Rh3BG118100

UPF0098 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0015482
Physical Location & Seq
Reverse (-)
9733996 .. 9735305
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG118100.1

Sequence Viewer

Length: 453 bp
ATGGCGGCAAGCGACGAGTTCAGACTGGTCTTACCAGGAATAGACCACGAAGGAAAACTACTCAGAAAGTACACCGCAGAAGGTCAAGGAGCCAAGAAGAACATCTCTCCACCGGTAGAATGGTACAACTTACCACCGGGGACCAAGAGCCTGGCCCTTGTGGTGCAGGACACAGATACACCAGATCCGAAAGACCCAGTTGTGCCGTGGACCAATTGGGTGGTGGTGAACATTCCACCGGGTGTGAAGGGCCTGCCGGAAGGTTTTTCCGGGAAAGAAGAGGATCAGATGGGCGGACAGTATGGCGGGCTCAAAGAAGGTAACAATGACTTAAAGGTTCCGGGGTGGTGTGGGCCAAAGTTGCCCTCGCCGGGTCACCGCTTCGAGTTCAAGCTCTATGCTTTGGATGATAAGCTTCATCTTGGTCACAAGTTTGTGGTGGATTGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBP

Protein Analysis

150

Amino Acids

16.49

Weight (kDa)

6.07

Isoelectric Point (pI)

