Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0012198

Physical Location & Seq

Genomic Coordinates Forward (+)

11281299 .. 11283644

Gene Structure 2346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1032300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2346 bp

ATGTTTAACCTCAGACACAAATCCCTCCACTTGTTCAAACACCTTCCCTCCTCCTCCTCTCTTCCATTTTCTTCACTCTCCGCTTCTAATTACGTTAACTACCATCTCGATTCTTTCCTCTCCAACCAGATTCCAACCTTCCAGCATCTCTCTCAATCCCACGCTCTCATCATCACTTCTGCAAACTCAAACAACATCTTCATATGCGCAAAGCTCATCTCTCTCTACGCGTCTCTCTCCAAACCCACTTCTTCCACCAAAGTATTCGCTTCGGTTTCTCCCAAGGATACCTTTCTTTGGAACTCTATAATCAAAACCCATTTCTCCAATGGCGGCTACTCCAAAGCCCTCGTTTTCTTTTTCCAAATGCGGGCTTCTGGTTTTGCTCCTAACCAATTTACTCTTCCAATGGTGGTTTCCTCGTGCGCTGAGTTAATGGTGCTTGACCATGGCAACAATGTTCATGGGTTGGGTAAGAAGCTCGGGCTCTTCGCTGGTAATTCGGCGGTTGGCTCTTCTTTTGTGTATATGTATTCAAAGTGTGGTCGAATGGAGGATGCATCTATTATGTTTGATGAAATTACTGTGAGAGATGTGGTTTGTTGGACCGCGCTTATAATTGGGTATGTGCAGAATGATGAGAGTGAGAAGGGTTTGGAGTGTCTTTGTGAGATGCACAGGATCGGTGGCATTGGTGAGAGGCCAAATTTCAGAACGTTGGAAGTTGGTCTTCAAGCTTGTGGGGATCTGGGTGCTTTAGTAGAAGGTAGATGCTTGCATGGTTTTGTAGTAAAAAGGGGAATTGGGTGTTCTGGAGCTGTTAAATCTTTGCTTTTGTCCATGTATTCCAGATGCGGGAGACCTGAAGAATCTTATCTTTCGTTTTGTGACATAGAAAATAAAGATGTTATATCTTGGACGTCAGTTATCGGTGTTTATGCTAGATCTGGGTTAATGGATGGATGCTTAAGTTTGTTTTGGGAAATGCAGGATAGTGATATTTTCCCAGATGAAATTGTTGTCAGTTGCATGCTTTCAGGTTTTCGAAATTCCACAAATATCAATGAAGGAAAGGCCTTCCTAGGATTAGTCACGAGGCAGAATTATGCATCGAGTCAGGTGGTTCATAGTGAACTACTGTCCATGTACTGCAAGTTTGAGTTGTTGACTCTTGCCGAGAAGCTCTTCAGCGGAATGCAGCACCAGAACAAAGAGTCTTGTAACACTATGATTTATGGCTATGGTAAGCTGGGACTGCGTACAAAATGCATAGAACTGTTTAGGAAGATGCGACATCAAGGCATTGAAGCTGATTCTAATAGCTTGGTATCTGTGGTTTCTTCGTGTTTCCAGATGGGAACAATCCATCTTGGCCAATCACTTCATTGCTTTATAATTAAGGTTTGTATGGATGAAAATGTCTCAGTAGCCAACTCACTCATAGACATGTATGGAAAAAGTGGTTATTTGACCATTGCAAGGAGAATTTTTTCTGTGACACAGAAGGATATTATAACATGGAACTCATTGATCTCATCGTACACTCACAATGGACATTCTTTCGAGGCCATAGACCTATATCATAAGATGATTGCAGAAAACTTCATGCCCAACTCAGCGACATTGGTAACAGTGCTTTCAGCTTGCTCTCATCTCGCATCTCTGGAAGAAGGAATAAAGGTTCATTGTCACATTAAGGAAAGACGTATTGGGAACAATTTATCCCTTTCAACTGCATTAGTTGATATGTATGCAAAATGTGGGGAACTTGAGAAATCAAGAGAATTGTTCAACTCAATGGAAGATAGGGATGTTATTTCCTGGAATGTCATGATCTCAGGTTATGCAACACATGGACATGCAGAATCTGCAATAGAACTATTCCACGAGATGGAAGATTCAAATGTTATACCGAACGAACTCACCTTTCTTGCTCTTCTCTCAGCCTGTAATCATTCAGGGCTGGTTGAAGAAGGGAAATATCTGTTTCGTAAAATGCAAGATCTTTCCCTAAACCCAAATTTGAAGCACTATGCTTGTATGGTAGATATTCTTGGCAGGTCCGGTAATCTGCAAGAAGCTGAAGATTTGGTTCTGTCAATGCCCATATCTCCTGATGGTGGTGTGTGGGGATCATTATTAGGTGCCTGTAAGATTCACAATGAAATTGAGTTGGGCGTAAGGGTTGCAAGGCATGCCATAAAATCTGATCCAGAAAATGATGGCTACTATGTAATGCTTTCAAACTTGTATGGTTCTATTGGGAAATGGGAGGAGGCTATAAATGTGAGAAAAATGATGGAGGAAAAGGGCGTCGGAACGACAAAGGGTTGGAGTGTAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

782

Amino Acids

86.62

Weight (kDa)

6.3

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	95 - 143	3.1e-06	PPR repeat family
PPR_2	PF13041	301 - 348	1.2e-07	PPR repeat family
PPR	PF01535	304 - 333	3.3e-06	PPR repeat
PPR_2	PF13041	502 - 550	7.1e-10	PPR repeat family
PPR	PF01535	505 - 534	7.7e-07	PPR repeat
PPR_long	PF17177	517 - 654	1.8e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	603 - 650	2e-13	PPR repeat family
PPR	PF01535	606 - 636	6.8e-08	PPR repeat
E_motif	PF20431	720 - 779	3.4e-08	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39952
malus_domestica	MD01G1032300.v1.1 MD15G1322800.v1.1
prunus_persica	Prupe.6G189500_v2.0.a1
pyrus_communis	pycom01g05950 pycom15g28320
rosa_chinensis	RchiOBHm_Chr2g0113061
rosa_laevigata	RLG00000018033
rosa_multiflora	Rmu_sc0005949.1_g000001 Rmu_sc0016776.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130910
rosa_rugosa	Rorug02G0183500 Rorug02G0183600 Rorug02G0183700
rosa_samantha	Rh2AG238700 Rh2BG252500 Rh2CG242700 Rh2DG246700
rosa_wichuraiana	Rw2G018720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	617, 1394, 1514
AatII	GACGTC	1 cut(s)	923
Acc16I	TGCGCA	1 cut(s)	208
Acc36I	ACCTGC	1 cut(s)	2049
AccB1I	GGYRCC	1 cut(s)	2144
AccB7I	CCANNNNNTGG	1 cut(s)	1891
AccII	CGCG	2 cut(s)	230, 611
AciI	CCGC	7 cut(s)	81, 333, 370, 506, 609, 855, 1191
AclI	AACGTT	1 cut(s)	716
AclWI	GGATC	4 cut(s)	689, 753, 2140, 2204
AcoI	YGGCCR	1 cut(s)	1372
AcsI	RAATTY	4 cut(s)	706, 1048, 1485, 2020
AcuI	CTGAAG	3 cut(s)	885, 1171, 2103
AcyI	GRCGYC	2 cut(s)	920, 2313
AfaI	GTAC	3 cut(s)	1148, 1261, 1541
AfiI	CCNNNNNNNGG	6 cut(s)	297, 370, 855, 1479, 1891, 2120
AflII	CTTAAG	1 cut(s)	967
AflIII	ACRYGT	2 cut(s)	228, 1446
AjnI	CCWGG	1 cut(s)	1820
