Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0013383

Physical Location & Seq

Genomic Coordinates Forward (+)

22899574 .. 22901427

Gene Structure 1854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1143000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGAGGAACCCTTCAACTTCAAGCTGCTGCATTTCTCCTCCGCGTTTTATTGTGCAGCAACATTGCTGCTGCACGGGATGTAGAAGAATGGAAGACTGCCACTGCAACGTATTCCAAAGAAACTGATGGGTCTATCATTATTGAAGGTGCTTGTGGTTATGGGGACCTTCACAGGATCAGCTATGGGAAGCACAGTGCTGGTCTGAGTGGAATTTTGTTCAACAAAGGGAGCACCTGTGGGGCTTGTTATGAGCTGAGATGTGTTGATCACATCTTGTGGTGTCTGCAGGGGAGCCCCTCCGTTATTCTCACTGCTACAGATTTCTGCCCTCCGAATTTTGGCCTCTCAGCAGACTATGGTGGCTGGTGCAATTTCCCCAAAGAACACTTTGAGATGTCTGAGGCAGCATTTGGTGAAATTGCAAAGAAAAAAGCCGATATTGTGCCAGTTCAATGTTTAGATGGGGAGGTTCTTGCTGTGAAAGTGAAGGGTTCAAGAACCGGGTGGATACCGCTGGCCAGGAACTGGGGACAGAACTGGCAAAGCAATGTCAATCTTAAAGGGCAGCCTCTTTCGTTCGAGGTAACCGTAAGTAGCGGAAGAACAGTCACATCTTACAATGTTGCTCCAGCAAACTGGCAGTTTGGCCAGACATTTGAAGGGAAACAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009628 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0050896 GO:0071944 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

226

Amino Acids

24.4

Weight (kDa)

