Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012198

Physical Location & Seq

Genomic Coordinates Forward (+)

18527637 .. 18530274

Gene Structure 2638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39952.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2328 bp

ATGTTGCGTCGTCTCTTGAAACCCAATCTTGTTGTTACTCTACGCAAACTCTCTTCTTCTTCCGCAAGCTACGTCGATCGTCATATTAGTGTGATTCTCTGCGATCAGAGCTTGAGCTTAGAGTCTCTGCGCAAACACAACGCTCTTATCATCACCGGAGGACTCTCGGAAAACATCTTCGTCGCATCGAAGCTAATTTCATCTTACGCTTCTTACGGGAAACCCAATTTGTCTTCCAGAGTCTTCCATTTGGTTACTCGAAGAGATATCTTTCTTTGGAATTCTATTATCAAAGCACATTTCTCCAATGGGGATTATGCTCGATCCTTGTGTTTCTTCTTCTCAATGCTCTTGTCTGGCCAATCCCCTGATCATTTCACTGCTCCCATGGTTGTTTCTGCTTGTGCGGAGCTTTTGTGGTTTCATGTTGGGACTTTCGTTCACGGGCTTGTTTTGAAACATGGAGGTTTTGATAGAAACACTGCTGTGGGAGCTTCCTTTGTGTATTTCTACTCAAAGTGTGGGTTTTTACAAGATGCGTGTCTTGTGTTCGACGAAATGCCTGACAGAGATGTTGTTGCTTGGACTGCCATTATATCTGGGCATGTGCAGAACGGCGAGAGCGAGGGAGGTTTGGGTTATCTTTGCAAGATGCATAGTGCTGGTTCTGATGTTGATAAGCCGAATCCCAGAACATTGGAATGCGGATTCCAAGCTTGTTCTAATCTGGGAGCTTTGAAAGAAGGAAGATGTCTTCATGGATTTGCGGTGAAAAATGGTTTAGCTTCTTCCAAGTTTGTCCAGTCTTCCATGTTTTCATTCTATTCGAAATCTGGGAATCCATCCGAGGCTTATCTTTCTTTCCGTGAACTTGGGGATGAAGATATGTTTTCATGGACTTCGATTATAGCGTCACTGGCGAGATCAGGTGACATGGAGGAAAGTTTTGATATGTTCTGGGAAATGCAGAACAAGGGAATGCACCCAGATGGGGTTGTCATTAGCTGTTTGATTAATGAACTAGGTAAGATGATGCTTGTCCCTCAGGGTAAAGCCTTTCACGGGTTCGTCATAAGACATTGTTTCTCTTTAGACAGTACAGTTTGCAATTCCTTGTTATCGATGTACTGCAAATTCGAGCTTCTGTCTGTGGCTGAGAAGCTTTTCTGTAGGATAAGCGAAGAAGGAAACAAAGAAGCTTGGAATACAATGCTTAAAGGCTATGGTAAAATGAAATGTCACGTAAAGTGTATCGAGTTATTTAGAAAAATTCAGAATCTTGGAATTGAAATCGACTCTGCCAGCGCAACCTCTGTCATATCTTCTTGTTCCCACATAGGAGCGGTGCTACTAGGGAAGTCGTTGCATTGCTATGTTGTCAAAACTAGCCTGGATCTTACCATCTCAGTGGTCAATTCCCTCATTGATTTGTATGGAAAAATGGGAGACTTGACTGTAGCTTGGAGGATGTTTTGTGAAGCAGATACTAACGTTATCACTTGGAACGCAATGATTGCGTCTTATGTTCACTGTGAGCAATCCGAAAAAGCCATTGCATTGTTCGATAGAATGGTTTCTGAGAATTTCAAACCCAGCTCAATAACTTTGGTGACTCTGCTTATGGCTTGTGTCAATACTGGCTCTCTGGAGAGAGGACAGATGATTCATCGGTACATCACTGAAACAGAGCACGAGATGAATCTTTCTCTTTCAGCTGCTCTCATTGACATGTACGCGAAATGTGGCCACCTTGAAAAGTCACGAGAACTGTTTGATGCTGGAAATCAGAAGGATGCCGTTTGTTGGAATGTGATGATATCAGGTTATGGAATGCACGGAGATGTTGAATCGGCCATAGCACTTTTTGATCAAATGGAAGAGTCTGATGTTAAACCAACCGGACCTACATTTCTTGCGCTTCTATCGGCTTGCACGCACGCTGGTTTAGTAGAACAAGGGAAAAAACTATTTCTCAAGATGCATCAGTACGATGTGAAACCCAACTTAAAGCATTACTCTTGTCTTGTGGATCTTCTTTCCAGGTCTGGTAATTTGGAGGAAGCTGAAAGCACAGTCATGTCTATGCCATTCTCACCAGACGGGGTCATATGGGGAACATTGTTGAGCTCATGCATGACCCATGGGGAGTTTGAGATGGGAATTCGAATGGCAGAACGTGCGGTTGCTAGTGATCCGCAGAACGATGGGTATTATATAATGCTTGCGAACATGTACAGTGCTGCAGGTAAGTGGGAAGAAGCGGAAAGGGCACGAGAGATGATGAGGGAAAGCGGAGTTGGTAAGAGAGCTGGTCATAGTGTAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

775

Amino Acids

85.83

Weight (kDa)

6.2

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	295 - 342	3.4e-08	PPR repeat family
PPR	PF01535	297 - 326	2.3e-06	PPR repeat
PPR_2	PF13041	497 - 544	7.6e-11	PPR repeat family
PPR	PF01535	499 - 529	1.2e-06	PPR repeat
PPR_2	PF13041	598 - 645	3.8e-11	PPR repeat family
PPR_1	PF12854	598 - 626	3.3e-06	PPR repeat
PPR	PF01535	600 - 629	2e-08	PPR repeat
E_motif	PF20431	714 - 775	2.7e-11	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39952
malus_domestica	MD01G1032300.v1.1 MD15G1322800.v1.1
prunus_persica	Prupe.6G189500_v2.0.a1
pyrus_communis	pycom01g05950 pycom15g28320
rosa_chinensis	RchiOBHm_Chr2g0113061
rosa_laevigata	RLG00000018033
rosa_multiflora	Rmu_sc0005949.1_g000001 Rmu_sc0016776.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130910
rosa_rugosa	Rorug02G0183500 Rorug02G0183600 Rorug02G0183700
rosa_samantha	Rh2AG238700 Rh2BG252500 Rh2CG242700 Rh2DG246700
rosa_wichuraiana	Rw2G018720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	2234
AccBSI	CCGCTC	1 cut(s)	1343
AccII	CGCG	1 cut(s)	1736
AciI	CCGC	9 cut(s)	63, 407, 705, 767, 1343, 2180, 2195, 2261, 2292
AclI	AACGTT	1 cut(s)	1491
AclWI	GGATC	4 cut(s)	318, 1401, 2037, 2186
AcoI	YGGCCR	3 cut(s)	358, 1744, 1851
AcsI	RAATTY	5 cut(s)	280, 1133, 1269, 1582, 2160
AfaI	GTAC	6 cut(s)	1099, 1127, 1673, 1733, 1988, 2234
AfiI	CCNNNNNNNGG	3 cut(s)	991, 1062, 1803
AflIII	ACRYGT	2 cut(s)	1728, 2229
AgsI	TTSAA	7 cut(s)	19, 457, 739, 1289, 1588, 1754, 1847
AjnI	CCWGG	2 cut(s)	1389, 2039
AjuI	GAANNNNNNNTTGG	2 cut(s)	2280, 2312
AleI	CACNNNNGTG	1 cut(s)	485
Alw21I	GWGCWC	2 cut(s)	1692, 2129
Alw26I	GTCTC	3 cut(s)	17, 129, 1440
AlwI	GGATC	4 cut(s)	318, 1401, 2037, 2186
AoxI	GGCC	3 cut(s)	358, 1744, 1851
ApeKI	GCWGC	2 cut(s)	1715, 2240
ApoI	RAATTY	5 cut(s)	280, 1133, 1269, 1582, 2160
AseI	ATTAAT	1 cut(s)	1014