AjuI	GAANNNNNNNTTGG	6 cut(s)	387, 400, 419, 432, 1692, 1724
AloI	GAACNNNNNNTCC	4 cut(s)	1665, 1697, 1706, 1738
Alw26I	GTCTC	3 cut(s)	237, 853, 1426
AlwI	GGATC	4 cut(s)	689, 753, 2140, 2204
AlwNI	CAGNNNCTG	1 cut(s)	1868
Ama87I	CYCGRG	1 cut(s)	482
AoxI	GGCC	4 cut(s)	701, 1074, 1372, 1566
ApeKI	GCWGC	1 cut(s)	1198
ApoI	RAATTY	4 cut(s)	706, 1048, 1485, 2020
Asp700I	GAANNNNTTC	2 cut(s)	1184, 1489
AspA2I	CCTAGG	1 cut(s)	1081
AspLEI	GCGC	3 cut(s)	209, 428, 613
AspS9I	GGNCC	2 cut(s)	606, 2061
AsuHPI	GGTGA	2 cut(s)	707, 1915
AsuII	TTCGAA	1 cut(s)	1045
AvaI	CYCGRG	1 cut(s)	482
AvaII	GGWCC	2 cut(s)	606, 2061
AvrII	CCTAGG	1 cut(s)	1081
BalI	TGGCCA	1 cut(s)	1374
BanI	GGYRCC	1 cut(s)	2144
BanII	GRGCYC	1 cut(s)	489
BauI	CACGAG	3 cut(s)	421, 1093, 1886
BbsI	GAAGAC	1 cut(s)	722
BbvI	GCAGC	1 cut(s)	1210
BccI	CCATC	8 cut(s)	111, 953, 1348, 1374, 1885, 2111, 2216, 2293
BciT130I	CCWGG	1 cut(s)	1822
BciVI	GTATCC	1 cut(s)	280
BcoDI	GTCTC	3 cut(s)	237, 853, 1426
BfaI	CTAG	2 cut(s)	942, 1082
BfrI	CTTAAG	1 cut(s)	967
BfuAI	ACCTGC	1 cut(s)	2049
BfuI	GTATCC	1 cut(s)	280
BglII	AGATCT	2 cut(s)	944, 2002
BisI	GCNGC	2 cut(s)	334, 1199
BlnI	CCTAGG	1 cut(s)	1081
BlsI	GCNGC	2 cut(s)	335, 1200
Bme1390I	CCNGG	1 cut(s)	1822
Bme18I	GGWCC	2 cut(s)	606, 2061
BmeT110I	CYCGRG	1 cut(s)	482
BmgT120I	GGNCC	2 cut(s)	606, 2061
BmiI	GGNNCC	1 cut(s)	2146
BmrFI	CCNGG	1 cut(s)	1822
BpiI	GAAGAC	1 cut(s)	722
BpmI	CTGGAG	1 cut(s)	834
Bpu14I	TTCGAA	1 cut(s)	1045
BpuEI	CTTGAG	1 cut(s)	1790
BsaHI	GRCGYC	2 cut(s)	920, 2313
BsaI	GGTCTC	1 cut(s)	853
BsaJI	CCNNGG	3 cut(s)	282, 448, 1081
BsaWI	WCCGGW	1 cut(s)	2063
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	6 cut(s)	297, 370, 855, 1479, 1891, 2120
Bse3DI	GCAATG	2 cut(s)	1384, 1473
BseBI	CCWGG	1 cut(s)	1822
BseDI	CCNNGG	3 cut(s)	282, 448, 1081
BseGI	GGATG	5 cut(s)	562, 964, 968, 1417, 1816
BseLI	CCNNNNNNNGG	6 cut(s)	297, 370, 855, 1479, 1891, 2120
BseMI	GCAATG	2 cut(s)	1384, 1473
BseMII	CTCAG	6 cut(s)	25, 420, 1437, 1629, 1851, 1956
BseRI	GAGGAG	4 cut(s)	40, 43, 46, 2288
BseXI	GCAGC	1 cut(s)	1210
BseYI	CCCAGC	1 cut(s)	1249
BsgI	GTGCAG	1 cut(s)	650
Bsh1236I	CGCG	2 cut(s)	230, 611
BshFI	GGCC	4 cut(s)	703, 1076, 1374, 1568
BshNI	GGYRCC	1 cut(s)	2144
BsiHKCI	CYCGRG	1 cut(s)	482