31.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 22 - 139 8.1e-26 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01300 AT5G01300 AT5G01300
fragaria_vesca FvH4_6g11060
malus_domestica MD04G1161900.v1.1
prunus_persica Prupe.6G281700_v2.0.a1
pyrus_communis pycom04g14490
rosa_chinensis RchiOBHm_Chr3g0462371
rosa_laevigata RLG00000024862
rosa_multiflora Rmu_sc0002134.1_g000001
rosa_roxburghii Rroxscaffold_6G00417540
rosa_rugosa Rorug03G0056400
rosa_samantha Rh3BG118100 Rh3CG120900 Rh3DG120100
rosa_wichuraiana Rw3G009720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 438
Acc36I ACCTGC 1 cut(s) 438
AciI CCGC 5 cut(s) 5, 75, 294, 306, 379
AclWI GGATC 2 cut(s) 179, 291
AdeI CACNNNGTG 1 cut(s) 242
AfaI GTAC 2 cut(s) 71, 125
AfiI CCNNNNNNNGG 1 cut(s) 371
AgeI ACCGGT 1 cut(s) 112
AgsI TTSAA 1 cut(s) 391
AjnI CCWGG 2 cut(s) 34, 150
AluBI AGCT 2 cut(s) 394, 415
AluI AGCT 2 cut(s) 394, 415
AlwI GGATC 2 cut(s) 179, 291
AoxI GGCC 3 cut(s) 153, 250, 353
AsiGI ACCGGT 1 cut(s) 112
AspS9I GGNCC 5 cut(s) 141, 154, 210, 250, 353
AsuC2I CCSGG 5 cut(s) 138, 240, 271, 342, 372
AsuHPI GGTGA 2 cut(s) 238, 368
AvaII GGWCC 2 cut(s) 141, 210
BanII GRGCYC 1 cut(s) 312
BarI GAAGNNNNNNTAC 2 cut(s) 42, 74
BccI CCATC 1 cut(s) 283
BceAI ACGGC 1 cut(s) 190
BciT130I CCWGG 2 cut(s) 36, 152
BcnI CCSGG 5 cut(s) 138, 240, 271, 342, 372
BfuAI ACCTGC 1 cut(s) 438
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 7 cut(s) 36, 138, 152, 240, 271, 342, 372
Bme18I GGWCC 2 cut(s) 141, 210
BmgT120I GGNCC 5 cut(s) 141, 154, 210, 250, 353
BmiI GGNNCC 3 cut(s) 91, 142, 339
BmrFI CCNGG 7 cut(s) 36, 138, 152, 240, 271, 342, 372
BmrI ACTGGG 1 cut(s) 191
BmuI ACTGGG 1 cut(s) 191
BpuMI CCSGG 5 cut(s) 138, 240, 271, 342, 372
BsaJI CCNNGG 3 cut(s) 137, 206, 341
BsaWI WCCGGW 1 cut(s) 112
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse118I RCCGGY 1 cut(s) 112
Bse1I ACTGG 2 cut(s) 30, 197
BseBI CCWGG 2 cut(s) 36, 152
BseDI CCNNGG 3 cut(s) 137, 206, 341
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMII CTCAG 1 cut(s) 76
BseNI ACTGG 2 cut(s) 30, 197
BsgI GTGCAG 1 cut(s) 185
BshFI GGCC 3 cut(s) 155, 252, 355
BshTI ACCGGT 1 cut(s) 112
BsiSI CCGG 7 cut(s) 113, 137, 239, 257, 270, 341, 371
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 371
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 3 cut(s) 155, 252, 355
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 2 cut(s) 184, 283
BspACI CCGC 5 cut(s) 5, 75, 294, 306, 379
BspANI GGCC 3 cut(s) 155, 252, 355
BspCNI CTCAG 1 cut(s) 75
BspLI GGNNCC 3 cut(s) 91, 142, 339
BspMI ACCTGC 1 cut(s) 438
BspPI GGATC 2 cut(s) 179, 291
BsrFI RCCGGY 1 cut(s) 112
BsrI ACTGG 2 cut(s) 30, 197
BssAI RCCGGY 1 cut(s) 112
BssECI CCNNGG 3 cut(s) 137, 206, 341
BssMI GATC 2 cut(s) 184, 283
Bst2UI CCWGG 2 cut(s) 36, 152
Bst4CI ACNGT 1 cut(s) 300
Bst6I CTCTTC 1 cut(s) 273
BstC8I GCNNGC 3 cut(s) 10, 254, 308
BstDEI CTNAG 1 cut(s) 62
BstDSI CCRYGG 1 cut(s) 206
BstEII GGTNACC 1 cut(s) 374
BstF5I GGATG 1 cut(s) 412
BstKTI GATC 2 cut(s) 187, 286
BstMBI GATC 2 cut(s) 184, 283
BstMWI GCNNNNNNNGC 1 cut(s) 361
BstNI CCWGG 2 cut(s) 36, 152
BstPI GGTNACC 1 cut(s) 374
BstSCI CCNGG 7 cut(s) 34, 136, 150, 238, 269, 340, 370
BstX2I RGATCY 1 cut(s) 184
BstXI CCANNNNNNTGG 2 cut(s) 151, 220
BstYI RGATCY 1 cut(s) 184
