AT5G01300

Phosphatidylethanolamine-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015482
Physical Location & Seq
Reverse (-)
121483 .. 122525
1043 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G01300.1

Sequence Viewer

Length: 489 bp
ATGTCGAGTGAGGAGTTGAGGCTGGTTTCGCCGACGATAGACAACGATGGGAAGTTGCCGAGAAAGTATACGATGGCAGGTCAAGGTGTTAAGAAAGACATCTCTCCTCCTCTTGAATGGTACAACGTTCCAGAAGGTACAAAAACGCTAGCTTTGGTGGTGGAAGACATCGATGCGCCTGATCCTAGTGGCCCGCTGGTGCCATGGACGGTGTGGGTTGTCGTCGACATACCACCAGAGATGAAAGGCCTACCGGAAGGATATTCCGGCAATGAGGATCAGACTACCGGTATTCGGGAAGGGAACAACGATCACAAGATTCCGGGATGGCGTGGACCTCTCTTACCTAGTCACGGTCACCGTTTTCAGTTCAAGCTTTTTGCTCTCGATGATAAACCCAAGATTGGTCACACGGTGACGAAAGAGAGATTGCTGATCGCAATTGAAGGGCACGTGCTAGGAGAAGCCATCTTGACGTGTTTGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBP

Protein Analysis

162

Amino Acids

17.82

Weight (kDa)

5.33

Isoelectric Point (pI)