BsiSI	CCGG	1 cut(s)	2064
BslFI	GGGAC	1 cut(s)	1266
BslI	CCNNNNNNNGG	6 cut(s)	297, 370, 855, 1479, 1891, 2120
BsmAI	GTCTC	3 cut(s)	237, 853, 1426
BsmBI	CGTCTC	1 cut(s)	237
BsmFI	GGGAC	1 cut(s)	1266
BsmI	GAATGC	1 cut(s)	1200
BsnI	GGCC	4 cut(s)	703, 1076, 1374, 1568
Bso31I	GGTCTC	1 cut(s)	853
BsoBI	CYCGRG	1 cut(s)	482
Bsp119I	TTCGAA	1 cut(s)	1045
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp143I	GATC	8 cut(s)	681, 745, 944, 1530, 1833, 2002, 2132, 2209
Bsp19I	CCATGG	1 cut(s)	448
BspACI	CCGC	7 cut(s)	81, 333, 370, 506, 609, 855, 1191
BspANI	GGCC	4 cut(s)	703, 1076, 1374, 1568
BspCNI	CTCAG	6 cut(s)	24, 421, 1436, 1628, 1850, 1955
BspFNI	CGCG	2 cut(s)	230, 611
BspHI	TCATGA	1 cut(s)	1830
BspLI	GGNNCC	1 cut(s)	2146
BspMI	ACCTGC	1 cut(s)	2049
BspPI	GGATC	4 cut(s)	689, 753, 2140, 2204
BspQI	GCTCTTC	4 cut(s)	494, 520, 1190, 1941
BspT104I	TTCGAA	1 cut(s)	1045
BspT107I	GGYRCC	1 cut(s)	2144
BspTI	CTTAAG	1 cut(s)	967
BspTNI	GGTCTC	1 cut(s)	853
BsrDI	GCAATG	2 cut(s)	1384, 1473
BssECI	CCNNGG	3 cut(s)	282, 448, 1081
BssMI	GATC	8 cut(s)	681, 745, 944, 1530, 1833, 2002, 2132, 2209
BssNI	GRCGYC	2 cut(s)	920, 2313
BssSI	CACGAG	3 cut(s)	421, 1093, 1886
BssT1I	CCWWGG	3 cut(s)	282, 448, 1081
Bst2BI	CACGAG	3 cut(s)	421, 1093, 1886
Bst2UI	CCWGG	1 cut(s)	1822
Bst4CI	ACNGT	4 cut(s)	586, 1140, 1278, 1633
Bst6I	CTCTTC	6 cut(s)	66, 408, 494, 520, 1190, 1941
BstACI	GRCGYC	2 cut(s)	920, 2313
BstAFI	CTTAAG	1 cut(s)	967
BstAPI	GCANNNNNTGC	2 cut(s)	1868, 2195
BstBI	TTCGAA	1 cut(s)	1045
BstC8I	GCNNGC	5 cut(s)	372, 776, 1031, 1645, 2196
BstDEI	CTNAG	6 cut(s)	11, 429, 1423, 1615, 1837, 1942
BstDSI	CCRYGG	1 cut(s)	448
BstF5I	GGATG	5 cut(s)	562, 964, 968, 1417, 1816
BstFNI	CGCG	2 cut(s)	230, 611
BstHHI	GCGC	3 cut(s)	209, 428, 613
BstKTI	GATC	8 cut(s)	684, 748, 947, 1533, 1836, 2005, 2135, 2212
BstMAI	GTCTC	3 cut(s)	237, 853, 1426
BstMBI	GATC	8 cut(s)	681, 745, 944, 1530, 1833, 2002, 2132, 2209
BstMWI	GCNNNNNNNGC	3 cut(s)	1255, 1868, 2195
BstNI	CCWGG	1 cut(s)	1822
BstNSI	RCATGY	4 cut(s)	1033, 1450, 1862, 2198
BstSCI	CCNGG	1 cut(s)	1820
BstUI	CGCG	2 cut(s)	230, 611
BstV1I	GCAGC	1 cut(s)	1210
BstV2I	GAAGAC	1 cut(s)	722
BstX2I	RGATCY	3 cut(s)	745, 944, 2002
BstYI	RGATCY	3 cut(s)	745, 944, 2002
