Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012198

Physical Location & Seq

Genomic Coordinates Reverse (-)

17094965 .. 17096753

Gene Structure 1789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0183500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTCACTCTCGCGCTCTGCTCTCTCCCCTCAAATCTCTTCTATCCTTTGCCTGGCCTCCTCCATCATCGATATCACCATGACCTTGGACACCACCATCGGCCTATTCGATGTCCTCCAACACGCCAAGTATCCCGATAACACTGTGTGCAACCTCATCACTACGCACCATCGCCGGGACGACCTCCACCACTTCGACTGTAACCTCGTGAAGGGCAATATCTCATACTCGATCGATTCCAGCCTCTCAGCTATGCGCGAATCCAGCTGCCTAATCTATGCTATTGGCGCTTTCACTATTGTTGAAATGCTATTTAGCTCTAGTCTTCTTGCCATTGTTGGAGCTGGTGAAGAGGCCACAGCCATCTTTATCTCCGCGTCGTCTCTGTTTGTTCAATACAACAAGTGGAACTGCTCTTCGAGAATTGAACTTTTTGACTTCAATATTTCCGTTCGTATGAATAGGAAAAGCTTTAAAGTCCCAAAGCTGTGCAGTACTTCTATTAGATTAAGGCTTCACATACTTTGGCTTGGTTTTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

180

Amino Acids

20.03

Weight (kDa)

7.66

Isoelectric Point (pI)

