Prupe.8G182000_v2.0.a1

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0013383
Physical Location & Seq
Forward (+)
18177542 .. 18180101
2560 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G182000.1

Sequence Viewer

Length: 780 bp
ATGGGAGGAACCCTTCAAGCTACACTTCTCTACTTGGTTCTCTACTTGGTTCTTTTGCATGTATGCAGGTGCAGCAACATTGTTGTTTCGCAAGATGAAGAATGGAAGACTGCTACTGCAACATATTCCAAAGAAACAGATGGGTCTATTATTACTGAAGGTGCTTGTGGTTATGGGGACCTTCACAAGATTAGCTATGGCAAACACAGTGCTGGGTTGAGTGGCATTTTATTCAACAAAGGGAGTATATGTGGGGCTTGTTATGAGTTGAGATGTGTTGACCACATCTTGTGGTGCCTGTTAGGGAGCCCCTCTGTTACTCTCACTGCTACAGATTTCTGCCCTCCAAATTATGGGCTTTCAAAAGATTATGGTGGTTGGTGCAATTTCCCTAAAGAACACTTTGAGATGTCAGAGGCAGCATTCGCTGAAATTGCAAAGAGAAAAGCTGATATTGTGCCAGTTCAGTATAGGAGGGTGAAGTGTGAGAGAAGTGGGGGGCTGAGATTCATGATGAGTGGAAGTTCTCACTTCTACCAAGTCTTGATTACAAATGTAGGTTCAGATGGGGAAATACTTGCTGTCAAGGTGAAGGGTTCGAGAACCGGTTGGATACCAATGGCCAGGAACTGGGGACAGAACTGGCAAAGCAATGTCAATCTTAAGGGGCAGCCTCTTTCCTTTGAGGTAACCATCAGTAGTGGAAGAACACTCACATCTTATAATGTTGCTCCAGCAAACTGGCAGTTTGGTCAGACATTTGAGGGGAAACAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009628 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0050896 GO:0071944 GO:0080167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

260

Amino Acids

28.57

Weight (kDa)