BsuI	GTATCC	1 cut(s)	280
BsuRI	GGCC	4 cut(s)	703, 1076, 1374, 1568
BtgI	CCRYGG	1 cut(s)	448
BtsCI	GGATG	5 cut(s)	562, 964, 968, 1417, 1816
BtsIMutI	CAGTG	1 cut(s)	1638
BveI	ACCTGC	1 cut(s)	2049
Cac8I	GCNNGC	5 cut(s)	372, 776, 1031, 1645, 2196
CaiI	CAGNNNCTG	1 cut(s)	1868
CciI	TCATGA	1 cut(s)	1830
CfoI	GCGC	3 cut(s)	209, 428, 613
Cfr13I	GGNCC	2 cut(s)	606, 2061
CseI	GACGC	2 cut(s)	219, 2302
Csp6I	GTAC	3 cut(s)	1147, 1260, 1540
CviQI	GTAC	3 cut(s)	1147, 1260, 1540
DdeI	CTNAG	6 cut(s)	11, 429, 1423, 1615, 1837, 1942
DpnI	GATC	8 cut(s)	683, 747, 946, 1532, 1835, 2004, 2134, 2211
DpnII	GATC	8 cut(s)	681, 745, 944, 1530, 1833, 2002, 2132, 2209
EaeI	YGGCCR	1 cut(s)	1372
Eam1104I	CTCTTC	6 cut(s)	66, 408, 494, 520, 1190, 1941
EarI	CTCTTC	6 cut(s)	66, 408, 494, 520, 1190, 1941
Eco130I	CCWWGG	3 cut(s)	282, 448, 1081
Eco147I	AGGCCT	1 cut(s)	1076
Eco24I	GRGCYC	1 cut(s)	489
Eco31I	GGTCTC	1 cut(s)	853
Eco47I	GGWCC	2 cut(s)	606, 2061
Eco57I	CTGAAG	3 cut(s)	885, 1171, 2103
Eco88I	CYCGRG	1 cut(s)	482
EcoRII	CCWGG	1 cut(s)	1820
EcoT14I	CCWWGG	3 cut(s)	282, 448, 1081
EcoT22I	ATGCAT	3 cut(s)	562, 1111, 1271
EcoT38I	GRGCYC	1 cut(s)	489
ErhI	CCWWGG	3 cut(s)	282, 448, 1081
Esp3I	CGTCTC	1 cut(s)	237
FalI	AAGNNNNNCTT	4 cut(s)	275, 307, 714, 746
FaqI	GGGAC	1 cut(s)	1266
FauI	CCCGC	2 cut(s)	363, 848
FauNDI	CATATG	1 cut(s)	203
Fnu4HI	GCNGC	2 cut(s)	334, 1199
FokI	GGATG	5 cut(s)	569, 971, 975, 1424, 1823
FriOI	GRGCYC	1 cut(s)	489
Fsp4HI	GCNGC	2 cut(s)	334, 1199
FspBI	CTAG	2 cut(s)	942, 1082
FspI	TGCGCA	1 cut(s)	208
GlaI	GCGC	3 cut(s)	208, 427, 612
GluI	GCNGC	2 cut(s)	334, 1199
GsaI	CCCAGC	1 cut(s)	1253
GsuI	CTGGAG	1 cut(s)	834
HaeIII	GGCC	4 cut(s)	703, 1076, 1374, 1568
HapII	CCGG	1 cut(s)	2064
HgaI	GACGC	2 cut(s)	219, 2302
HhaI	GCGC	3 cut(s)	209, 428, 613
Hin1I	GRCGYC	2 cut(s)	920, 2313
Hin6I	GCGC	3 cut(s)	207, 426, 611
HinP1I	GCGC	3 cut(s)	207, 426, 611
HincII	GTYRAC	2 cut(s)	97, 1167
HindII	GTYRAC	2 cut(s)	97, 1167
HindIII	AAGCTT	1 cut(s)	735
HpaI	GTTAAC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	2064
HphI	GGTGA	2 cut(s)	707, 1915
Hpy166II	GTNNAC	4 cut(s)	97, 1133, 1167, 1542
Hpy188I	TCNGA	4 cut(s)	14, 713, 2209, 2318
Hpy8I	GTNNAC	4 cut(s)	97, 1133, 1167, 1542
