, 221, 243, 303
BshFI	GGCC	4 cut(s)	201, 546, 582, 608
BsiHKAI	GWGCWC	1 cut(s)	512
BsiSI	CCGG	1 cut(s)	186
BslFI	GGGAC	2 cut(s)	354, 633
BslI	CCNNNNNNNGG	6 cut(s)	301, 338, 414, 553, 589, 615
BsmAI	GTCTC	3 cut(s)	105, 111, 663
BsmBI	CGTCTC	1 cut(s)	111
BsmFI	GGGAC	2 cut(s)	354, 633
BsnI	GGCC	4 cut(s)	201, 546, 582, 608
Bsp1286I	GDGCHC	1 cut(s)	512
Bsp143I	GATC	4 cut(s)	163, 417, 597, 643
BspANI	GGCC	4 cut(s)	201, 546, 582, 608
BspCNI	CTCAG	3 cut(s)	159, 195, 427
BspLI	GGNNCC	3 cut(s)	124, 599, 717
BspPI	GGATC	3 cut(s)	425, 592, 605
BsrBI	CCGCTC	2 cut(s)	207, 504
BsrDI	GCAATG	2 cut(s)	544, 696
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	4 cut(s)	86, 145, 620, 632
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	2 cut(s)	300, 748
BssMI	GATC	4 cut(s)	163, 417, 597, 643
BssT1I	CCWWGG	1 cut(s)	748
Bst2UI	CCWGG	1 cut(s)	524
Bst4CI	ACNGT	2 cut(s)	453, 657
Bst6I	CTCTTC	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	187, 199
BstDEI	CTNAG	3 cut(s)	167, 203, 435
BstDSI	CCRYGG	1 cut(s)	300
BstEII	GGTNACC	1 cut(s)	307
BstF5I	GGATG	1 cut(s)	270
BstH2I	RGCGCY	2 cut(s)	150, 733
BstHHI	GCGC	3 cut(s)	149, 197, 732
BstKTI	GATC	4 cut(s)	166, 420, 600, 646
BstMAI	GTCTC	3 cut(s)	105, 111, 663
BstMBI	GATC	4 cut(s)	163, 417, 597, 643
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 543
BstNI	CCWGG	1 cut(s)	524
BstPI	GGTNACC	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	522
BstSFI	CTRYAG	1 cut(s)	190
BstV1I	GCAGC	4 cut(s)	189, 221, 243, 303
BstV2I	GAAGAC	1 cut(s)	275
BstX2I	RGATCY	2 cut(s)	163, 597
BstYI	RGATCY	2 cut(s)	163, 597
BsuRI	GGCC	4 cut(s)	201, 546, 582, 608
BtgI	CCRYGG	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	270
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	2 cut(s)	187, 199
CaiI	CAGNNNCTG	1 cut(s)	615
CfoI	GCGC	3 cut(s)	149, 197, 732
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	2 cut(s)	544, 580
CspCI	CAANNNNNGTGG	2 cut(s)	257, 292
CviAII	CATG	1 cut(s)	401
DdeI	CTNAG	3 cut(s)	167, 203, 435
DpnI	GATC	4 cut(s)	165, 419, 599, 645
DpnII	GATC	4 cut(s)	163, 417, 597, 643
EaeI	YGGCCR	1 cut(s)	606
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
EciI	GGCGGA	1 cut(s)	490
Ecl136II	GAGCTC	1 cut(s)	510
Eco130I	CCWWGG	1 cut(s)	748
Eco147I	AGGCCT	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	512
Eco53kI	GAGCTC	1 cut(s)	510
Eco91I	GGTNACC	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	510
EcoO65I	GGTNACC	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	522
EcoT14I	CCWWGG	1 cut(s)	748
EcoT38I	GRGCYC	1 cut(s)	512
ErhI	CCWWGG	1 cut(s)	748
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	1 cut(s)	404
FaiI	YATR	6 cut(s)	159, 402, 449, 456, 708, 745
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FaqI	GGGAC	2 cut(s)	354, 633
FatI	CATG	1 cut(s)	400
FauI	CCCGC	3 cut(s)	200, 476, 497
Fnu4HI	GCNGC	7 cut(s)	52, 178, 232, 235, 292, 405, 688
FokI	GGATG	1 cut(s)	257
FriOI	GRGCYC	1 cut(s)	512
Fsp4HI	GCNGC	7 cut(s)	52, 178, 232, 235, 292, 405, 688
FspBI	CTAG	2 cut(s)	108, 248
GlaI	GCGC	3 cut(s)	148, 196, 731
GluI	GCNGC	7 cut(s)	52, 178, 232, 235, 292, 405, 688
GsuI	CTGGAG	1 cut(s)	162
HaeII	RGCGCY	2 cut(s)	150, 733
HaeIII	GGCC	4 cut(s)	201, 546, 582, 608
