Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012198

Physical Location & Seq

Genomic Coordinates Reverse (-)

24122576 .. 24124124

Gene Structure 1549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g28320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGACCCAAGAAACCGTTCGAGATCCCATGTTCATGCTCAGACGTAAACCCCTCTACTTGTTCGGACGCCTTCCCTCCTCTCTTCCATTTTGTTCTTTCTCTTCTTCTAACTACCTTAACCGCCATCTCGATTCTTTTTTCTCTGACCAACTTCCAACTTTGCAGCATCTCTCTCGGTCCCACGCTCTCATTGTATCGTCTGGAAACTCAAACATCTTCATTGCCGCAAAGCTCATCTCTCTCTATGCGTCTCTCTCCAAACCCACGTTCTCCACCAAATTATTTGCTTCAGTTTCTCCCAAAGATACCTTTCCTTGGAACTCCATAATCAAAACCCATTTCTTAAATGCCAATTACTCGAAGGCCCTCGATTTCTTTTTCCAAATGCGGGGTTTGGGTTTATCTCCTAACCAATTTACTCTTCCGATGGTGGTTGCCTCGTGCGCCGAGTTGATGTTGCTTGAACATGGTAACAGTTGTGGTCGAATGGAGGATGCATCTCTTATGTTTGATGAAATTACTGTGAGAGATGTGGTTTGTTGGACCGCGCTTATAATTGGGTATGTGCAGAATGATGAGAGCGAGAAGGGTTTGGAGTATCTTTGTGAGATGCATAGGGTTGGTGGCATTGGTGAGAGGCCAACTTTCAGAACGTTGGAAGTTGGGCTTCAAGCTTGTGGGGACCTGGGTGCTTTAGTAGAAGGTAGATGCTTGCATGGTTTTGTAGTGAAAAGTGGGACTGGGTGTTCTCGAGATGTTAAATCTTTGCTTTTGTCCATGTATTCCAGATGCGGGACACCTGAAGAATCTTATCTTTCGTTTTGTGATGTAGAAAATAAAGATGTTATATCTTGGATTATTGGTGTTTATGCTAGATCTGGGTTAATGACTGAATTAAGTTTGTTTTGGGAAATGCAGGATAGTGATATATATCCAGATGAAATTGTTGTCAGTTGCGTGCTTTCTGGGTTTAGAAATTCATCCAATGTCAATGAAGGTAAGGCGTTCGTAGGATTAGTCATGAGGCAAAATTATGCATTGAGTCAGAATATTCATAGTAAACTACTGTCCCTGTACTGCAAGTTTGAGTTGTTGACTCTTTCAGAGAAGCTCTTTAGCAGAATGCAGCACCAGAACAAAGAGTCTTGTAACACTATGCTTTATGGCTATGGTAAGATGGGACTGCATAAATGCATAGAACTGTTTAGGAAGATGAAATATCAAAGCATTGGAGCTGATTCTAATGGCTTGCTATCTGTGATTTGTTCGTGTTTTCAGACGGGAGCAATCCATCTTGGCCGATCACTTCATTGCTTTATAATTAAGGCTTCTATGGATGAAAATGTTTCAGTAGCCAACACACTCATAGACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

459

Amino Acids

51.33

Weight (kDa)