Asp700I	GAANNNNTTC	2 cut(s)	1163, 1573
AspLEI	GCGC	3 cut(s)	132, 1307, 1918
AspS9I	GGNCC	1 cut(s)	1901
AsuHPI	GGTGA	5 cut(s)	145, 781, 941, 1621, 2085
AsuII	TTCGAA	2 cut(s)	827, 2164
AvaII	GGWCC	1 cut(s)	1901
AxyI	CCTNAGG	1 cut(s)	1044
BaeGI	GKGCMC	1 cut(s)	2272
BaeI	ACNNNNGTAYC	2 cut(s)	1476, 1509
BalI	TGGCCA	2 cut(s)	360, 1746
BanII	GRGCYC	1 cut(s)	2129
BauI	CACGAG	3 cut(s)	1691, 1761, 2271
BbsI	GAAGAC	4 cut(s)	225, 235, 746, 798
Bbv12I	GWGCWC	2 cut(s)	1692, 2129
BbvI	GCAGC	2 cut(s)	1702, 2227
BccI	CCATC	5 cut(s)	850, 983, 1409, 2149, 2198
BceAI	ACGGC	2 cut(s)	631, 1781
BciT130I	CCWGG	2 cut(s)	1391, 2041
BclI	TGATCA	2 cut(s)	370, 1867
BcoDI	GTCTC	3 cut(s)	17, 129, 1440
BfaI	CTAG	4 cut(s)	1022, 1352, 1386, 2187
BfmI	CTRYAG	3 cut(s)	1168, 1455, 2241
BfuAI	ACCTGC	1 cut(s)	2234
BisI	GCNGC	2 cut(s)	1716, 2241
BlsI	GCNGC	2 cut(s)	1717, 2242
Bme1390I	CCNGG	2 cut(s)	1391, 2041
Bme18I	GGWCC	1 cut(s)	1901
BmgT120I	GGNCC	1 cut(s)	1901
BmrFI	CCNGG	2 cut(s)	1391, 2041
BmsI	GCATC	8 cut(s)	194, 526, 642, 1023, 1765, 1783, 1968, 1990
BpiI	GAAGAC	4 cut(s)	225, 235, 746, 798
BpmI	CTGGAG	1 cut(s)	1667
Bpu14I	TTCGAA	2 cut(s)	827, 2164
BpuEI	CTTGAG	2 cut(s)	133, 1958
Bsa29I	ATCGAT	1 cut(s)	1121
BsaAI	YACGTR	1 cut(s)	1243
BsaJI	CCNNGG	3 cut(s)	387, 846, 2140
BsaWI	WCCGGW	2 cut(s)	155, 1898
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	3 cut(s)	991, 1062, 1803
Bse1I	ACTGG	3 cut(s)	802, 921, 1642
Bse21I	CCTNAGG	1 cut(s)	1044
Bse3DI	GCAATG	3 cut(s)	1366, 1515, 1551
BseBI	CCWGG	2 cut(s)	1391, 2041
BseCI	ATCGAT	1 cut(s)	1121
BseDI	CCNNGG	3 cut(s)	387, 846, 2140
BseGI	GGATG	4 cut(s)	842, 883, 1473, 1798
BseLI	CCNNNNNNNGG	3 cut(s)	991, 1062, 1803
BseMI	GCAATG	3 cut(s)	1366, 1515, 1551
BseMII	CTCAG	4 cut(s)	1058, 1146, 1419, 1569
BseNI	ACTGG	3 cut(s)	802, 921, 1642
BseSI	GKGCMC	1 cut(s)	2272
BseXI	GCAGC	2 cut(s)	1702, 2227
BseYI	CCCAGC	1 cut(s)	1592
BsgI	GTGCAG	1 cut(s)	629
Bsh1236I	CGCG	1 cut(s)	1736
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	3 cut(s)	360, 1746, 1853
BshVI	ATCGAT	1 cut(s)	1121
BsiEI	CGRYCG	1 cut(s)	79
BsiHKAI	GWGCWC	2 cut(s)	1692, 2129
BsiSI	CCGG	2 cut(s)	156, 1899
BslFI	GGGAC	2 cut(s)	445, 1025
BslI	CCNNNNNNNGG	3 cut(s)	991, 1062, 1803
BsmAI	GTCTC	3 cut(s)	17, 129, 1440
BsmBI	CGTCTC	1 cut(s)	17