8.28

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38210
fragaria_vesca FvH4_2g17030 FvH4_2g17030
malus_domestica MD05G1143200.v1.1 MD10G1143000.v1.1
prunus_persica Prupe.8G182000_v2.0.a1
pyrus_communis pycom05g13770 pycom10g12290
rosa_chinensis RchiOBHm_Chr6g0281211
rosa_laevigata RLG00000012985
rosa_multiflora Rmu_sc0027531.1_g000003
rosa_roxburghii Rroxscaffold_7G00187220
rosa_rugosa Rorug06G0139700
rosa_samantha Rh6AG251600 Rh6BG254900 Rh6CG254400 Rh6DG246200
rosa_wichuraiana Rw6G021850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 723
AarI CACCTGC 1 cut(s) 57
Acc36I ACCTGC 1 cut(s) 57
AccB1I GGYRCC 1 cut(s) 294
AccB7I CCANNNNNTGG 2 cut(s) 353, 630
AcoI YGGCCR 1 cut(s) 621
AcuI CTGAAG 1 cut(s) 177
AfiI CCNNNNNNNGG 2 cut(s) 353, 630
AflII CTTAAG 1 cut(s) 662
AgeI ACCGGT 1 cut(s) 605
AgsI TTSAA 3 cut(s) 17, 235, 363
AjnI CCWGG 1 cut(s) 623
AluBI AGCT 3 cut(s) 20, 195, 449
AluI AGCT 3 cut(s) 20, 195, 449
AlwNI CAGNNNCTG 1 cut(s) 630
AoxI GGCC 1 cut(s) 621
ApeKI GCWGC 3 cut(s) 72, 419, 670
AsiGI ACCGGT 1 cut(s) 605
Asp700I GAANNNNTTC 1 cut(s) 773
AspS9I GGNCC 1 cut(s) 178
AsuHPI GGTGA 2 cut(s) 490, 601
AvaII GGWCC 1 cut(s) 178
BalI TGGCCA 1 cut(s) 623
BanI GGYRCC 1 cut(s) 294
BanII GRGCYC 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 113
BbvI GCAGC 3 cut(s) 84, 431, 682
BccI CCATC 3 cut(s) 134, 560, 701
BciT130I CCWGG 1 cut(s) 625
BciVI GTATCC 1 cut(s) 606
BfaI CTAG 1 cut(s) 778
BfmI CTRYAG 1 cut(s) 330
BfrI CTTAAG 1 cut(s) 662
BfuAI ACCTGC 1 cut(s) 57
BfuI GTATCC 1 cut(s) 606
BisI GCNGC 3 cut(s) 73, 420, 671
BlsI GCNGC 3 cut(s) 74, 421, 672
Bme1390I CCNGG 1 cut(s) 625
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 4 cut(s) 10, 179, 296, 308
BmrFI CCNGG 1 cut(s) 625
BmrI ACTGGG 1 cut(s) 640
BmuI ACTGGG 1 cut(s) 640
BpiI GAAGAC 1 cut(s) 113
BpmI CTGGAG 1 cut(s) 717
BsaWI WCCGGW 1 cut(s) 605
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bsc4I CCNNNNNNNGG 2 cut(s) 353, 630
Bse118I RCCGGY 1 cut(s) 605
Bse1I ACTGG 4 cut(s) 461, 635, 647, 746
Bse3DI GCAATG 1 cut(s) 658
BseBI CCWGG 1 cut(s) 625
BseLI CCNNNNNNNGG 2 cut(s) 353, 630
BseMI GCAATG 1 cut(s) 658
BseMII CTCAG 1 cut(s) 494
BseNI ACTGG 4 cut(s) 461, 635, 647, 746
BseXI GCAGC 3 cut(s) 84, 431, 682
BseYI CCCAGC 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 91
BshFI GGCC 1 cut(s) 623
BshNI GGYRCC 1 cut(s) 294
BshTI ACCGGT 1 cut(s) 605
BsiSI CCGG 1 cut(s) 606
BslFI GGGAC 2 cut(s) 191, 648
BslI CCNNNNNNNGG 2 cut(s) 353, 630
BsmFI GGGAC 2 cut(s) 191, 648
BsmI GAATGC 1 cut(s) 422
BsnI GGCC 1 cut(s) 623
Bsp1286I GDGCHC 1 cut(s) 311
BspANI GGCC 1 cut(s) 623
BspCNI CTCAG 1 cut(s) 495
BspHI TCATGA 1 cut(s) 510
BspLI GGNNCC 4 cut(s) 10, 179, 296, 308
BspMI ACCTGC 1 cut(s) 57
BspT107I GGYRCC 1 cut(s) 294
BspTI CTTAAG 1 cut(s) 662
BsrDI GCAATG 1 cut(s) 658
BsrFI RCCGGY 1 cut(s) 605
BsrI ACTGG 4 cut(s) 461, 635, 647, 746
BssAI RCCGGY 1 cut(s) 605
Bst2UI CCWGG 1 cut(s) 625
Bst4CI ACNGT 2 cut(s) 209, 774
BstAFI CTTAAG 1 cut(s) 662
BstDEI CTNAG 1 cut(s) 503
BstEII GGTNACC 1 cut(s) 688
BstMWI GCNNNNNNNGC 3 cut(s) 72, 425, 434
BstNI CCWGG 1 cut(s) 625
BstNSI RCATGY 1 cut(s) 62
BstPI GGTNACC 1 cut(s) 688
BstSCI CCNGG 1 cut(s) 623
BstSFI CTRYAG 1 cut(s) 330
BstV1I GCAGC 3 cut(s) 84, 431, 682
BstV2I GAAGAC 1 cut(s) 113
BstXI CCANNNNNNTGG 1 cut(s) 741
BsuI GTATCC 1 cut(s) 606
BsuRI GGCC 1 cut(s) 623
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 2 cut(s) 214, 324
BveI ACCTGC 1 cut(s) 57
CaiI CAGNNNCTG 1 cut(s) 630
CciI TCATGA 1 cut(s) 510
Cfr10I RCCGGY 1 cut(s) 605
Cfr13I GGNCC 1 cut(s) 178
CspAI ACCGGT 1 cut(s) 605