6.42

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	67 - 152	3.3e-17	Lytic transglycolase
Expansin_C	PF01357	155 - 211	4.4e-19	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38210
fragaria_vesca	FvH4_2g17030 FvH4_2g17030
malus_domestica	MD05G1143200.v1.1 MD10G1143000.v1.1
prunus_persica	Prupe.8G182000_v2.0.a1
pyrus_communis	pycom05g13770 pycom10g12290
rosa_chinensis	RchiOBHm_Chr6g0281211
rosa_laevigata	RLG00000012985
rosa_multiflora	Rmu_sc0027531.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187220
rosa_rugosa	Rorug06G0139700
rosa_samantha	Rh6AG251600 Rh6BG254900 Rh6CG254400 Rh6DG246200
rosa_wichuraiana	Rw6G021850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	528
AccII	CGCG	1 cut(s)	45
AciI	CCGC	3 cut(s)	43, 515, 600
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	2 cut(s)	519, 649
AcsI	RAATTY	2 cut(s)	213, 337
AfiI	CCNNNNNNNGG	2 cut(s)	341, 528
AgsI	TTSAA	7 cut(s)	17, 23, 146, 223, 455, 498, 662
AjnI	CCWGG	1 cut(s)	521
AluBI	AGCT	3 cut(s)	26, 183, 256
AluI	AGCT	3 cut(s)	26, 183, 256
Alw21I	GWGCWC	1 cut(s)	236
AlwI	GGATC	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	528
AoxI	GGCC	3 cut(s)	343, 519, 649
ApeKI	GCWGC	7 cut(s)	26, 29, 57, 68, 71, 407, 568
ApoI	RAATTY	2 cut(s)	213, 337
Asp700I	GAANNNNTTC	1 cut(s)	671
AspS9I	GGNCC	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	505
AsuHPI	GGTGA	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	166
BalI	TGGCCA	2 cut(s)	521, 651
BanII	GRGCYC	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	7 cut(s)	13, 16, 55, 58, 69, 419, 580
BccI	CCATC	2 cut(s)	122, 458
BciT130I	CCWGG	1 cut(s)	523
BciVI	GTATCC	1 cut(s)	504
BclI	TGATCA	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	505
BfmI	CTRYAG	2 cut(s)	287, 318
BfuI	GTATCC	1 cut(s)	504
BisI	GCNGC	7 cut(s)	27, 30, 58, 69, 72, 408, 569
BlsI	GCNGC	7 cut(s)	28, 31, 59, 70, 73, 409, 570
Bme1390I	CCNGG	2 cut(s)	505, 523
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	3 cut(s)	10, 167, 296
BmrFI	CCNGG	2 cut(s)	505, 523
BmrI	ACTGGG	1 cut(s)	538
BmuI	ACTGGG	1 cut(s)	538
BpiI	GAAGAC	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	615
BpuMI	CCSGG	1 cut(s)	505
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 528
Bse1I	ACTGG	4 cut(s)	449, 533, 545, 644
Bse3DI	GCAATG	2 cut(s)	63, 556
BseBI	CCWGG	1 cut(s)	523
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	2 cut(s)	341, 528
BseMI	GCAATG	2 cut(s)	63, 556
BseMII	CTCAG	4 cut(s)	197, 248, 363, 393
BseNI	ACTGG	4 cut(s)	449, 533, 545, 644
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	7 cut(s)	13, 16, 55, 58, 69, 419, 580
BsgI	GTGCAG	2 cut(s)	57, 76
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	3 cut(s)	345, 521, 651
BsiHKAI	GWGCWC	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	504
BslFI	GGGAC	2 cut(s)	179, 546
BslI	CCNNNNNNNGG	2 cut(s)	341, 528
BsmFI	GGGAC	2 cut(s)	179, 546
BsnI	GGCC	3 cut(s)	345, 521, 651
Bsp1286I	GDGCHC	2 cut(s)	236, 299
Bsp143I	GATC	2 cut(s)	177, 268
BspACI	CCGC	3 cut(s)	43, 515, 600
BspANI	GGCC	3 cut(s)	345, 521, 651
BspCNI	CTCAG	4 cut(s)	198, 249, 362, 394
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	3 cut(s)	10, 167, 296
BspMAI	CTGCAG	1 cut(s)	291
BspPI	GGATC	1 cut(s)	185
BsrDI	GCAATG	2 cut(s)	63, 556
BsrI	ACTGG	4 cut(s)	449, 533, 545, 644
BssMI	GATC	2 cut(s)	177, 268
Bst2UI	CCWGG	1 cut(s)	523
Bst4CI	ACNGT	4 cut(s)	197, 592, 610, 672
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	4 cut(s)	206, 257, 349, 402
BstEII	GGTNACC	1 cut(s)	586
BstF5I	GGATG	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	45
BstKTI	GATC	2 cut(s)	180, 271
BstMBI	GATC	2 cut(s)	177, 268
BstNI	CCWGG	1 cut(s)	523
BstPI	GGTNACC	1 cut(s)	586
BstSCI	CCNGG	2 cut(s)	503, 521
BstSFI	CTRYAG	2 cut(s)	287, 318
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	7 cut(s)	13, 16, 55, 58, 69, 419, 580