32.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 18 - 159 1.4e-32 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01300 AT5G01300 AT5G01300
fragaria_vesca FvH4_6g11060
malus_domestica MD04G1161900.v1.1
prunus_persica Prupe.6G281700_v2.0.a1
pyrus_communis pycom04g14490
rosa_chinensis RchiOBHm_Chr3g0462371
rosa_laevigata RLG00000024862
rosa_multiflora Rmu_sc0002134.1_g000001
rosa_roxburghii Rroxscaffold_6G00417540
rosa_rugosa Rorug03G0056400
rosa_samantha Rh3BG118100 Rh3CG120900 Rh3DG120100
rosa_wichuraiana Rw3G009720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 68
AccB1I GGYRCC 1 cut(s) 199
AccI GTMKAC 2 cut(s) 68, 225
AciI CCGC 1 cut(s) 194
AclI AACGTT 1 cut(s) 126
AclWI GGATC 2 cut(s) 176, 285
AcvI CACGTG 1 cut(s) 454
AdeI CACNNNGTG 1 cut(s) 415
AfaI GTAC 2 cut(s) 122, 139
AfiI CCNNNNNNNGG 3 cut(s) 294, 353, 404
AflIII ACRYGT 1 cut(s) 476
AgeI ACCGGT 1 cut(s) 287
AgsI TTSAA 3 cut(s) 116, 373, 446
AjiI CACGTC 1 cut(s) 477
AluBI AGCT 2 cut(s) 152, 376
AluI AGCT 2 cut(s) 152, 376
AlwI GGATC 2 cut(s) 176, 285
AoxI GGCC 3 cut(s) 190, 247, 483
AsiGI ACCGGT 1 cut(s) 287
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 2 cut(s) 191, 335
AsuC2I CCSGG 1 cut(s) 324
AsuHPI GGTGA 2 cut(s) 350, 427
AsuNHI GCTAGC 1 cut(s) 148
AvaII GGWCC 1 cut(s) 335
BaeGI GKGCMC 1 cut(s) 453
BanI GGYRCC 1 cut(s) 199
BbrPI CACGTG 1 cut(s) 454
BbsI GAAGAC 1 cut(s) 171
BccI CCATC 4 cut(s) 41, 67, 321, 476
BcnI CCSGG 1 cut(s) 324
BfaI CTAG 4 cut(s) 149, 186, 348, 458
BfuAI ACCTGC 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 324
Bme18I GGWCC 1 cut(s) 335
BmgBI CACGTC 1 cut(s) 477
BmgT120I GGNCC 2 cut(s) 191, 335
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 1 cut(s) 324
BmsI GCATC 1 cut(s) 163
BmtI GCTAGC 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 171
BpuMI CCSGG 1 cut(s) 324
Bsa29I ATCGAT 1 cut(s) 171
BsaAI YACGTR 1 cut(s) 454
BsaJI CCNNGG 1 cut(s) 203
BsaWI WCCGGW 2 cut(s) 253, 287
Bsc4I CCNNNNNNNGG 3 cut(s) 294, 353, 404
Bse118I RCCGGY 1 cut(s) 287
Bse3DI GCAATG 1 cut(s) 277
BseCI ATCGAT 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 203
BseGI GGATG 1 cut(s) 332
BseLI CCNNNNNNNGG 3 cut(s) 294, 353, 404
BseMI GCAATG 1 cut(s) 277
BseRI GAGGAG 3 cut(s) 26, 96, 99
BseSI GKGCMC 1 cut(s) 453
BshFI GGCC 3 cut(s) 192, 249, 485
BshNI GGYRCC 1 cut(s) 199
BshTI ACCGGT 1 cut(s) 287
BshVI ATCGAT 1 cut(s) 171
BsiSI CCGG 4 cut(s) 254, 267, 288, 323
BslI CCNNNNNNNGG 3 cut(s) 294, 353, 404
BsnI GGCC 3 cut(s) 192, 249, 485
Bsp1286I GDGCHC 1 cut(s) 453
Bsp143I GATC 4 cut(s) 181, 277, 310, 435
Bsp19I CCATGG 1 cut(s) 203
BspACI CCGC 1 cut(s) 194
BspANI GGCC 3 cut(s) 192, 249, 485
BspDI ATCGAT 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 201
BspMI ACCTGC 1 cut(s) 68
BspOI GCTAGC 1 cut(s) 152
BspPI GGATC 2 cut(s) 176, 285
BspT107I GGYRCC 1 cut(s) 199
BsrDI GCAATG 1 cut(s) 277
BsrFI RCCGGY 1 cut(s) 287
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 4 cut(s) 181, 277, 310, 435
BssNAI GTATAC 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 203
Bst1107I GTATAC 1 cut(s) 69
Bst4CI ACNGT 4 cut(s) 211, 356, 362, 415
BstBAI YACGTR 1 cut(s) 454
BstC8I GCNNGC 2 cut(s) 150, 194
BstDSI CCRYGG 1 cut(s) 203
BstEII GGTNACC 1 cut(s) 356
BstF5I GGATG 1 cut(s) 332
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 4 cut(s) 184, 280, 313, 438
BstMBI GATC 4 cut(s) 181, 277, 310, 435
BstMWI GCNNNNNNNGC 1 cut(s) 28
BstPI GGTNACC 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 322
BstSLI GKGCMC 1 cut(s) 453
BstV2I GAAGAC 1 cut(s) 171
BstZ17I GTATAC 1 cut(s) 69
Bsu15I ATCGAT 1 cut(s) 171
BsuRI GGCC 3 cut(s) 192, 249, 485
BsuTUI ATCGAT 1 cut(s) 171
BtgI CCRYGG 1 cut(s) 203
BtrI CACGTC 1 cut(s) 477
BtsCI GGATG 1 cut(s) 332
BveI ACCTGC 1 cut(s) 68
