pycom05g13770

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0013383
Physical Location & Seq
Forward (+)
17317268 .. 17318951
1684 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g13770.3

Sequence Viewer

Length: 768 bp
ATGGGAGGAGCCCTTCAACTTCAAGCAGCTGCATTTCTCTTCTGGGTTTTACTGTGCGGCAGCATTGCTGCTGCCCAGGATGAAGAAGAATGGAAGACGGCCACTGCAACATATTCCAACGAAACTGATGGGTCCATCATTACTGAAGGTGCGTGTGGTTATGGTGACCTTCACAGGATCAGCTATGGGAAGCACAGTGCTGGGCTGAGTGGCATTTTGTTCAACAAAGGGAGTACCTGTGGCGCTTGTTACGAACTGAGATGTGTTGACCACATCTTGTGGTGTCTGCAAGGGAGCCCCTCTGTTATTCTCACTGCTACAGATTTCTGCCCTCCGAATTTCGGGCTCTCAAAAGATTATGGTGGCTGGTGCAATTTCCCCAATGAACACTTTGAGATGTCTGAGGCAGCATTTGGTGAAATTGCAAAGAAAAAAGCCGATATTGTGCCAGTTCAATATAGGAGGGTGAAGTGTGAGAGAATTGGAGGGATAAGGTTCCTGGTGGGTGGGAGTTCTCACTTCTACCAAGTCCTAATCACCAATGTAGGTTCAGATGGGGAGGTTCTTGCTGTGAAAGTGAAGGGTTCAAGGACTGGGTGGATACCGATGGCCAGGAACTGGGGACAGAACTGGCAGAGCAATGTCAATCTTAAAGGGCAGCCTCTTTCGTTCGAGGTAACTGTAAGTAGTGGAAGAACACTAACATCTTACAATGTTGCTCCAGCAAACTGGCAGTTTGGCCAGACATTTGAAGGGAAACAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009628 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0050896 GO:0071944 GO:0080167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

256

Amino Acids

27.81

Weight (kDa)

6.51

Isoelectric Point (pI)