BsmFI	GGGAC	2 cut(s)	445, 1025
BsmI	GAATGC	3 cut(s)	707, 984, 1836
BsnI	GGCC	3 cut(s)	360, 1746, 1853
Bsp119I	TTCGAA	2 cut(s)	827, 2164
Bsp1286I	GDGCHC	3 cut(s)	1692, 2129, 2272
Bsp1407I	TGTACA	1 cut(s)	2232
Bsp143I	GATC	9 cut(s)	76, 103, 323, 370, 923, 1393, 1867, 2029, 2191
Bsp19I	CCATGG	2 cut(s)	387, 2140
BspACI	CCGC	9 cut(s)	63, 407, 705, 767, 1343, 2180, 2195, 2261, 2292
BspANI	GGCC	3 cut(s)	360, 1746, 1853
BspCNI	CTCAG	4 cut(s)	1057, 1147, 1418, 1570
BspDI	ATCGAT	1 cut(s)	1121
BspFNI	CGCG	1 cut(s)	1736
BspMAI	CTGCAG	1 cut(s)	2245
BspMI	ACCTGC	1 cut(s)	2234
BspPI	GGATC	4 cut(s)	318, 1401, 2037, 2186
BspT104I	TTCGAA	2 cut(s)	827, 2164
BsrBI	CCGCTC	1 cut(s)	1343
BsrDI	GCAATG	3 cut(s)	1366, 1515, 1551
BsrGI	TGTACA	1 cut(s)	2232
BsrI	ACTGG	3 cut(s)	802, 921, 1642
BssECI	CCNNGG	3 cut(s)	387, 846, 2140
BssMI	GATC	9 cut(s)	76, 103, 323, 370, 923, 1393, 1867, 2029, 2191
BssSI	CACGAG	3 cut(s)	1691, 1761, 2271
BssT1I	CCWWGG	2 cut(s)	387, 2140
Bst2BI	CACGAG	3 cut(s)	1691, 1761, 2271
Bst2UI	CCWGG	2 cut(s)	1391, 2041
Bst4CI	ACNGT	7 cut(s)	1097, 1102, 1456, 1532, 1770, 2074, 2237
Bst6I	CTCTTC	3 cut(s)	58, 256, 1872
BstAPI	GCANNNNNTGC	2 cut(s)	1514, 2177
BstAUI	TGTACA	1 cut(s)	2232
BstBAI	YACGTR	1 cut(s)	1243
BstBI	TTCGAA	2 cut(s)	827, 2164
BstC8I	GCNNGC	6 cut(s)	67, 1303, 1930, 1934, 1938, 2223
BstDEI	CTNAG	5 cut(s)	118, 1044, 1155, 1405, 1578
BstDSI	CCRYGG	2 cut(s)	387, 2140
BstF5I	GGATG	4 cut(s)	842, 883, 1473, 1798
BstFNI	CGCG	1 cut(s)	1736
BstHHI	GCGC	3 cut(s)	132, 1307, 1918
BstKTI	GATC	9 cut(s)	79, 106, 326, 373, 926, 1396, 1870, 2032, 2194
BstMAI	GTCTC	3 cut(s)	17, 129, 1440
BstMBI	GATC	9 cut(s)	76, 103, 323, 370, 923, 1393, 1867, 2029, 2191
BstMCI	CGRYCG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	7 cut(s)	108, 491, 587, 917, 1514, 2177, 2267
BstNI	CCWGG	2 cut(s)	1391, 2041
BstNSI	RCATGY	3 cut(s)	608, 1732, 2233
BstSCI	CCNGG	2 cut(s)	1389, 2039
BstSFI	CTRYAG	3 cut(s)	1168, 1455, 2241
BstSLI	GKGCMC	1 cut(s)	2272
BstUI	CGCG	1 cut(s)	1736
BstV1I	GCAGC	2 cut(s)	1702, 2227
BstV2I	GAAGAC	4 cut(s)	225, 235, 746, 798
BstX2I	RGATCY	2 cut(s)	1393, 2029
BstXI	CCANNNNNNTGG	2 cut(s)	697, 1408
BstYI	RGATCY	2 cut(s)	1393, 2029
Bsu15I	ATCGAT	1 cut(s)	1121
Bsu36I	CCTNAGG	1 cut(s)	1044
BsuRI	GGCC	3 cut(s)	360, 1746, 1853