CviAII CATG 2 cut(s) 59, 511
CviJI RGCY 9 cut(s) 20, 195, 257, 309, 358, 449, 502, 623, 673
CviKI_1 RGCY 9 cut(s) 20, 195, 257, 309, 358, 449, 502, 623, 673
DdeI CTNAG 1 cut(s) 503
EaeI YGGCCR 1 cut(s) 621
Eco24I GRGCYC 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 177
Eco91I GGTNACC 1 cut(s) 688
EcoO109I RGGNCCY 1 cut(s) 178
EcoO65I GGTNACC 1 cut(s) 688
EcoRII CCWGG 1 cut(s) 623
EcoT38I GRGCYC 1 cut(s) 311
FaeI CATG 2 cut(s) 62, 514
FalI AAGNNNNNCTT 2 cut(s) 9, 41
FaqI GGGAC 2 cut(s) 191, 648
FatI CATG 2 cut(s) 58, 510
Fnu4HI GCNGC 3 cut(s) 73, 420, 671
FriOI GRGCYC 1 cut(s) 311
Fsp4HI GCNGC 3 cut(s) 73, 420, 671
FspBI CTAG 1 cut(s) 778
GluI GCNGC 3 cut(s) 73, 420, 671
GsaI CCCAGC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 717
HaeIII GGCC 1 cut(s) 623
HapII CCGG 1 cut(s) 606
Hin1II CATG 2 cut(s) 62, 514
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 1 cut(s) 507
HpaII CCGG 1 cut(s) 606
HphI GGTGA 2 cut(s) 490, 601
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 3 cut(s) 415, 565, 756
Hpy188III TCNNGA 3 cut(s) 511, 544, 600
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 4 cut(s) 23, 152, 191, 586
HpyCH4III ACNGT 2 cut(s) 209, 774
HpyCH4V TGCA 6 cut(s) 58, 66, 72, 119, 384, 437
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 425, 434
HpyF3I CTNAG 1 cut(s) 503
Hsp92II CATG 2 cut(s) 62, 514
LmnI GCTCC 2 cut(s) 306, 736
Lsp1109I GCAGC 3 cut(s) 84, 431, 682
MaeI CTAG 1 cut(s) 778
MaeIII GTNAC 2 cut(s) 316, 688
MboII GAAGA 3 cut(s) 110, 118, 717
MhlI GDGCHC 1 cut(s) 311
MlsI TGGCCA 1 cut(s) 623
MluCI AATT 3 cut(s) 349, 385, 432
MluNI TGGCCA 1 cut(s) 623
MmeI TCCRAC 1 cut(s) 590
MnlI CCTC 7 cut(s) 322, 354, 409, 468, 679, 684, 757
Mox20I TGGCCA 1 cut(s) 623
MroXI GAANNNNTTC 1 cut(s) 773
MscI TGGCCA 1 cut(s) 623
MseI TTAA 1 cut(s) 663
Msp20I TGGCCA 1 cut(s) 623
MspCI CTTAAG 1 cut(s) 662
MspI CCGG 1 cut(s) 606
MspR9I CCNGG 1 cut(s) 625
Mva1269I GAATGC 1 cut(s) 422
MvaI CCWGG 1 cut(s) 625
MwoI GCNNNNNNNGC 3 cut(s) 72, 425, 434
NlaIII CATG 2 cut(s) 62, 514
NlaIV GGNNCC 4 cut(s) 10, 179, 296, 308
NspI RCATGY 1 cut(s) 62
PagI TCATGA 1 cut(s) 510
PaqCI CACCTGC 1 cut(s) 57
PctI GAATGC 1 cut(s) 422
PdmI GAANNNNTTC 1 cut(s) 773
PfeI GAWTC 1 cut(s) 507
PflMI CCANNNNNTGG 2 cut(s) 353, 630
PinAI ACCGGT 1 cut(s) 605
PkrI GCNGC 3 cut(s) 74, 421, 672
PpuMI RGGWCCY 1 cut(s) 178
PsiI TTATAA 1 cut(s) 723
Psp5II RGGWCCY 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 623
PspEI GGTNACC 1 cut(s) 688
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 1 cut(s) 623
PspN4I GGNNCC 4 cut(s) 10, 179, 296, 308
PspPI GGNCC 1 cut(s) 178
PspPPI RGGWCCY 1 cut(s) 178
PstNI CAGNNNCTG 1 cut(s) 630
SaqAI TTAA 1 cut(s) 663
SatI GCNGC 3 cut(s) 73, 420, 671
Sau96I GGNCC 1 cut(s) 178
ScrFI CCNGG 1 cut(s) 625
SduI GDGCHC 1 cut(s) 311
SetI ASST 9 cut(s) 22, 71, 163, 183, 197, 451, 562, 591, 690
SfcI CTRYAG 1 cut(s) 330
SinI GGWCC 1 cut(s) 178
SmlI CTYRAG 1 cut(s) 662
SmoI CTYRAG 1 cut(s) 662
Sse9I AATT 3 cut(s) 349, 385, 432
SspMI CTAG 1 cut(s) 778
StyD4I CCNGG 1 cut(s) 623
TaaI ACNGT 2 cut(s) 209, 774
TaqI TCGA 1 cut(s) 599
TasI AATT 3 cut(s) 349, 385, 432
TfiI GAWTC 1 cut(s) 507
Tru1I TTAA 1 cut(s) 663
Tru9I TTAA 1 cut(s) 663
TscAI CASTG 2 cut(s) 214, 331
TseI GCWGC 3 cut(s) 72, 419, 670
TspDTI ATGAA 2 cut(s) 111, 499
TspRI CASTG 2 cut(s) 214, 331
Van91I CCANNNNNTGG 2 cut(s) 353, 630
Vha464I CTTAAG 1 cut(s) 662
VpaK11BI GGWCC 1 cut(s) 178
XceI RCATGY 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 773
XspI CTAG 1 cut(s) 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.