6.85

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39952
malus_domestica	MD01G1032300.v1.1 MD15G1322800.v1.1
prunus_persica	Prupe.6G189500_v2.0.a1
pyrus_communis	pycom01g05950 pycom15g28320
rosa_chinensis	RchiOBHm_Chr2g0113061
rosa_laevigata	RLG00000018033
rosa_multiflora	Rmu_sc0005949.1_g000001 Rmu_sc0016776.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130910
rosa_rugosa	Rorug02G0183500 Rorug02G0183600 Rorug02G0183700
rosa_samantha	Rh2AG238700 Rh2BG252500 Rh2CG242700 Rh2DG246700
rosa_wichuraiana	Rw2G018720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	554, 1319
AccII	CGCG	1 cut(s)	548
AciI	CCGC	5 cut(s)	121, 225, 388, 546, 792
AclI	AACGTT	1 cut(s)	653
AclWI	GGATC	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	1297
AcsI	RAATTY	1 cut(s)	976
AcuI	CTGAAG	2 cut(s)	273, 822
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	1 cut(s)	1076
AfiI	CCNNNNNNNGG	3 cut(s)	315, 388, 792
AflIII	ACRYGT	1 cut(s)	1371
AgsI	TTSAA	2 cut(s)	464, 671
AjnI	CCWGG	1 cut(s)	684
AjuI	GAANNNNNNNTTGG	5 cut(s)	32, 251, 283, 405, 437
AloI	GAACNNNNNNTCC	2 cut(s)	730, 762
AluBI	AGCT	4 cut(s)	232, 674, 1111, 1235
AluI	AGCT	4 cut(s)	232, 674, 1111, 1235
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	17
Ama87I	CYCGRG	1 cut(s)	750
AoxI	GGCC	3 cut(s)	363, 638, 1297
ApeKI	GCWGC	2 cut(s)	163, 1126
ApoI	RAATTY	1 cut(s)	976
Asp700I	GAANNNNTTC	1 cut(s)	15
AspLEI	GCGC	2 cut(s)	446, 550
AspS9I	GGNCC	4 cut(s)	177, 364, 543, 682
AsuHPI	GGTGA	1 cut(s)	644
AvaI	CYCGRG	1 cut(s)	750
AvaII	GGWCC	3 cut(s)	177, 543, 682
BauI	CACGAG	1 cut(s)	439
BbvI	GCAGC	2 cut(s)	175, 1138
BccI	CCATC	4 cut(s)	132, 421, 1171, 1299
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BciT130I	CCWGG	1 cut(s)	686
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	1 cut(s)	873
BglII	AGATCT	1 cut(s)	875
BisI	GCNGC	3 cut(s)	164, 225, 1127
BlsI	GCNGC	3 cut(s)	165, 226, 1128
Bme1390I	CCNGG	1 cut(s)	686
Bme18I	GGWCC	3 cut(s)	177, 543, 682
BmeT110I	CYCGRG	1 cut(s)	750
BmgT120I	GGNCC	4 cut(s)	177, 364, 543, 682
BmiI	GGNNCC	2 cut(s)	179, 683
BmrFI	CCNGG	1 cut(s)	686
BmrI	ACTGGG	1 cut(s)	750
BmsI	GCATC	6 cut(s)	175, 484, 506, 600, 698, 779
BmuI	ACTGGG	1 cut(s)	750
BsaBI	GATNNNNATC	1 cut(s)	930
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	314, 685
Bsc4I	CCNNNNNNNGG	3 cut(s)	315, 388, 792
Bse1I	ACTGG	1 cut(s)	745
Bse3DI	GCAATG	2 cut(s)	219, 1309
