Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012198

Physical Location & Seq

Genomic Coordinates Forward (+)

17116545 .. 17117101

Gene Structure 557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0183700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGAGAAGACACATTTGCTTGTTTTCTCCAATAGTCTTGGTGATAATTCTGTTGCTCTCAAACTCCAATGATATTATGGTCGAGTGTCGAGCTCTTCGATCAGGAGTTAAGAGCAGGAGTACTGATCATGGTGCTGCAGAGAGGGGTACGATGATCATCGGAAAAGCTTCGGTTTCGAGGTCTGCCAAGAAGATGAGGGACAGGGTTTTCGTAAGGTATCAGATGTCTACTATGGCTTCTGGACCTAGCAGGAAGGGCTCTGGCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

89

Amino Acids

9.82

Weight (kDa)

11.41

Isoelectric Point (pI)

62.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39952
malus_domestica	MD01G1032300.v1.1 MD15G1322800.v1.1
prunus_persica	Prupe.6G189500_v2.0.a1
pyrus_communis	pycom01g05950 pycom15g28320
rosa_chinensis	RchiOBHm_Chr2g0113061
rosa_laevigata	RLG00000018033
rosa_multiflora	Rmu_sc0005949.1_g000001 Rmu_sc0016776.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130910
rosa_rugosa	Rorug02G0183500 Rorug02G0183600 Rorug02G0183700
rosa_samantha	Rh2AG238700 Rh2BG252500 Rh2CG242700 Rh2DG246700
rosa_wichuraiana	Rw2G018720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	227
AcoI	YGGCCR	1 cut(s)	262
AfaI	GTAC	2 cut(s)	121, 148
AluBI	AGCT	2 cut(s)	92, 167
AluI	AGCT	2 cut(s)	92, 167
Alw21I	GWGCWC	1 cut(s)	94
AoxI	GGCC	1 cut(s)	262
ApeKI	GCWGC	1 cut(s)	134
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
Asp700I	GAANNNNTTC	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	242
BalI	TGGCCA	1 cut(s)	264
BanII	GRGCYC	2 cut(s)	94, 260
BbsI	GAAGAC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	94
BbvI	GCAGC	1 cut(s)	121
BclI	TGATCA	2 cut(s)	124, 153
BfaI	CTAG	2 cut(s)	246, 268
BfmI	CTRYAG	1 cut(s)	135
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
BmcAI	AGTACT	1 cut(s)	121
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BpiI	GAAGAC	1 cut(s)	13
BsaBI	GATNNNNATC	1 cut(s)	155
Bse8I	GATNNNNATC	1 cut(s)	155
BseJI	GATNNNNATC	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	121
BshFI	GGCC	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	264
Bsp1286I	GDGCHC	2 cut(s)	94, 260
Bsp143I	GATC	3 cut(s)	98, 124, 153
BspANI	GGCC	1 cut(s)	264
BspMAI	CTGCAG	1 cut(s)	139
BspQI	GCTCTTC	1 cut(s)	99
BssMI	GATC	3 cut(s)	98, 124, 153
Bst6I	CTCTTC	1 cut(s)	99
BstKTI	GATC	3 cut(s)	101, 127, 156
BstMBI	GATC	3 cut(s)	98, 124, 153
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstSFI	CTRYAG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	121
BstV2I	GAAGAC	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	264
Cfr13I	GGNCC	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	120, 147
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	5 cut(s)	92, 167, 236, 258, 264
CviKI_1	RGCY	5 cut(s)	92, 167, 236, 258, 264
CviQI	GTAC	2 cut(s)	120, 147
DpnI	GATC	3 cut(s)	100, 126, 155
DpnII	GATC	3 cut(s)	98, 124, 153
EaeI	YGGCCR	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	92
Eco24I	GRGCYC	2 cut(s)	94, 260
Eco47I	GGWCC	1 cut(s)	242
Eco53kI	GAGCTC	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	92
EcoT38I	GRGCYC	2 cut(s)	94, 260
FaeI	CATG	1 cut(s)	131
FaiI	YATR	3 cut(s)	77, 129, 233
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	1 cut(s)	127
FbaI	TGATCA	2 cut(s)	124, 153
FblI	GTMKAC	1 cut(s)	227
Fnu4HI	GCNGC	1 cut(s)	135
FriOI	GRGCYC	2 cut(s)	94, 260
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	2 cut(s)	246, 268
GluI	GCNGC	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	264
Hin1II	CATG	1 cut(s)	131
HindIII	AAGCTT	1 cut(s)	165
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	2 cut(s)	161, 222
Hpy188III	TCNNGA	2 cut(s)	102, 240
Hpy8I	GTNNAC	1 cut(s)	228
HpyAV	CCTTC	1 cut(s)	247
HpyCH4V	TGCA	1 cut(s)	137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	131
Ksp22I	TGATCA	2 cut(s)	124, 153
Kzo9I	GATC	3 cut(s)	98, 124, 153
LguI	GCTCTTC	1 cut(s)	99
LpnPI	CCDG	6 cut(s)	87, 100, 187, 225, 235, 246
Lsp1109I	GCAGC	1 cut(s)	121
MaeI	CTAG	2 cut(s)	246, 268
MalI	GATC	3 cut(s)	100, 126, 155
MboI	GATC	3 cut(s)	98, 124, 153
MboII	GAAGA	3 cut(s)	18, 86, 202
MhlI	GDGCHC	2 cut(s)	94, 260
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	1 cut(s)	45
MluNI	TGGCCA	1 cut(s)	264
MnlI	CCTC	3 cut(s)	135, 171, 189
Mox20I	TGGCCA	1 cut(s)	264
MroXI	GAANNNNTTC	1 cut(s)	166
MscI	TGGCCA	1 cut(s)	264
MseI	TTAA	1 cut(s)	108
Msp20I	TGGCCA	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	255
NdeII	GATC	3 cut(s)	98, 124, 153
NlaIII	CATG	1 cut(s)	131
PciSI	GCTCTTC	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	166
PkrI	GCNGC	1 cut(s)	136
Psp124BI	GAGCTC	1 cut(s)	94
PspPI	GGNCC	1 cut(s)	242
PstI	CTGCAG	1 cut(s)	139
RsaI	GTAC	2 cut(s)	121, 148
RsaNI	GTAC	2 cut(s)	120, 147
SacI	GAGCTC	1 cut(s)	94
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	3 cut(s)	98, 124, 153
Sau96I	GGNCC	1 cut(s)	242
ScaI	AGTACT	1 cut(s)	121
SduI	GDGCHC	2 cut(s)	94, 260
SetI	ASST	5 cut(s)	94, 169, 182, 218, 247
SfcI	CTRYAG	1 cut(s)	135
SinI	GGWCC	1 cut(s)	242
Sse9I	AATT	1 cut(s)	45
SspMI	CTAG	2 cut(s)	246, 268
SstI	GAGCTC	1 cut(s)	94
TaqI	TCGA	4 cut(s)	81, 88, 97, 176
TasI	AATT	1 cut(s)	45
TatI	WGTACW	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseI	GCWGC	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	242
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	166
XspI	CTAG	2 cut(s)	246, 268
ZrmI	AGTACT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.