35.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38210
fragaria_vesca FvH4_2g17030 FvH4_2g17030
malus_domestica MD05G1143200.v1.1 MD10G1143000.v1.1
prunus_persica Prupe.8G182000_v2.0.a1
pyrus_communis pycom05g13770 pycom10g12290
rosa_chinensis RchiOBHm_Chr6g0281211
rosa_laevigata RLG00000012985
rosa_multiflora Rmu_sc0027531.1_g000003
rosa_roxburghii Rroxscaffold_7G00187220
rosa_rugosa Rorug06G0139700
rosa_samantha Rh6AG251600 Rh6BG254900 Rh6CG254400 Rh6DG246200
rosa_wichuraiana Rw6G021850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 618
AciI CCGC 1 cut(s) 57
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 3 cut(s) 99, 609, 739
AcsI RAATTY 1 cut(s) 337
AcuI CTGAAG 1 cut(s) 165
AfaI GTAC 1 cut(s) 235
AfiI CCNNNNNNNGG 2 cut(s) 341, 618
AgsI TTSAA 6 cut(s) 17, 23, 223, 455, 588, 752
AjnI CCWGG 3 cut(s) 75, 498, 611
AluBI AGCT 2 cut(s) 29, 183
AluI AGCT 2 cut(s) 29, 183
AlwI GGATC 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 618
AoxI GGCC 3 cut(s) 99, 609, 739
ApeKI GCWGC 7 cut(s) 26, 29, 60, 68, 71, 407, 658
ApoI RAATTY 1 cut(s) 337
Asp700I GAANNNNTTC 1 cut(s) 761
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 132
AsuHPI GGTGA 4 cut(s) 176, 428, 478, 529
AvaII GGWCC 1 cut(s) 132
BalI TGGCCA 2 cut(s) 611, 741
BanII GRGCYC 3 cut(s) 13, 299, 348
BbsI GAAGAC 1 cut(s) 101
BbvI GCAGC 7 cut(s) 16, 38, 55, 58, 72, 419, 670
BccI CCATC 4 cut(s) 122, 143, 548, 601
BceAI ACGGC 1 cut(s) 114
BciT130I CCWGG 3 cut(s) 77, 500, 613
BciVI GTATCC 1 cut(s) 594
BfmI CTRYAG 1 cut(s) 318
BfoI RGCGCY 1 cut(s) 246
BfuI GTATCC 1 cut(s) 594
BisI GCNGC 8 cut(s) 27, 30, 58, 61, 69, 72, 408, 659
BlsI GCNGC 8 cut(s) 28, 31, 59, 62, 70, 73, 409, 660
Bme1390I CCNGG 3 cut(s) 77, 500, 613
Bme18I GGWCC 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 132
BmiI GGNNCC 4 cut(s) 10, 133, 296, 497
BmrFI CCNGG 3 cut(s) 77, 500, 613
BmrI ACTGGG 2 cut(s) 603, 628
BmuI ACTGGG 2 cut(s) 603, 628
BpiI GAAGAC 1 cut(s) 101
BpmI CTGGAG 1 cut(s) 705
BsaJI CCNNGG 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 618
Bse1I ACTGG 5 cut(s) 449, 598, 623, 635, 734
Bse3DI GCAATG 2 cut(s) 63, 646
BseBI CCWGG 3 cut(s) 77, 500, 613
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 2 cut(s) 341, 618
BseMI GCAATG 2 cut(s) 63, 646
BseMII CTCAG 3 cut(s) 197, 248, 393
BseNI ACTGG 5 cut(s) 449, 598, 623, 635, 734
BseRI GAGGAG 1 cut(s) 21
BseXI GCAGC 7 cut(s) 16, 38, 55, 58, 72, 419, 670
BseYI CCCAGC 1 cut(s) 200
BshFI GGCC 3 cut(s) 101, 611, 741
BslFI GGGAC 1 cut(s) 636
BslI CCNNNNNNNGG 2 cut(s) 341, 618
BsmFI GGGAC 1 cut(s) 636
BsnI GGCC 3 cut(s) 101, 611, 741
Bsp1286I GDGCHC 3 cut(s) 13, 299, 348
Bsp143I GATC 1 cut(s) 177
BspACI CCGC 1 cut(s) 57
BspANI GGCC 3 cut(s) 101, 611, 741
BspCNI CTCAG 3 cut(s) 198, 249, 394
BspLI GGNNCC 4 cut(s) 10, 133, 296, 497
BspPI GGATC 1 cut(s) 185
BsrDI GCAATG 2 cut(s) 63, 646
BsrI ACTGG 5 cut(s) 449, 598, 623, 635, 734
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 1 cut(s) 177
Bst2UI CCWGG 3 cut(s) 77, 500, 613
Bst4CI ACNGT 4 cut(s) 54, 197, 682, 762
Bst6I CTCTTC 1 cut(s) 44
BstDEI CTNAG 3 cut(s) 206, 257, 402
BstEII GGTNACC 1 cut(s) 164
BstF5I GGATG 1 cut(s) 85
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 1 cut(s) 180
BstMBI GATC 1 cut(s) 177
BstNI CCWGG 3 cut(s) 77, 500, 613
BstPI GGTNACC 1 cut(s) 164
BstSCI CCNGG 3 cut(s) 75, 498, 611
BstSFI CTRYAG 1 cut(s) 318
BstV1I GCAGC 7 cut(s) 16, 38, 55, 58, 72, 419, 670
BstV2I GAAGAC 1 cut(s) 101
BstXI CCANNNNNNTGG 1 cut(s) 729
BsuI GTATCC 1 cut(s) 594
BsuRI GGCC 3 cut(s) 101, 611, 741
BtsCI GGATG 1 cut(s) 85
BtsI GCAGTG 2 cut(s) 102, 312
BtsIMutI CAGTG 3 cut(s) 102, 202, 312