Bse8I	GATNNNNATC	1 cut(s)	930
BseBI	CCWGG	1 cut(s)	686
BseDI	CCNNGG	2 cut(s)	314, 685
BseGI	GGATG	3 cut(s)	499, 980, 1342
BseJI	GATNNNNATC	1 cut(s)	930
BseLI	CCNNNNNNNGG	3 cut(s)	315, 388, 792
BseMI	GCAATG	2 cut(s)	219, 1309
BseMII	CTCAG	1 cut(s)	52
BseNI	ACTGG	1 cut(s)	745
BseRI	GAGGAG	1 cut(s)	67
BseXI	GCAGC	2 cut(s)	175, 1138
BsgI	GTGCAG	1 cut(s)	587
Bsh1236I	CGCG	1 cut(s)	548
BshFI	GGCC	3 cut(s)	365, 640, 1299
BsiHKCI	CYCGRG	1 cut(s)	750
BslFI	GGGAC	6 cut(s)	163, 695, 751, 808, 1054, 1194
BslI	CCNNNNNNNGG	3 cut(s)	315, 388, 792
BsmAI	GTCTC	1 cut(s)	255
BsmBI	CGTCTC	1 cut(s)	255
BsmFI	GGGAC	6 cut(s)	163, 695, 751, 808, 1054, 1194
BsmI	GAATGC	1 cut(s)	1128
BsnI	GGCC	3 cut(s)	365, 640, 1299
BsoBI	CYCGRG	1 cut(s)	750
Bsp143I	GATC	3 cut(s)	22, 875, 1301
BspACI	CCGC	5 cut(s)	121, 225, 388, 546, 792
BspANI	GGCC	3 cut(s)	365, 640, 1299
BspCNI	CTCAG	1 cut(s)	51
BspFNI	CGCG	1 cut(s)	548
BspHI	TCATGA	1 cut(s)	1020
BspLI	GGNNCC	2 cut(s)	179, 683
BspPI	GGATC	1 cut(s)	17
BsrDI	GCAATG	2 cut(s)	219, 1309
BsrI	ACTGG	1 cut(s)	745
BssECI	CCNNGG	2 cut(s)	314, 685
BssMI	GATC	3 cut(s)	22, 875, 1301
BssNI	GRCGYC	1 cut(s)	67
BssSI	CACGAG	1 cut(s)	439
BssT1I	CCWWGG	1 cut(s)	314
Bst2BI	CACGAG	1 cut(s)	439
Bst2UI	CCWGG	1 cut(s)	686
Bst4CI	ACNGT	5 cut(s)	16, 476, 523, 1068, 1203
Bst6I	CTCTTC	3 cut(s)	87, 106, 426
BstACI	GRCGYC	1 cut(s)	67
BstC8I	GCNNGC	3 cut(s)	713, 959, 1250
BstDEI	CTNAG	1 cut(s)	38
BstF5I	GGATG	3 cut(s)	499, 980, 1342
BstFNI	CGCG	1 cut(s)	548
BstHHI	GCGC	2 cut(s)	446, 550
BstKTI	GATC	3 cut(s)	25, 878, 1304
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	3 cut(s)	22, 875, 1301
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstNI	CCWGG	1 cut(s)	686
BstNSI	RCATGY	1 cut(s)	1375
BstSCI	CCNGG	1 cut(s)	684
BstUI	CGCG	1 cut(s)	548
BstV1I	GCAGC	2 cut(s)	175, 1138
BstX2I	RGATCY	2 cut(s)	22, 875
BstYI	RGATCY	2 cut(s)	22, 875
BsuRI	GGCC	3 cut(s)	365, 640, 1299
BtsCI	GGATG	3 cut(s)	499, 980, 1342
Cac8I	GCNNGC	3 cut(s)	713, 959, 1250
CciI	TCATGA	1 cut(s)	1020
CfoI	GCGC	2 cut(s)	446, 550
Cfr13I	GGNCC	4 cut(s)	177, 364, 543, 682
CseI	GACGC	2 cut(s)	75, 237
Csp6I	GTAC	1 cut(s)	1075
CviAII	CATG	7 cut(s)	28, 34, 467, 716, 778, 1021, 1372
CviQI	GTAC	1 cut(s)	1075
DdeI	CTNAG	1 cut(s)	38
DpnI	GATC	3 cut(s)	24, 877, 1303
DpnII	GATC	3 cut(s)	22, 875, 1301
EaeI	YGGCCR	1 cut(s)	1297
Eam1104I	CTCTTC	3 cut(s)	87, 106, 426