BsuTUI	ATCGAT	1 cut(s)	1121
BtgI	CCRYGG	2 cut(s)	387, 2140
BtsCI	GGATG	4 cut(s)	842, 883, 1473, 1798
BtsI	GCAGTG	2 cut(s)	378, 480
BtsIMutI	CAGTG	7 cut(s)	378, 480, 914, 1413, 1528, 1677, 2242
BveI	ACCTGC	1 cut(s)	2234
Cac8I	GCNNGC	6 cut(s)	67, 1303, 1930, 1934, 1938, 2223
CfoI	GCGC	3 cut(s)	132, 1307, 1918
Cfr13I	GGNCC	1 cut(s)	1901
ClaI	ATCGAT	1 cut(s)	1121
CseI	GACGC	2 cut(s)	900, 1506
Csp6I	GTAC	6 cut(s)	1098, 1126, 1672, 1732, 1987, 2233
CviQI	GTAC	6 cut(s)	1098, 1126, 1672, 1732, 1987, 2233
DdeI	CTNAG	5 cut(s)	118, 1044, 1155, 1405, 1578
DpnI	GATC	9 cut(s)	78, 105, 325, 372, 925, 1395, 1869, 2031, 2193
DpnII	GATC	9 cut(s)	76, 103, 323, 370, 923, 1393, 1867, 2029, 2191
EaeI	YGGCCR	3 cut(s)	358, 1744, 1851
Eam1104I	CTCTTC	3 cut(s)	58, 256, 1872
EarI	CTCTTC	3 cut(s)	58, 256, 1872
Ecl136II	GAGCTC	1 cut(s)	2127
Eco130I	CCWWGG	2 cut(s)	387, 2140
Eco24I	GRGCYC	1 cut(s)	2129
Eco32I	GATATC	2 cut(s)	268, 1818
Eco47I	GGWCC	1 cut(s)	1901
Eco53kI	GAGCTC	1 cut(s)	2127
Eco81I	CCTNAGG	1 cut(s)	1044
EcoICRI	GAGCTC	1 cut(s)	2127
EcoRI	GAATTC	2 cut(s)	280, 2160
EcoRII	CCWGG	2 cut(s)	1389, 2039
EcoRV	GATATC	2 cut(s)	268, 1818
EcoT14I	CCWWGG	2 cut(s)	387, 2140
EcoT22I	ATGCAT	3 cut(s)	657, 1983, 2135
EcoT38I	GRGCYC	1 cut(s)	2129
ErhI	CCWWGG	2 cut(s)	387, 2140
Esp3I	CGTCTC	1 cut(s)	17
FaqI	GGGAC	2 cut(s)	445, 1025
FauNDI	CATATG	1 cut(s)	2108
FbaI	TGATCA	2 cut(s)	370, 1867
Fnu4HI	GCNGC	2 cut(s)	1716, 2241
FokI	GGATG	4 cut(s)	829, 890, 1480, 1805
FriOI	GRGCYC	1 cut(s)	2129
Fsp4HI	GCNGC	2 cut(s)	1716, 2241
FspBI	CTAG	4 cut(s)	1022, 1352, 1386, 2187
FspI	TGCGCA	1 cut(s)	131
GlaI	GCGC	3 cut(s)	131, 1306, 1917
GluI	GCNGC	2 cut(s)	1716, 2241
GsaI	CCCAGC	1 cut(s)	1596
GsuI	CTGGAG	1 cut(s)	1667
HaeIII	GGCC	3 cut(s)	360, 1746, 1853
HapII	CCGG	2 cut(s)	156, 1899
HgaI	GACGC	2 cut(s)	900, 1506
HhaI	GCGC	3 cut(s)	132, 1307, 1918
Hin6I	GCGC	3 cut(s)	130, 1305, 1916
HinP1I	GCGC	3 cut(s)	130, 1305, 1916
HindIII	AAGCTT	3 cut(s)	714, 1160, 1197
HpaII	CCGG	2 cut(s)	156, 1899
HphI	GGTGA	5 cut(s)	145, 781, 941, 1621, 2085
Hpy166II	GTNNAC	3 cut(s)	442, 869, 1528
Hpy188I	TCNGA	9 cut(s)	108, 169, 670, 847, 1275, 1543, 1579, 1788, 1885
Hpy188III	TCNNGA	5 cut(s)	16, 237, 1646, 1761, 1975
Hpy8I	GTNNAC	3 cut(s)	442, 869, 1528