HapII	CCGG	1 cut(s)	186
HhaI	GCGC	3 cut(s)	149, 197, 732
Hin1II	CATG	1 cut(s)	404
Hin6I	GCGC	3 cut(s)	147, 195, 730
HinP1I	GCGC	3 cut(s)	147, 195, 730
HinfI	GANTC	3 cut(s)	5, 342, 492
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	4 cut(s)	168, 352, 653, 737
Hpy188III	TCNNGA	5 cut(s)	108, 248, 339, 641, 768
Hpy8I	GTNNAC	1 cut(s)	265
Hpy99I	CGWCG	2 cut(s)	137, 554
HpyAV	CCTTC	2 cut(s)	418, 571
HpyCH4III	ACNGT	2 cut(s)	453, 657
HpyCH4V	TGCA	1 cut(s)	369
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 543
HpyF3I	CTNAG	3 cut(s)	167, 203, 435
Hsp92II	CATG	1 cut(s)	404
HspAI	GCGC	3 cut(s)	147, 195, 730
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
Kzo9I	GATC	4 cut(s)	163, 417, 597, 643
LmnI	GCTCC	5 cut(s)	128, 239, 507, 515, 721
Lsp1109I	GCAGC	4 cut(s)	189, 221, 243, 303
MaeI	CTAG	2 cut(s)	108, 248
MaeIII	GTNAC	2 cut(s)	307, 673
MalI	GATC	4 cut(s)	165, 419, 599, 645
MbiI	CCGCTC	2 cut(s)	207, 504
MboI	GATC	4 cut(s)	163, 417, 597, 643
MboII	GAAGA	5 cut(s)	28, 31, 86, 97, 275
MflI	RGATCY	2 cut(s)	163, 597
MhlI	GDGCHC	1 cut(s)	512
MlsI	TGGCCA	1 cut(s)	608
MluCI	AATT	1 cut(s)	334
MluNI	TGGCCA	1 cut(s)	608
MlyI	GAGTC	1 cut(s)	336
Mox20I	TGGCCA	1 cut(s)	608
MroNI	GCCGGC	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	608
Msp20I	TGGCCA	1 cut(s)	608
MspA1I	CMGCKG	1 cut(s)	234
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	524
MwoI	GCNNNNNNNGC	2 cut(s)	186, 543
NaeI	GCCGGC	1 cut(s)	187
NdeII	GATC	4 cut(s)	163, 417, 597, 643
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	1 cut(s)	404
NlaIV	GGNNCC	3 cut(s)	124, 599, 717
NmuCI	GTSAC	1 cut(s)	307
PceI	AGGCCT	1 cut(s)	201
PdiI	GCCGGC	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	215
PfeI	GAWTC	2 cut(s)	5, 492
PflMI	CCANNNNNTGG	1 cut(s)	615
PkrI	GCNGC	7 cut(s)	53, 179, 233, 236, 293, 406, 689
PleI	GAGTC	1 cut(s)	336
PpsI	GAGTC	1 cut(s)	336
Psp124BI	GAGCTC	1 cut(s)	512
Psp6I	CCWGG	1 cut(s)	522
PspEI	GGTNACC	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	3 cut(s)	124, 599, 717
PspPI	GGNCC	2 cut(s)	544, 580
PstNI	CAGNNNCTG	1 cut(s)	615
PsuI	RGATCY	2 cut(s)	163, 597
PvuII	CAGCTG	1 cut(s)	234
SacI	GAGCTC	1 cut(s)	512
SatI	GCNGC	7 cut(s)	52, 178, 232, 235, 292, 405, 688
Sau3AI	GATC	4 cut(s)	163, 417, 597, 643
Sau96I	GGNCC	2 cut(s)	544, 580
SchI	GAGTC	1 cut(s)	336
ScrFI	CCNGG	1 cut(s)	524
SduI	GDGCHC	1 cut(s)	512
SfcI	CTRYAG	1 cut(s)	190
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
Sse9I	AATT	1 cut(s)	334
SseBI	AGGCCT	1 cut(s)	201
SspMI	CTAG	2 cut(s)	108, 248
SstI	GAGCTC	1 cut(s)	512
StuI	AGGCCT	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	522
StyI	CCWWGG	1 cut(s)	748
TaaI	ACNGT	2 cut(s)	453, 657
TaqI	TCGA	3 cut(s)	549, 642, 669
TasI	AATT	1 cut(s)	334
TauI	GCSGC	3 cut(s)	54, 407, 690
TfiI	GAWTC	2 cut(s)	5, 492
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	4 cut(s)	177, 231, 234, 291
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	1 cut(s)	31
TspGWI	ACGGA	5 cut(s)	121, 263, 289, 372, 711
TspRI	CASTG	1 cut(s)	73
Van91I	CCANNNNNTGG	1 cut(s)	615
XbaI	TCTAGA	2 cut(s)	107, 247
XmnI	GAANNNNTTC	1 cut(s)	215
XspI	CTAG	2 cut(s)	108, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.