EarI	CTCTTC	3 cut(s)	87, 106, 426
Eco130I	CCWWGG	1 cut(s)	314
Eco47I	GGWCC	3 cut(s)	177, 543, 682
Eco57I	CTGAAG	2 cut(s)	273, 822
Eco88I	CYCGRG	1 cut(s)	750
EcoO109I	RGGNCCY	2 cut(s)	364, 682
EcoRII	CCWGG	1 cut(s)	684
EcoT14I	CCWWGG	1 cut(s)	314
EcoT22I	ATGCAT	4 cut(s)	499, 615, 1039, 1196
ErhI	CCWWGG	1 cut(s)	314
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	7 cut(s)	31, 37, 470, 719, 781, 1024, 1375
FalI	AAGNNNNNCTT	2 cut(s)	651, 683
FaqI	GGGAC	6 cut(s)	163, 695, 751, 808, 1054, 1194
FatI	CATG	7 cut(s)	27, 33, 466, 715, 777, 1020, 1371
FauI	CCCGC	2 cut(s)	381, 785
Fnu4HI	GCNGC	3 cut(s)	164, 225, 1127
FokI	GGATG	3 cut(s)	506, 967, 1349
Fsp4HI	GCNGC	3 cut(s)	164, 225, 1127
FspBI	CTAG	1 cut(s)	873
GlaI	GCGC	2 cut(s)	445, 549
GluI	GCNGC	3 cut(s)	164, 225, 1127
HaeIII	GGCC	3 cut(s)	365, 640, 1299
HgaI	GACGC	2 cut(s)	75, 237
HhaI	GCGC	2 cut(s)	446, 550
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	7 cut(s)	31, 37, 470, 719, 781, 1024, 1375
Hin6I	GCGC	2 cut(s)	444, 548
HinP1I	GCGC	2 cut(s)	444, 548
HincII	GTYRAC	1 cut(s)	1095
HindII	GTYRAC	1 cut(s)	1095
HindIII	AAGCTT	1 cut(s)	672
HinfI	GANTC	6 cut(s)	131, 806, 1042, 1096, 1142, 1238
HphI	GGTGA	1 cut(s)	644
Hpy166II	GTNNAC	3 cut(s)	47, 1061, 1095
Hpy188I	TCNGA	8 cut(s)	41, 65, 145, 426, 650, 1047, 1105, 1278
Hpy188III	TCNNGA	8 cut(s)	20, 128, 201, 750, 752, 786, 935, 1021
Hpy8I	GTNNAC	3 cut(s)	47, 1061, 1095
HpyAV	CCTTC	5 cut(s)	80, 355, 580, 695, 989
HpyCH4III	ACNGT	5 cut(s)	16, 476, 523, 1068, 1203
HpyCH4IV	ACGT	3 cut(s)	43, 266, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	1 cut(s)	38
HpySE526I	ACGT	3 cut(s)	43, 266, 653
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	7 cut(s)	31, 37, 470, 719, 781, 1024, 1375
HspAI	GCGC	2 cut(s)	444, 548
Kzo9I	GATC	3 cut(s)	22, 875, 1301
LmnI	GCTCC	2 cut(s)	1232, 1283
Lsp1109I	GCAGC	2 cut(s)	175, 1138
LweI	GCATC	6 cut(s)	175, 484, 506, 600, 698, 779
MaeI	CTAG	1 cut(s)	873
MaeII	ACGT	3 cut(s)	43, 266, 653
MaeIII	GTNAC	2 cut(s)	470, 1148
MalI	GATC	3 cut(s)	24, 877, 1303
MboI	GATC	3 cut(s)	22, 875, 1301
MboII	GAAGA	7 cut(s)	74, 93, 96, 208, 413, 815, 1222
MflI	RGATCY	2 cut(s)	22, 875
MlyI	GAGTC	3 cut(s)	1051, 1090, 1151
MmeI	TCCRAC	3 cut(s)	179, 521, 636
MnlI	CCTC	8 cut(s)	62, 85, 88, 377, 448, 484, 630, 1017
Mph1103I	ATGCAT	4 cut(s)	499, 615, 1039, 1196
MroXI	GAANNNNTTC	1 cut(s)	15