Hpy99I	CGWCG	4 cut(s)	12, 77, 185, 557
HpyAV	CCTTC	3 cut(s)	737, 1178, 1783
HpyCH4III	ACNGT	7 cut(s)	1097, 1102, 1456, 1532, 1770, 2074, 2237
HpyCH4IV	ACGT	4 cut(s)	72, 1242, 1491, 2176
HpyF10VI	GCNNNNNNNGC	7 cut(s)	108, 491, 587, 917, 1514, 2177, 2267
HpyF3I	CTNAG	5 cut(s)	118, 1044, 1155, 1405, 1578
HpySE526I	ACGT	4 cut(s)	72, 1242, 1491, 2176
HspAI	GCGC	3 cut(s)	130, 1305, 1916
Ksp22I	TGATCA	2 cut(s)	370, 1867
Kzo9I	GATC	9 cut(s)	76, 103, 323, 370, 923, 1393, 1867, 2029, 2191
LmnI	GCTCC	5 cut(s)	388, 409, 491, 731, 1340
Lsp1109I	GCAGC	2 cut(s)	1702, 2227
LweI	GCATC	8 cut(s)	194, 526, 642, 1023, 1765, 1783, 1968, 1990
MaeI	CTAG	4 cut(s)	1022, 1352, 1386, 2187
MaeII	ACGT	4 cut(s)	72, 1242, 1491, 2176
MaeIII	GTNAC	7 cut(s)	34, 253, 912, 929, 1238, 1609, 1758
MalI	GATC	9 cut(s)	78, 105, 325, 372, 925, 1395, 1869, 2031, 2193
MbiI	CCGCTC	1 cut(s)	1343
MboI	GATC	9 cut(s)	76, 103, 323, 370, 923, 1393, 1867, 2029, 2191
MflI	RGATCY	2 cut(s)	1393, 2029
MhlI	GDGCHC	3 cut(s)	1692, 2129, 2272
MlsI	TGGCCA	2 cut(s)	360, 1746
MluNI	TGGCCA	2 cut(s)	360, 1746
MlyI	GAGTC	6 cut(s)	131, 156, 249, 1289, 1606, 1889
MmeI	TCCRAC	1 cut(s)	1784
Mox20I	TGGCCA	2 cut(s)	360, 1746
Mph1103I	ATGCAT	3 cut(s)	657, 1983, 2135
MroXI	GAANNNNTTC	2 cut(s)	1163, 1573
MscI	TGGCCA	2 cut(s)	360, 1746
MseI	TTAA	4 cut(s)	1014, 1215, 1890, 2006
Msp20I	TGGCCA	2 cut(s)	360, 1746
MspA1I	CMGCKG	1 cut(s)	1715
MspI	CCGG	2 cut(s)	156, 1899
MspR9I	CCNGG	2 cut(s)	1391, 2041
Mva1269I	GAATGC	3 cut(s)	707, 984, 1836
MvaI	CCWGG	2 cut(s)	1391, 2041
MvnI	CGCG	1 cut(s)	1736
MwoI	GCNNNNNNNGC	7 cut(s)	108, 491, 587, 917, 1514, 2177, 2267
NcoI	CCATGG	2 cut(s)	387, 2140
NdeI	CATATG	1 cut(s)	2108
NdeII	GATC	9 cut(s)	76, 103, 323, 370, 923, 1393, 1867, 2029, 2191
NmuCI	GTSAC	5 cut(s)	912, 929, 1238, 1609, 1758
NsbI	TGCGCA	1 cut(s)	131
NsiI	ATGCAT	3 cut(s)	657, 1983, 2135
NspI	RCATGY	3 cut(s)	608, 1732, 2233
NspV	TTCGAA	2 cut(s)	827, 2164
OliI	CACNNNNGTG	1 cut(s)	485
PciI	ACATGT	2 cut(s)	1728, 2229
PcsI	WCGNNNNNNNCGW	2 cut(s)	621, 908
PctI	GAATGC	3 cut(s)	707, 984, 1836
PdmI	GAANNNNTTC	2 cut(s)	1163, 1573
PfeI	GAWTC	8 cut(s)	94, 685, 708, 838, 1276, 1663, 1699, 1847
PflFI	GACNNNGTC	1 cut(s)	2102
PkrI	GCNGC	2 cut(s)	1717, 2242
Ple19I	CGATCG	1 cut(s)	79
PleI	GAGTC	6 cut(s)	130, 156, 248, 1289, 1606, 1888