Hpy99I	CGWCG	1 cut(s)	2318
HpyAV	CCTTC	9 cut(s)	53, 148, 643, 758, 1061, 1087, 1498, 1664, 1967
HpyCH4III	ACNGT	4 cut(s)	586, 1140, 1278, 1633
HpyCH4IV	ACGT	4 cut(s)	93, 716, 920, 1705
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1255, 1868, 2195
HpyF3I	CTNAG	6 cut(s)	11, 429, 1423, 1615, 1837, 1942
HpySE526I	ACGT	4 cut(s)	93, 716, 920, 1705
Hsp92I	GRCGYC	2 cut(s)	920, 2313
HspAI	GCGC	3 cut(s)	207, 426, 611
KspAI	GTTAAC	1 cut(s)	97
Kzo9I	GATC	8 cut(s)	681, 745, 944, 1530, 1833, 2002, 2132, 2209
LguI	GCTCTTC	4 cut(s)	494, 520, 1190, 1941
LmnI	GCTCC	2 cut(s)	391, 815
Lsp1109I	GCAGC	1 cut(s)	1210
MaeI	CTAG	2 cut(s)	942, 1082
MaeII	ACGT	4 cut(s)	93, 716, 920, 1705
MaeIII	GTNAC	6 cut(s)	887, 1090, 1220, 1495, 1627, 1688
MalI	GATC	8 cut(s)	683, 747, 946, 1532, 1835, 2004, 2134, 2211
MboI	GATC	8 cut(s)	681, 745, 944, 1530, 1833, 2002, 2132, 2209
MflI	RGATCY	3 cut(s)	745, 944, 2002
MhlI	GDGCHC	1 cut(s)	489
MlsI	TGGCCA	1 cut(s)	1374
MluI	ACGCGT	1 cut(s)	228
MluNI	TGGCCA	1 cut(s)	1374
MlyI	GAGTC	3 cut(s)	1123, 1162, 1223
MmeI	TCCRAC	6 cut(s)	147, 158, 584, 699, 2296, 2312
Mox20I	TGGCCA	1 cut(s)	1374
Mph1103I	ATGCAT	3 cut(s)	562, 1111, 1271
MroXI	GAANNNNTTC	2 cut(s)	1184, 1489
MscI	TGGCCA	1 cut(s)	1374
MseI	TTAA	8 cut(s)	6, 96, 434, 822, 953, 968, 1398, 1695
MslI	CAYNNNNRTG	2 cut(s)	1445, 1857
Msp20I	TGGCCA	1 cut(s)	1374
MspA1I	CMGCKG	1 cut(s)	1191
MspCI	CTTAAG	1 cut(s)	967
MspI	CCGG	1 cut(s)	2064
MspR9I	CCNGG	1 cut(s)	1822
Mva1269I	GAATGC	1 cut(s)	1200
MvaI	CCWGG	1 cut(s)	1822
MvnI	CGCG	2 cut(s)	230, 611
MwoI	GCNNNNNNNGC	3 cut(s)	1255, 1868, 2195
NcoI	CCATGG	1 cut(s)	448
NdeI	CATATG	1 cut(s)	203
NdeII	GATC	8 cut(s)	681, 745, 944, 1530, 1833, 2002, 2132, 2209
NlaIV	GGNNCC	1 cut(s)	2146
NmeAIII	GCCGAG	1 cut(s)	1201
NmuCI	GTSAC	4 cut(s)	887, 1090, 1495, 1688
NsbI	TGCGCA	1 cut(s)	208
NsiI	ATGCAT	3 cut(s)	562, 1111, 1271
NspI	RCATGY	4 cut(s)	1033, 1450, 1862, 2198
NspV	TTCGAA	1 cut(s)	1045
PaeI	GCATGC	2 cut(s)	1033, 2198
PagI	TCATGA	1 cut(s)	1830
PceI	AGGCCT	1 cut(s)	1076
PciI	ACATGT	1 cut(s)	1446
PciSI	GCTCTTC	4 cut(s)	494, 520, 1190, 1941
PctI	GAATGC	1 cut(s)	1200
PdmI	GAANNNNTTC	2 cut(s)	1184, 1489
PfeI	GAWTC	7 cut(s)	110, 130, 869, 1313, 1865, 1898, 2155