BsuRI GGCC 3 cut(s) 155, 252, 355
BtgI CCRYGG 1 cut(s) 206
BtsCI GGATG 1 cut(s) 412
BveI ACCTGC 1 cut(s) 438
Cac8I GCNNGC 3 cut(s) 10, 254, 308
Cfr10I RCCGGY 1 cut(s) 112
Cfr13I GGNCC 5 cut(s) 141, 154, 210, 250, 353
Csp6I GTAC 2 cut(s) 70, 124
CspAI ACCGGT 1 cut(s) 112
CviJI RGCY 8 cut(s) 92, 150, 155, 252, 310, 355, 394, 415
CviKI_1 RGCY 8 cut(s) 92, 150, 155, 252, 310, 355, 394, 415
CviQI GTAC 2 cut(s) 70, 124
DdeI CTNAG 1 cut(s) 62
DpnI GATC 2 cut(s) 186, 285
DpnII GATC 2 cut(s) 184, 283
DraIII CACNNNGTG 1 cut(s) 242
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
EciI GGCGGA 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 312
Eco47I GGWCC 2 cut(s) 141, 210
Eco91I GGTNACC 1 cut(s) 374
EcoO109I RGGNCCY 1 cut(s) 250
EcoO65I GGTNACC 1 cut(s) 374
EcoRII CCWGG 2 cut(s) 34, 150
EcoT38I GRGCYC 1 cut(s) 312
FaiI YATR 2 cut(s) 303, 399
FaqI GGGAC 1 cut(s) 154
FauI CCCGC 1 cut(s) 299
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 419
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 3 cut(s) 155, 252, 355
HapII CCGG 7 cut(s) 113, 137, 239, 257, 270, 341, 371
HindIII AAGCTT 1 cut(s) 413
HpaII CCGG 7 cut(s) 113, 137, 239, 257, 270, 341, 371
HphI GGTGA 2 cut(s) 238, 368
Hpy166II GTNNAC 3 cut(s) 72, 210, 229
Hpy188I TCNGA 4 cut(s) 23, 65, 189, 288
Hpy8I GTNNAC 3 cut(s) 72, 210, 229
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 5 cut(s) 44, 74, 241, 254, 311
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4V TGCA 2 cut(s) 166, 447
HpyF10VI GCNNNNNNNGC 1 cut(s) 361
HpyF3I CTNAG 1 cut(s) 62
Kzo9I GATC 2 cut(s) 184, 283
LmnI GCTCC 1 cut(s) 89
MaeIII GTNAC 3 cut(s) 320, 374, 425
MalI GATC 2 cut(s) 186, 285
MboI GATC 2 cut(s) 184, 283
MboII GAAGA 2 cut(s) 109, 290
MfeI CAATTG 1 cut(s) 214
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 1 cut(s) 214
MnlI CCTC 2 cut(s) 274, 376
MseI TTAA 1 cut(s) 332
MspI CCGG 7 cut(s) 113, 137, 239, 257, 270, 341, 371
MspR9I CCNGG 7 cut(s) 36, 138, 152, 240, 271, 342, 372
MunI CAATTG 1 cut(s) 214
MvaI CCWGG 2 cut(s) 36, 152
MwoI GCNNNNNNNGC 1 cut(s) 361
NciI CCSGG 5 cut(s) 138, 240, 271, 342, 372
NdeII GATC 2 cut(s) 184, 283
NlaIV GGNNCC 3 cut(s) 91, 142, 339
NmuCI GTSAC 2 cut(s) 374, 425
PaqCI CACCTGC 1 cut(s) 438
PfoI TCCNGGA 1 cut(s) 269
PinAI ACCGGT 1 cut(s) 112
PkrI GCNGC 1 cut(s) 7
Psp6I CCWGG 2 cut(s) 34, 150
PspEI GGTNACC 1 cut(s) 374
PspGI CCWGG 2 cut(s) 34, 150
PspN4I GGNNCC 3 cut(s) 91, 142, 339
PspPI GGNCC 5 cut(s) 141, 154, 210, 250, 353
PsuI RGATCY 1 cut(s) 184
RsaI GTAC 2 cut(s) 71, 125
RsaNI GTAC 2 cut(s) 70, 124
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 184, 283
Sau96I GGNCC 5 cut(s) 141, 154, 210, 250, 353
ScrFI CCNGG 7 cut(s) 36, 138, 152, 240, 271, 342, 372
SduI GDGCHC 1 cut(s) 312
SetI ASST 7 cut(s) 85, 265, 322, 339, 396, 417, 452
SinI GGWCC 2 cut(s) 141, 210
Sse9I AATT 1 cut(s) 214
SsiI CCGC 5 cut(s) 5, 75, 294, 306, 379
StyD4I CCNGG 7 cut(s) 34, 136, 150, 238, 269, 340, 370
TaaI ACNGT 1 cut(s) 300
TaqI TCGA 1 cut(s) 384
TasI AATT 1 cut(s) 214
TatI WGTACW 1 cut(s) 69
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TseFI GTSAC 2 cut(s) 374, 425
Tsp45I GTSAC 2 cut(s) 374, 425
TspDTI ATGAA 1 cut(s) 407
VpaK11BI GGWCC 2 cut(s) 141, 210
XcmI CCANNNNNNNNNTGG 3 cut(s) 117, 204, 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.