CaiI CAGNNNCTG 1 cut(s) 618
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 132
Csp6I GTAC 1 cut(s) 234
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 3 cut(s) 206, 257, 402
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
EaeI YGGCCR 3 cut(s) 99, 609, 739
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco24I GRGCYC 3 cut(s) 13, 299, 348
Eco47I GGWCC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 165
Eco91I GGTNACC 1 cut(s) 164
EcoO65I GGTNACC 1 cut(s) 164
EcoRII CCWGG 3 cut(s) 75, 498, 611
EcoT38I GRGCYC 3 cut(s) 13, 299, 348
FaiI YATR 5 cut(s) 112, 162, 186, 360, 459
FaqI GGGAC 1 cut(s) 636
Fnu4HI GCNGC 8 cut(s) 27, 30, 58, 61, 69, 72, 408, 659
FokI GGATG 1 cut(s) 92
FriOI GRGCYC 3 cut(s) 13, 299, 348
Fsp4HI GCNGC 8 cut(s) 27, 30, 58, 61, 69, 72, 408, 659
GlaI GCGC 1 cut(s) 244
GluI GCNGC 8 cut(s) 27, 30, 58, 61, 69, 72, 408, 659
GsaI CCCAGC 1 cut(s) 204
GsuI CTGGAG 1 cut(s) 705
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 3 cut(s) 101, 611, 741
HhaI GCGC 1 cut(s) 245
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HphI GGTGA 4 cut(s) 176, 428, 478, 529
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 4 cut(s) 336, 403, 553, 767
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 5 cut(s) 23, 140, 179, 574, 746
HpyCH4III ACNGT 4 cut(s) 54, 197, 682, 762
HpyCH4V TGCA 5 cut(s) 32, 107, 289, 372, 425
HpyF3I CTNAG 3 cut(s) 206, 257, 402
HspAI GCGC 1 cut(s) 243
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 3 cut(s) 8, 294, 724
Lsp1109I GCAGC 7 cut(s) 16, 38, 55, 58, 72, 419, 670
MaeIII GTNAC 3 cut(s) 164, 248, 676
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 5 cut(s) 31, 95, 98, 106, 705
MhlI GDGCHC 3 cut(s) 13, 299, 348
MlsI TGGCCA 2 cut(s) 611, 741
MluCI AATT 4 cut(s) 337, 373, 420, 480
MluNI TGGCCA 2 cut(s) 611, 741
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 8 cut(s) 310, 342, 397, 456, 479, 553, 667, 672
Mox20I TGGCCA 2 cut(s) 611, 741
MroXI GAANNNNTTC 1 cut(s) 761
MscI TGGCCA 2 cut(s) 611, 741
MseI TTAA 1 cut(s) 651
Msp20I TGGCCA 2 cut(s) 611, 741
MspA1I CMGCKG 1 cut(s) 29
MspR9I CCNGG 3 cut(s) 77, 500, 613
MvaI CCWGG 3 cut(s) 77, 500, 613
NdeII GATC 1 cut(s) 177
NlaIV GGNNCC 4 cut(s) 10, 133, 296, 497
NmuCI GTSAC 1 cut(s) 164
PdmI GAANNNNTTC 1 cut(s) 761
PflMI CCANNNNNTGG 1 cut(s) 618
PkrI GCNGC 8 cut(s) 28, 31, 59, 62, 70, 73, 409, 660
Psp6I CCWGG 3 cut(s) 75, 498, 611
PspEI GGTNACC 1 cut(s) 164
PspFI CCCAGC 1 cut(s) 200
PspGI CCWGG 3 cut(s) 75, 498, 611
PspN4I GGNNCC 4 cut(s) 10, 133, 296, 497
PspPI GGNCC 1 cut(s) 132
PstNI CAGNNNCTG 1 cut(s) 618
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SaqAI TTAA 1 cut(s) 651
SatI GCNGC 8 cut(s) 27, 30, 58, 61, 69, 72, 408, 659
Sau3AI GATC 1 cut(s) 177
Sau96I GGNCC 1 cut(s) 132
ScrFI CCNGG 3 cut(s) 77, 500, 613
SduI GDGCHC 3 cut(s) 13, 299, 348
SetI ASST 9 cut(s) 31, 151, 171, 185, 239, 497, 550, 564, 678
SfcI CTRYAG 1 cut(s) 318
SinI GGWCC 1 cut(s) 132
Sse9I AATT 4 cut(s) 337, 373, 420, 480
SsiI CCGC 1 cut(s) 57
StyD4I CCNGG 3 cut(s) 75, 498, 611
TaaI ACNGT 4 cut(s) 54, 197, 682, 762
TaqI TCGA 1 cut(s) 672
TasI AATT 4 cut(s) 337, 373, 420, 480
TauI GCSGC 1 cut(s) 60
Tru1I TTAA 1 cut(s) 651
Tru9I TTAA 1 cut(s) 651
TscAI CASTG 3 cut(s) 109, 202, 319
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 7 cut(s) 26, 29, 60, 68, 71, 407, 658
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 2 cut(s) 96, 399
TspRI CASTG 3 cut(s) 109, 202, 319
Van91I CCANNNNNTGG 1 cut(s) 618
VpaK11BI GGWCC 1 cut(s) 132
XapI RAATTY 1 cut(s) 337
XmnI GAANNNNTTC 1 cut(s) 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.