Rorug06G0139700

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013383
Physical Location & Seq
Forward (+)
19775210 .. 19775581
372 bp
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UTR
Exon/CDS
Intron
Rorug06G0139700.1

Sequence Viewer

Length: 372 bp
ATGGCAGTTCCACAGGTGGGTAATCTGCCACCTAGGTCGGTGGAAGCTTTGGCAATATTGCATGGTTTAAGGTTTGCAGCCCATGTTGGTTTCTCAAATATTGAAATTGAAGGTGATGCTCTCTCCATTATAAATGCCTTGCAAGATAGTTCGGAGGATCTCAGTTTAGAGGGCCATATTATTGACGAAGTTAAAAGTTTAGTTCAGTCTTTATCTATTTGTAGTAGCCATTTTGTGAGACGGGAAGGCAACAAGATTGCTCACCGTTTGGCAAAAAAGGCATTAAAAGTTAGTTTTCCTTTACTTTGCTTAGAGTCAGGGCCTTTATGGCTCCATGAGTTAGTCAGTATAGATTTCCAACGTGGAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009628 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0050896 GO:0071944 GO:0080167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

123

Amino Acids

13.42

Weight (kDa)

6.03

Isoelectric Point (pI)

58.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 11 - 94 2.2e-18 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38210
fragaria_vesca FvH4_2g17030 FvH4_2g17030
malus_domestica MD05G1143200.v1.1 MD10G1143000.v1.1
prunus_persica Prupe.8G182000_v2.0.a1
pyrus_communis pycom05g13770 pycom10g12290
rosa_chinensis RchiOBHm_Chr6g0281211
rosa_laevigata RLG00000012985
rosa_multiflora Rmu_sc0027531.1_g000003
rosa_roxburghii Rroxscaffold_7G00187220
rosa_rugosa Rorug06G0139700
rosa_samantha Rh6AG251600 Rh6BG254900 Rh6CG254400 Rh6DG246200
rosa_wichuraiana Rw6G021850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 131
AclWI GGATC 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 2 cut(s) 104, 110
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 1 cut(s) 165
AoxI GGCC 2 cut(s) 172, 320
ApeKI GCWGC 1 cut(s) 77
AspA2I CCTAGG 1 cut(s) 32
AspS9I GGNCC 2 cut(s) 172, 320
AsuHPI GGTGA 2 cut(s) 125, 254
AvrII CCTAGG 1 cut(s) 32
BbvI GCAGC 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 2 cut(s) 33, 370
BglI GCCNNNNNGGC 1 cut(s) 328
BisI GCNGC 1 cut(s) 78
BlnI CCTAGG 1 cut(s) 32
BlsI GCNGC 1 cut(s) 79
BmgT120I GGNCC 2 cut(s) 172, 320
BmiI GGNNCC 1 cut(s) 332
BmsI GCATC 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 17
BseMII CTCAG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 89
BshFI GGCC 2 cut(s) 174, 322
BslI CCNNNNNNNGG 1 cut(s) 17
BsmAI GTCTC 1 cut(s) 232
BsmBI CGTCTC 1 cut(s) 232
BsnI GGCC 2 cut(s) 174, 322
Bsp143I GATC 1 cut(s) 157
BspANI GGCC 2 cut(s) 174, 322
BspCNI CTCAG 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 332
BspPI GGATC 1 cut(s) 165
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 266
BstDEI CTNAG 2 cut(s) 161, 310
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 278, 328
BstV1I GCAGC 1 cut(s) 89
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BsuRI GGCC 2 cut(s) 174, 322
Cfr13I GGNCC 2 cut(s) 172, 320
CviAII CATG 3 cut(s) 62, 83, 335
CviJI RGCY 6 cut(s) 47, 80, 174, 228, 322, 331
CviKI_1 RGCY 6 cut(s) 47, 80, 174, 228, 322, 331
DdeI CTNAG 2 cut(s) 161, 310
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 32
EcoO109I RGGNCCY 1 cut(s) 320
EcoT14I CCWWGG 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 32
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 3 cut(s) 65, 86, 338
FaiI YATR 7 cut(s) 63, 84, 131, 177, 328, 336, 350
FatI CATG 3 cut(s) 61, 82, 334
Fnu4HI GCNGC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 2 cut(s) 33, 370
GluI GCNGC 1 cut(s) 78
HaeIII GGCC 2 cut(s) 174, 322
Hin1II CATG 3 cut(s) 65, 86, 338
HindIII AAGCTT 1 cut(s) 45
HinfI GANTC 2 cut(s) 314, 366
HphI GGTGA 2 cut(s) 125, 254
Hpy188I TCNGA 1 cut(s) 154
HpyAV CCTTC 2 cut(s) 104, 239
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4IV ACGT 1 cut(s) 361
HpyCH4V TGCA 3 cut(s) 61, 77, 142
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 328
HpyF3I CTNAG 2 cut(s) 161, 310
HpySE526I ACGT 1 cut(s) 361
Hsp92II CATG 3 cut(s) 65, 86, 338
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 336
LpnPI CCDG 1 cut(s) 303
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 1 cut(s) 106
MaeI CTAG 2 cut(s) 33, 370
MaeII ACGT 1 cut(s) 361
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MflI RGATCY 1 cut(s) 157
MluCI AATT 1 cut(s) 105
MlyI GAGTC 1 cut(s) 323
MnlI CCTC 2 cut(s) 148, 163
MseI TTAA 3 cut(s) 68, 192, 284
MwoI GCNNNNNNNGC 2 cut(s) 278, 328
NdeII GATC 1 cut(s) 157
NlaIII CATG 3 cut(s) 65, 86, 338
NlaIV GGNNCC 1 cut(s) 332
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
PsiI TTATAA 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 332
PspPI GGNCC 2 cut(s) 172, 320
PsuI RGATCY 1 cut(s) 157
SaqAI TTAA 3 cut(s) 68, 192, 284
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 2 cut(s) 172, 320
SchI GAGTC 1 cut(s) 323
SetI ASST 7 cut(s) 18, 34, 38, 49, 74, 115, 364
SfaNI GCATC 1 cut(s) 106
Sse9I AATT 1 cut(s) 105
SspI AATATT 2 cut(s) 57, 100
SspMI CTAG 2 cut(s) 33, 370
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 266
TaiI ACGT 1 cut(s) 364
TasI AATT 1 cut(s) 105
Tru1I TTAA 3 cut(s) 68, 192, 284
Tru9I TTAA 3 cut(s) 68, 192, 284
TseI GCWGC 1 cut(s) 77
XmaJI CCTAGG 1 cut(s) 32
XspI CTAG 2 cut(s) 33, 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.