PpsI	GAGTC	6 cut(s)	130, 156, 248, 1289, 1606, 1888
Ppu21I	YACGTR	1 cut(s)	1243
PscI	ACATGT	2 cut(s)	1728, 2229
PshBI	ATTAAT	1 cut(s)	1014
Psp124BI	GAGCTC	1 cut(s)	2129
Psp1406I	AACGTT	1 cut(s)	1491
Psp6I	CCWGG	2 cut(s)	1389, 2039
PspFI	CCCAGC	1 cut(s)	1592
PspGI	CCWGG	2 cut(s)	1389, 2039
PspPI	GGNCC	1 cut(s)	1901
PstI	CTGCAG	1 cut(s)	2245
PsuI	RGATCY	2 cut(s)	1393, 2029
PsyI	GACNNNGTC	1 cut(s)	2102
PvuI	CGATCG	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	1715
RsaI	GTAC	6 cut(s)	1099, 1127, 1673, 1733, 1988, 2234
RsaNI	GTAC	6 cut(s)	1098, 1126, 1672, 1732, 1987, 2233
SacI	GAGCTC	1 cut(s)	2129
SaqAI	TTAA	4 cut(s)	1014, 1215, 1890, 2006
SatI	GCNGC	2 cut(s)	1716, 2241
Sau3AI	GATC	9 cut(s)	76, 103, 323, 370, 923, 1393, 1867, 2029, 2191
Sau96I	GGNCC	1 cut(s)	1901
SchI	GAGTC	6 cut(s)	131, 156, 249, 1289, 1606, 1889
ScrFI	CCNGG	2 cut(s)	1391, 2041
SduI	GDGCHC	3 cut(s)	1692, 2129, 2272
SfaNI	GCATC	8 cut(s)	194, 526, 642, 1023, 1765, 1783, 1968, 1990
SfcI	CTRYAG	3 cut(s)	1168, 1455, 2241
SfuI	TTCGAA	2 cut(s)	827, 2164
SinI	GGWCC	1 cut(s)	1901
SmlI	CTYRAG	2 cut(s)	112, 1973
SmoI	CTYRAG	2 cut(s)	112, 1973
SsiI	CCGC	9 cut(s)	63, 407, 705, 767, 1343, 2180, 2195, 2261, 2292
SspMI	CTAG	4 cut(s)	1022, 1352, 1386, 2187
SstI	GAGCTC	1 cut(s)	2129
StyD4I	CCNGG	2 cut(s)	1389, 2039
StyI	CCWWGG	2 cut(s)	387, 2140
TaaI	ACNGT	7 cut(s)	1097, 1102, 1456, 1532, 1770, 2074, 2237
TaiI	ACGT	4 cut(s)	75, 1245, 1494, 2179
TatI	WGTACW	3 cut(s)	1097, 1125, 2232
TfiI	GAWTC	8 cut(s)	94, 685, 708, 838, 1276, 1663, 1699, 1847
Tru1I	TTAA	4 cut(s)	1014, 1215, 1890, 2006
Tru9I	TTAA	4 cut(s)	1014, 1215, 1890, 2006
TscAI	CASTG	7 cut(s)	385, 487, 921, 1413, 1535, 1684, 2242
TseFI	GTSAC	5 cut(s)	912, 929, 1238, 1609, 1758
TseI	GCWGC	2 cut(s)	1715, 2240
Tsp45I	GTSAC	5 cut(s)	912, 929, 1238, 1609, 1758
TspGWI	ACGGA	2 cut(s)	854, 1851
TspRI	CASTG	7 cut(s)	385, 487, 921, 1413, 1535, 1684, 2242
Tth111I	GACNNNGTC	1 cut(s)	2102
VpaK11BI	GGWCC	1 cut(s)	1901
VspI	ATTAAT	1 cut(s)	1014
XapI	RAATTY	5 cut(s)	280, 1133, 1269, 1582, 2160
XceI	RCATGY	3 cut(s)	608, 1732, 2233
XmnI	GAANNNNTTC	2 cut(s)	1163, 1573
XspI	CTAG	4 cut(s)	1022, 1352, 1386, 2187
Zsp2I	ATGCAT	3 cut(s)	657, 1983, 2135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.