BstV2I	GAAGAC	1 cut(s)	101
BstXI	CCANNNNNNTGG	1 cut(s)	639
BsuI	GTATCC	1 cut(s)	504
BsuRI	GGCC	3 cut(s)	345, 521, 651
BtsCI	GGATG	1 cut(s)	85
BtsI	GCAGTG	2 cut(s)	102, 312
BtsIMutI	CAGTG	3 cut(s)	102, 202, 312
Cac8I	GCNNGC	1 cut(s)	519
CaiI	CAGNNNCTG	1 cut(s)	528
Cfr13I	GGNCC	1 cut(s)	166
DdeI	CTNAG	4 cut(s)	206, 257, 349, 402
DpnI	GATC	2 cut(s)	179, 270
DpnII	GATC	2 cut(s)	177, 268
EaeI	YGGCCR	2 cut(s)	519, 649
Eco24I	GRGCYC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	166
Eco91I	GGTNACC	1 cut(s)	586
EcoO109I	RGGNCCY	1 cut(s)	166
EcoO65I	GGTNACC	1 cut(s)	586
EcoRII	CCWGG	1 cut(s)	521
EcoT38I	GRGCYC	1 cut(s)	299
FaiI	YATR	4 cut(s)	162, 186, 252, 360
FaqI	GGGAC	2 cut(s)	179, 546
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	7 cut(s)	27, 30, 58, 69, 72, 408, 569
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	7 cut(s)	27, 30, 58, 69, 72, 408, 569
GluI	GCNGC	7 cut(s)	27, 30, 58, 69, 72, 408, 569
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	3 cut(s)	345, 521, 651
HapII	CCGG	1 cut(s)	504
HpaII	CCGG	1 cut(s)	504
HphI	GGTGA	1 cut(s)	428
Hpy188I	TCNGA	4 cut(s)	207, 336, 403, 677
Hpy188III	TCNNGA	1 cut(s)	498
HpyAV	CCTTC	5 cut(s)	23, 140, 179, 484, 656
HpyCH4III	ACNGT	4 cut(s)	197, 592, 610, 672
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	7 cut(s)	32, 57, 74, 107, 289, 372, 425
HpyF3I	CTNAG	4 cut(s)	206, 257, 349, 402
HpySE526I	ACGT	1 cut(s)	110
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	177, 268
LmnI	GCTCC	3 cut(s)	231, 294, 634
Lsp1109I	GCAGC	7 cut(s)	13, 16, 55, 58, 69, 419, 580
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	2 cut(s)	586, 610
MalI	GATC	2 cut(s)	179, 270
MboI	GATC	2 cut(s)	177, 268
MboII	GAAGA	3 cut(s)	98, 106, 615
MhlI	GDGCHC	2 cut(s)	236, 299
MlsI	TGGCCA	2 cut(s)	521, 651
MluCI	AATT	4 cut(s)	213, 337, 373, 420
MluNI	TGGCCA	2 cut(s)	521, 651
MnlI	CCTC	8 cut(s)	50, 310, 342, 356, 397, 463, 577, 582
Mox20I	TGGCCA	2 cut(s)	521, 651
MroXI	GAANNNNTTC	1 cut(s)	671
MscI	TGGCCA	2 cut(s)	521, 651
MseI	TTAA	1 cut(s)	561
Msp20I	TGGCCA	2 cut(s)	521, 651
MspA1I	CMGCKG	1 cut(s)	517
MspI	CCGG	1 cut(s)	504
MspR9I	CCNGG	2 cut(s)	505, 523
MvaI	CCWGG	1 cut(s)	523
MvnI	CGCG	1 cut(s)	45
NciI	CCSGG	1 cut(s)	505
NdeII	GATC	2 cut(s)	177, 268
NlaIV	GGNNCC	3 cut(s)	10, 167, 296
NmuCI	GTSAC	1 cut(s)	610
PcsI	WCGNNNNNNNCGW	1 cut(s)	588
PdmI	GAANNNNTTC	1 cut(s)	671
PflMI	CCANNNNNTGG	1 cut(s)	528
PkrI	GCNGC	7 cut(s)	28, 31, 59, 70, 73, 409, 570
PpuMI	RGGWCCY	1 cut(s)	166
Psp5II	RGGWCCY	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	521
PspEI	GGTNACC	1 cut(s)	586
PspGI	CCWGG	1 cut(s)	521
PspN4I	GGNNCC	3 cut(s)	10, 167, 296
PspPI	GGNCC	1 cut(s)	166
PspPPI	RGGWCCY	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	291
PstNI	CAGNNNCTG	1 cut(s)	528
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	7 cut(s)	27, 30, 58, 69, 72, 408, 569
Sau3AI	GATC	2 cut(s)	177, 268
Sau96I	GGNCC	1 cut(s)	166
ScrFI	CCNGG	2 cut(s)	505, 523
SduI	GDGCHC	2 cut(s)	236, 299
SetI	ASST	9 cut(s)	28, 113, 151, 171, 185, 239, 258, 474, 588
SfcI	CTRYAG	2 cut(s)	287, 318
SinI	GGWCC	1 cut(s)	166
Sse9I	AATT	4 cut(s)	213, 337, 373, 420
SsiI	CCGC	3 cut(s)	43, 515, 600
StyD4I	CCNGG	2 cut(s)	503, 521
TaaI	ACNGT	4 cut(s)	197, 592, 610, 672
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	582
TasI	AATT	4 cut(s)	213, 337, 373, 420
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	3 cut(s)	109, 202, 319
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	7 cut(s)	26, 29, 57, 68, 71, 407, 568
Tsp45I	GTSAC	1 cut(s)	610
TspGWI	ACGGA	1 cut(s)	292
TspRI	CASTG	3 cut(s)	109, 202, 319
Van91I	CCANNNNNTGG	1 cut(s)	528
VpaK11BI	GGWCC	1 cut(s)	166
XapI	RAATTY	2 cut(s)	213, 337
XmnI	GAANNNNTTC	1 cut(s)	671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.