PflMI	CCANNNNNTGG	1 cut(s)	1891
PfoI	TCCNGGA	1 cut(s)	1820
PkrI	GCNGC	2 cut(s)	335, 1200
PleI	GAGTC	3 cut(s)	1122, 1162, 1222
PpsI	GAGTC	3 cut(s)	1122, 1162, 1222
PscI	ACATGT	1 cut(s)	1446
PsiI	TTATAA	3 cut(s)	617, 1394, 1514
Psp1406I	AACGTT	1 cut(s)	716
Psp6I	CCWGG	1 cut(s)	1820
PspFI	CCCAGC	1 cut(s)	1249
PspGI	CCWGG	1 cut(s)	1820
PspN4I	GGNNCC	1 cut(s)	2146
PspPI	GGNCC	2 cut(s)	606, 2061
PstNI	CAGNNNCTG	1 cut(s)	1868
PsuI	RGATCY	3 cut(s)	745, 944, 2002
RsaI	GTAC	3 cut(s)	1148, 1261, 1541
RsaNI	GTAC	3 cut(s)	1147, 1260, 1540
RseI	CAYNNNNRTG	2 cut(s)	1445, 1857
SapI	GCTCTTC	4 cut(s)	494, 520, 1190, 1941
SaqAI	TTAA	8 cut(s)	6, 96, 434, 822, 953, 968, 1398, 1695
SatI	GCNGC	2 cut(s)	334, 1199
Sau3AI	GATC	8 cut(s)	681, 745, 944, 1530, 1833, 2002, 2132, 2209
Sau96I	GGNCC	2 cut(s)	606, 2061
SchI	GAGTC	3 cut(s)	1123, 1162, 1223
ScrFI	CCNGG	1 cut(s)	1822
SduI	GDGCHC	1 cut(s)	489
SfuI	TTCGAA	1 cut(s)	1045
SinI	GGWCC	2 cut(s)	606, 2061
SmiMI	CAYNNNNRTG	2 cut(s)	1445, 1857
SmlI	CTYRAG	2 cut(s)	967, 1769
SmoI	CTYRAG	2 cut(s)	967, 1769
SphI	GCATGC	2 cut(s)	1033, 2198
SseBI	AGGCCT	1 cut(s)	1076
SsiI	CCGC	7 cut(s)	81, 333, 370, 506, 609, 855, 1191
SspMI	CTAG	2 cut(s)	942, 1082
StuI	AGGCCT	1 cut(s)	1076
StyD4I	CCNGG	1 cut(s)	1820
StyI	CCWWGG	3 cut(s)	282, 448, 1081
TaaI	ACNGT	4 cut(s)	586, 1140, 1278, 1633
TaiI	ACGT	4 cut(s)	96, 719, 923, 1708
TaqI	TCGA	5 cut(s)	108, 547, 1045, 1112, 1563
TatI	WGTACW	1 cut(s)	1146
TauI	GCSGC	1 cut(s)	336
TfiI	GAWTC	7 cut(s)	110, 130, 869, 1313, 1865, 1898, 2155
Tru1I	TTAA	8 cut(s)	6, 96, 434, 822, 953, 968, 1398, 1695
Tru9I	TTAA	8 cut(s)	6, 96, 434, 822, 953, 968, 1398, 1695
TscAI	CASTG	1 cut(s)	1638
TseFI	GTSAC	4 cut(s)	887, 1090, 1495, 1688
TseI	GCWGC	1 cut(s)	1198
Tsp45I	GTSAC	4 cut(s)	887, 1090, 1495, 1688
TspRI	CASTG	1 cut(s)	1638
Van91I	CCANNNNNTGG	1 cut(s)	1891
Vha464I	CTTAAG	1 cut(s)	967
VpaK11BI	GGWCC	2 cut(s)	606, 2061
XapI	RAATTY	4 cut(s)	706, 1048, 1485, 2020
XceI	RCATGY	4 cut(s)	1033, 1450, 1862, 2198
XcmI	CCANNNNNNNNNTGG	1 cut(s)	326
XmaJI	CCTAGG	1 cut(s)	1081
XmnI	GAANNNNTTC	2 cut(s)	1184, 1489
XspI	CTAG	2 cut(s)	942, 1082
ZraI	GACGTC	1 cut(s)	921
Zsp2I	ATGCAT	3 cut(s)	562, 1111, 1271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.