54.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39952
malus_domestica	MD01G1032300.v1.1 MD15G1322800.v1.1
prunus_persica	Prupe.6G189500_v2.0.a1
pyrus_communis	pycom01g05950 pycom15g28320
rosa_chinensis	RchiOBHm_Chr2g0113061
rosa_laevigata	RLG00000018033
rosa_multiflora	Rmu_sc0005949.1_g000001 Rmu_sc0016776.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130910
rosa_rugosa	Rorug02G0183500 Rorug02G0183600 Rorug02G0183700
rosa_samantha	Rh2AG238700 Rh2BG252500 Rh2CG242700 Rh2DG246700
rosa_wichuraiana	Rw2G018720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	13, 258, 377
AciI	CCGC	1 cut(s)	375
AdeI	CACNNNGTG	1 cut(s)	147
AfaI	GTAC	1 cut(s)	496
AfiI	CCNNNNNNNGG	3 cut(s)	52, 175, 211
AgsI	TTSAA	4 cut(s)	305, 395, 428, 442
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	6 cut(s)	251, 267, 318, 344, 471, 487
AluI	AGCT	6 cut(s)	251, 267, 318, 344, 471, 487
Alw26I	GTCTC	1 cut(s)	387
AoxI	GGCC	3 cut(s)	54, 100, 354
ApeKI	GCWGC	1 cut(s)	267
AspLEI	GCGC	3 cut(s)	15, 258, 290
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	2 cut(s)	67, 359
BauI	CACGAG	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	254
BccI	CCATC	4 cut(s)	71, 104, 177, 371
BciT130I	CCWGG	1 cut(s)	53
BciVI	GTATCC	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	387
BfaI	CTAG	1 cut(s)	321
BfoI	RGCGCY	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	141
BisI	GCNGC	1 cut(s)	268
BlsI	GCNGC	1 cut(s)	269
BmcAI	AGTACT	1 cut(s)	496
Bme1390I	CCNGG	2 cut(s)	53, 176
BmrFI	CCNGG	2 cut(s)	53, 176
BpiI	GAAGAC	1 cut(s)	317
BpuMI	CCSGG	1 cut(s)	176
Bsa29I	ATCGAT	2 cut(s)	69, 234
BsaJI	CCNNGG	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 175, 211
BseBI	CCWGG	1 cut(s)	53
BseCI	ATCGAT	2 cut(s)	69, 234
BseDI	CCNNGG	1 cut(s)	84
BseLI	CCNNNNNNNGG	3 cut(s)	52, 175, 211
BseMII	CTCAG	1 cut(s)	261
BseRI	GAGGAG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	254
BsgI	GTGCAG	1 cut(s)	511
Bsh1236I	CGCG	3 cut(s)	13, 258, 377
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	3 cut(s)	56, 102, 356
BshVI	ATCGAT	2 cut(s)	69, 234
BsiEI	CGRYCG	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	175
BslFI	GGGAC	2 cut(s)	191, 464
BslI	CCNNNNNNNGG	3 cut(s)	52, 175, 211
BsmAI	GTCTC	1 cut(s)	387
BsmBI	CGTCTC	1 cut(s)	387
BsmFI	GGGAC	2 cut(s)	191, 464
BsnI	GGCC	3 cut(s)	56, 102, 356
Bsp143I	GATC	1 cut(s)	231
BspACI	CCGC	1 cut(s)	375
BspANI	GGCC	3 cut(s)	56, 102, 356
BspCNI	CTCAG	1 cut(s)	260
BspDI	ATCGAT	2 cut(s)	69, 234
BspFNI	CGCG	3 cut(s)	13, 258, 377
BspQI	GCTCTTC	1 cut(s)	421
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	1 cut(s)	231
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	84
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	145, 200
Bst6I	CTCTTC	3 cut(s)	43, 345, 421
BstDEI	CTNAG	1 cut(s)	247
BstENI	CCTNNNNNAGG	1 cut(s)	209
BstFNI	CGCG	3 cut(s)	13, 258, 377
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	3 cut(s)	15, 258, 290
BstKTI	GATC	1 cut(s)	234
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	1 cut(s)	231
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	2 cut(s)	264, 287
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	51, 174
BstUI	CGCG	3 cut(s)	13, 258, 377
BstV1I	GCAGC	1 cut(s)	254
BstV2I	GAAGAC	1 cut(s)	317
BstXI	CCANNNNNNTGG	1 cut(s)	85
Bsu15I	ATCGAT	2 cut(s)	69, 234
BsuI	GTATCC	1 cut(s)	141
BsuRI	GGCC	3 cut(s)	56, 102, 356
BsuTUI	ATCGAT	2 cut(s)	69, 234
BtgZI	GCGATG	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	141
CfoI	GCGC	3 cut(s)	15, 258, 290
ClaI	ATCGAT	2 cut(s)	69, 234
CseI	GACGC	1 cut(s)	366
Csp6I	GTAC	1 cut(s)	495
CviAII	CATG	1 cut(s)	79
CviQI	GTAC	1 cut(s)	495
DdeI	CTNAG	1 cut(s)	247
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
DraI	TTTAAA	1 cut(s)	475
DraIII	CACNNNGTG	1 cut(s)	147
Eam1104I	CTCTTC	3 cut(s)	43, 345, 421
EarI	CTCTTC	3 cut(s)	43, 345, 421
Eco130I	CCWWGG	1 cut(s)	84
Eco32I	GATATC	1 cut(s)	73
EcoNI	CCTNNNNNAGG	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	51
EcoRV	GATATC	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
Esp3I	CGTCTC	1 cut(s)	387
FaeI	CATG	1 cut(s)	82
FaiI	YATR	6 cut(s)	80, 226, 254, 279, 458, 521
FaqI	GGGAC	2 cut(s)	191, 464
FatI	CATG	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	268
Fsp4HI	GCNGC	1 cut(s)	268
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	3 cut(s)	14, 257, 289
GluI	GCNGC	1 cut(s)	268
HaeII	RGCGCY	1 cut(s)	291
HaeIII	GGCC	3 cut(s)	56, 102, 356
HapII	CCGG	1 cut(s)	175
HgaI	GACGC	1 cut(s)	366
HhaI	GCGC	3 cut(s)	15, 258, 290
Hin1II	CATG	1 cut(s)	82
Hin6I	GCGC	3 cut(s)	13, 256, 288
HinP1I	GCGC	3 cut(s)	13, 256, 288
HindIII	AAGCTT	1 cut(s)	469
HinfI	GANTC	2 cut(s)	236, 260
HpaII	CCGG	1 cut(s)	175
HphI	GGTGA	2 cut(s)	67, 359
Hpy188III	TCNNGA	3 cut(s)	134, 208, 420
Hpy99I	CGWCG	1 cut(s)	382
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	2 cut(s)	145, 200
HpyCH4V	TGCA	2 cut(s)	150, 492
HpyF10VI	GCNNNNNNNGC	2 cut(s)	264, 287
HpyF3I	CTNAG	1 cut(s)	247
Hsp92II	CATG	1 cut(s)	82
HspAI	GCGC	3 cut(s)	13, 256, 288
Kzo9I	GATC	1 cut(s)	231
LguI	GCTCTTC	1 cut(s)	421
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	6 cut(s)	38, 65, 188, 253, 277, 330
Lsp1109I	GCAGC	1 cut(s)	254
MaeI	CTAG	1 cut(s)	321
MaeIII	GTNAC	2 cut(s)	3, 200
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MboII	GAAGA	4 cut(s)	30, 317, 362, 408
MluCI	AATT	1 cut(s)	423
MmeI	TCCRAC	2 cut(s)	142, 319
MnlI	CCTC	9 cut(s)	39, 67, 70, 125, 164, 194, 215, 254, 346
MseI	TTAA	2 cut(s)	474, 509
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	2 cut(s)	53, 176
MvaI	CCWGG	1 cut(s)	53
MvnI	CGCG	3 cut(s)	13, 258, 377
MwoI	GCNNNNNNNGC	2 cut(s)	264, 287
NciI	CCSGG	1 cut(s)	176
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	3
PciSI	GCTCTTC	1 cut(s)	421
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	236, 260
PkrI	GCNGC	1 cut(s)	269
Ple19I	CGATCG	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PvuI	CGATCG	1 cut(s)	234
PvuII	CAGCTG	1 cut(s)	267
RsaI	GTAC	1 cut(s)	496
RsaNI	GTAC	1 cut(s)	495
SapI	GCTCTTC	1 cut(s)	421
SaqAI	TTAA	2 cut(s)	474, 509
SatI	GCNGC	1 cut(s)	268
Sau3AI	GATC	1 cut(s)	231
ScaI	AGTACT	1 cut(s)	496
ScrFI	CCNGG	2 cut(s)	53, 176
Sse9I	AATT	1 cut(s)	423
SsiI	CCGC	1 cut(s)	375
SspI	AATATT	1 cut(s)	445
SspMI	CTAG	1 cut(s)	321
StyD4I	CCNGG	2 cut(s)	51, 174
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	2 cut(s)	145, 200
TaqI	TCGA	6 cut(s)	69, 108, 195, 230, 234, 419
TasI	AATT	1 cut(s)	423
TatI	WGTACW	1 cut(s)	494
TfiI	GAWTC	2 cut(s)	236, 260
Tru1I	TTAA	2 cut(s)	474, 509
Tru9I	TTAA	2 cut(s)	474, 509
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	267
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	473
TspGWI	ACGGA	1 cut(s)	439
TspRI	CASTG	1 cut(s)	148
XagI	CCTNNNNNAGG	1 cut(s)	209
XspI	CTAG	1 cut(s)	321
ZrmI	AGTACT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.