MseI	TTAA	6 cut(s)	117, 344, 759, 884, 896, 1323
MslI	CAYNNNNRTG	2 cut(s)	32, 1370
MspR9I	CCNGG	1 cut(s)	686
Mva1269I	GAATGC	1 cut(s)	1128
MvaI	CCWGG	1 cut(s)	686
MvnI	CGCG	1 cut(s)	548
MwoI	GCNNNNNNNGC	1 cut(s)	443
NdeII	GATC	3 cut(s)	22, 875, 1301
NlaIII	CATG	7 cut(s)	31, 37, 470, 719, 781, 1024, 1375
NlaIV	GGNNCC	2 cut(s)	179, 683
NmeAIII	GCCGAG	1 cut(s)	472
NsiI	ATGCAT	4 cut(s)	499, 615, 1039, 1196
NspI	RCATGY	1 cut(s)	1375
PaeR7I	CTCGAG	1 cut(s)	750
PagI	TCATGA	1 cut(s)	1020
PciI	ACATGT	1 cut(s)	1371
PctI	GAATGC	1 cut(s)	1128
PdmI	GAANNNNTTC	1 cut(s)	15
PfeI	GAWTC	3 cut(s)	131, 806, 1238
PkrI	GCNGC	3 cut(s)	165, 226, 1128
PleI	GAGTC	3 cut(s)	1050, 1090, 1150
PpsI	GAGTC	3 cut(s)	1050, 1090, 1150
PpuMI	RGGWCCY	1 cut(s)	682
PscI	ACATGT	1 cut(s)	1371
PsiI	TTATAA	2 cut(s)	554, 1319
Psp1406I	AACGTT	1 cut(s)	653
Psp5II	RGGWCCY	1 cut(s)	682
Psp6I	CCWGG	1 cut(s)	684
PspGI	CCWGG	1 cut(s)	684
PspN4I	GGNNCC	2 cut(s)	179, 683
PspPI	GGNCC	4 cut(s)	177, 364, 543, 682
PspPPI	RGGWCCY	1 cut(s)	682
PsuI	RGATCY	2 cut(s)	22, 875
RsaI	GTAC	1 cut(s)	1076
RsaNI	GTAC	1 cut(s)	1075
RseI	CAYNNNNRTG	2 cut(s)	32, 1370
SaqAI	TTAA	6 cut(s)	117, 344, 759, 884, 896, 1323
SatI	GCNGC	3 cut(s)	164, 225, 1127
Sau3AI	GATC	3 cut(s)	22, 875, 1301
Sau96I	GGNCC	4 cut(s)	177, 364, 543, 682
SchI	GAGTC	3 cut(s)	1051, 1090, 1151
ScrFI	CCNGG	1 cut(s)	686
SfaNI	GCATC	6 cut(s)	175, 484, 506, 600, 698, 779
Sfr274I	CTCGAG	1 cut(s)	750
SinI	GGWCC	3 cut(s)	177, 543, 682
SlaI	CTCGAG	1 cut(s)	750
SmiMI	CAYNNNNRTG	2 cut(s)	32, 1370
SmlI	CTYRAG	1 cut(s)	750
SmoI	CTYRAG	1 cut(s)	750
SsiI	CCGC	5 cut(s)	121, 225, 388, 546, 792
SspI	AATATT	1 cut(s)	1051
SspMI	CTAG	1 cut(s)	873
StyD4I	CCNGG	1 cut(s)	684
StyI	CCWWGG	1 cut(s)	314
TaaI	ACNGT	5 cut(s)	16, 476, 523, 1068, 1203
TaiI	ACGT	3 cut(s)	46, 269, 656
TaqI	TCGA	6 cut(s)	19, 129, 359, 369, 484, 751
TaqII	GACCGA	1 cut(s)	165
TatI	WGTACW	1 cut(s)	1074
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	3 cut(s)	131, 806, 1238
Tru1I	TTAA	6 cut(s)	117, 344, 759, 884, 896, 1323
Tru9I	TTAA	6 cut(s)	117, 344, 759, 884, 896, 1323
TseI	GCWGC	2 cut(s)	163, 1126
VpaK11BI	GGWCC	3 cut(s)	177, 543, 682
XapI	RAATTY	1 cut(s)	976
XceI	RCATGY	1 cut(s)	1375
XhoI	CTCGAG	1 cut(s)	750
XmnI	GAANNNNTTC	1 cut(s)	15
XspI	CTAG	1 cut(s)	873
Zsp2I	ATGCAT	4 cut(s)	499, 615, 1039, 1196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.