Cac8I GCNNGC 2 cut(s) 150, 194
CfoI GCGC 1 cut(s) 178
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 2 cut(s) 191, 335
ClaI ATCGAT 1 cut(s) 171
Csp6I GTAC 2 cut(s) 121, 138
CspAI ACCGGT 1 cut(s) 287
CviAII CATG 1 cut(s) 204
CviJI RGCY 7 cut(s) 22, 152, 192, 249, 376, 467, 485
CviKI_1 RGCY 7 cut(s) 22, 152, 192, 249, 376, 467, 485
CviQI GTAC 2 cut(s) 121, 138
DpnI GATC 4 cut(s) 183, 279, 312, 437
DpnII GATC 4 cut(s) 181, 277, 310, 435
DraIII CACNNNGTG 1 cut(s) 415
Eco130I CCWWGG 1 cut(s) 203
Eco147I AGGCCT 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 335
Eco72I CACGTG 1 cut(s) 454
Eco91I GGTNACC 1 cut(s) 356
EcoO65I GGTNACC 1 cut(s) 356
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 1 cut(s) 207
FaiI YATR 3 cut(s) 69, 205, 230
FatI CATG 1 cut(s) 203
FauI CCCGC 1 cut(s) 201
FblI GTMKAC 2 cut(s) 68, 225
FokI GGATG 1 cut(s) 339
FspBI CTAG 4 cut(s) 149, 186, 348, 458
GlaI GCGC 1 cut(s) 177
HaeIII GGCC 3 cut(s) 192, 249, 485
HapII CCGG 4 cut(s) 254, 267, 288, 323
HhaI GCGC 1 cut(s) 178
Hin1II CATG 1 cut(s) 207
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 1 cut(s) 319
HpaII CCGG 4 cut(s) 254, 267, 288, 323
HphI GGTGA 2 cut(s) 350, 427
Hpy166II GTNNAC 3 cut(s) 69, 226, 335
Hpy188I TCNGA 1 cut(s) 282
Hpy188III TCNNGA 5 cut(s) 113, 131, 296, 386, 472
Hpy8I GTNNAC 3 cut(s) 69, 226, 335
Hpy99I CGWCG 2 cut(s) 37, 227
HpyAV CCTTC 4 cut(s) 128, 251, 293, 440
HpyCH4III ACNGT 4 cut(s) 211, 356, 362, 415
HpyCH4IV ACGT 3 cut(s) 126, 453, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
HpySE526I ACGT 3 cut(s) 126, 453, 476
Hsp92II CATG 1 cut(s) 207
HspAI GCGC 1 cut(s) 176
Kzo9I GATC 4 cut(s) 181, 277, 310, 435
LweI GCATC 1 cut(s) 163
MaeI CTAG 4 cut(s) 149, 186, 348, 458
MaeII ACGT 3 cut(s) 126, 453, 476
MaeIII GTNAC 4 cut(s) 350, 356, 407, 415
MalI GATC 4 cut(s) 183, 279, 312, 437
MboI GATC 4 cut(s) 181, 277, 310, 435
MboII GAAGA 1 cut(s) 176
MfeI CAATTG 1 cut(s) 441
MhlI GDGCHC 1 cut(s) 453
MluCI AATT 1 cut(s) 441
MnlI CCTC 6 cut(s) 4, 12, 117, 120, 268, 348
MseI TTAA 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 196
MspI CCGG 4 cut(s) 254, 267, 288, 323
MspR9I CCNGG 1 cut(s) 324
MunI CAATTG 1 cut(s) 441
MwoI GCNNNNNNNGC 1 cut(s) 28
NciI CCSGG 1 cut(s) 324
NcoI CCATGG 1 cut(s) 203
NdeII GATC 4 cut(s) 181, 277, 310, 435
NheI GCTAGC 1 cut(s) 148
NlaIII CATG 1 cut(s) 207
NlaIV GGNNCC 1 cut(s) 201
NmeAIII GCCGAG 1 cut(s) 84
NmuCI GTSAC 4 cut(s) 350, 356, 407, 415
PceI AGGCCT 1 cut(s) 249
PfeI GAWTC 1 cut(s) 319
PfoI TCCNGGA 1 cut(s) 322
PinAI ACCGGT 1 cut(s) 287
PmaCI CACGTG 1 cut(s) 454
PmlI CACGTG 1 cut(s) 454
Ppu21I YACGTR 1 cut(s) 454
Psp1406I AACGTT 1 cut(s) 126
PspCI CACGTG 1 cut(s) 454
PspEI GGTNACC 1 cut(s) 356
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 2 cut(s) 191, 335
RsaI GTAC 2 cut(s) 122, 139
RsaNI GTAC 2 cut(s) 121, 138
SalI GTCGAC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 90
Sau3AI GATC 4 cut(s) 181, 277, 310, 435
Sau96I GGNCC 2 cut(s) 191, 335
ScrFI CCNGG 1 cut(s) 324
SduI GDGCHC 1 cut(s) 453
SfaNI GCATC 1 cut(s) 163
SinI GGWCC 1 cut(s) 335
Sse9I AATT 1 cut(s) 441
SseBI AGGCCT 1 cut(s) 249
SsiI CCGC 1 cut(s) 194
SspMI CTAG 4 cut(s) 149, 186, 348, 458
StuI AGGCCT 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 322
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 4 cut(s) 211, 356, 362, 415
TaiI ACGT 3 cut(s) 129, 456, 479
TaqI TCGA 4 cut(s) 5, 171, 225, 387
TasI AATT 1 cut(s) 441
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TseFI GTSAC 4 cut(s) 350, 356, 407, 415
Tsp45I GTSAC 4 cut(s) 350, 356, 407, 415
TspDTI ATGAA 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 210
XmiI GTMKAC 2 cut(s) 68, 225
XspI CTAG 4 cut(s) 149, 186, 348, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.