FvH4_6g11060

UPF0098 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015482
Physical Location & Seq
Reverse (-)
6610285 .. 6611497
1213 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11060.t1

Sequence Viewer

Length: 507 bp
ATGGCGGCAAGCGACGAGTTCAGACTAGTCTTACCAGGAATAGACCACGAAGGAAAACTACCCAGAAAGTACACCGCAGAAGGTCAAGGAGCAAGGAAGAACATATCTCCCCCAGTAGAATGGTACAACTTGCCTCCAGGGACCAAGAGCTTGGCCCTTGTGGTGGAGATCATAGATGCACCGGATCCGAACGACCCGGTTGTGCCGTTTACCAATTGGGTGGTGGTGAACATTCCCCCCGGTGTCAAGTCTCTCCCGGAGGGTTTTTCCGGGAAAGAAGAGGATCAGATGGGCGGACAGTACGGCGGGCTGAAAGAAGGGAACAATGACTTGAAGGTTCCGGGGTGGTGTGGCCCGAAGATGCCCTCGCCGGGTCACCGCTTCGAGTTCAAGCTCTATGCTTTGGATGATGAGCTTAACCTAGGTCACAAGGTGACGAAGGAGAAGGTGTTGGAGACAATTGAAGGGCATGTGCTCGGAGAGTCAGTGGTGACTGCGTATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBP

Protein Analysis

169

Amino Acids

18.36

Weight (kDa)

5.1

Isoelectric Point (pI)

41.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 19 - 168 1.6e-30 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01300 AT5G01300 AT5G01300
fragaria_vesca FvH4_6g11060
malus_domestica MD04G1161900.v1.1
prunus_persica Prupe.6G281700_v2.0.a1
pyrus_communis pycom04g14490
rosa_chinensis RchiOBHm_Chr3g0462371
rosa_laevigata RLG00000024862
rosa_multiflora Rmu_sc0002134.1_g000001
rosa_roxburghii Rroxscaffold_6G00417540
rosa_rugosa Rorug03G0056400
rosa_samantha Rh3BG118100 Rh3CG120900 Rh3DG120100
rosa_wichuraiana Rw3G009720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 5, 75, 294, 306, 379
AclWI GGATC 3 cut(s) 179, 192, 291
AdeI CACNNNGTG 1 cut(s) 433
AfaI GTAC 3 cut(s) 71, 125, 302
AfiI CCNNNNNNNGG 2 cut(s) 163, 371
AgsI TTSAA 3 cut(s) 334, 391, 464
AhlI ACTAGT 1 cut(s) 25
AjnI CCWGG 2 cut(s) 34, 136
AluBI AGCT 3 cut(s) 150, 394, 415
AluI AGCT 3 cut(s) 150, 394, 415
Alw21I GWGCWC 1 cut(s) 477
Alw26I GTCTC 2 cut(s) 255, 449
AlwI GGATC 3 cut(s) 179, 192, 291
AoxI GGCC 2 cut(s) 153, 352
AspA2I CCTAGG 1 cut(s) 421
AspS9I GGNCC 3 cut(s) 141, 154, 353
AsuC2I CCSGG 6 cut(s) 197, 240, 257, 271, 342, 372
AsuHPI GGTGA 4 cut(s) 238, 368, 445, 502
AvaII GGWCC 1 cut(s) 141
AvrII CCTAGG 1 cut(s) 421
BamHI GGATCC 1 cut(s) 184
BarI GAAGNNNNNNTAC 2 cut(s) 42, 74
Bbv12I GWGCWC 1 cut(s) 477
BccI CCATC 1 cut(s) 283
BceAI ACGGC 2 cut(s) 190, 319
BciT130I CCWGG 2 cut(s) 36, 138
BcnI CCSGG 6 cut(s) 197, 240, 257, 271, 342, 372
BcoDI GTCTC 2 cut(s) 255, 449
BcuI ACTAGT 1 cut(s) 25
BfaI CTAG 2 cut(s) 26, 422
BisI GCNGC 1 cut(s) 6
BlnI CCTAGG 1 cut(s) 421
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 8 cut(s) 36, 138, 197, 240, 257, 271, 342, 372
Bme18I GGWCC 1 cut(s) 141
BmgT120I GGNCC 3 cut(s) 141, 154, 353
BmiI GGNNCC 3 cut(s) 142, 186, 339
BmrFI CCNGG 8 cut(s) 36, 138, 197, 240, 257, 271, 342, 372
BmrI ACTGGG 1 cut(s) 107
BmsI GCATC 2 cut(s) 166, 351
BmuI ACTGGG 1 cut(s) 107
BpmI CTGGAG 1 cut(s) 120
BpuMI CCSGG 6 cut(s) 197, 240, 257, 271, 342, 372
BsaJI CCNNGG 4 cut(s) 137, 238, 341, 421
BsaWI WCCGGW 1 cut(s) 181
BsaXI ACNNNNNCTCC 4 cut(s) 434, 464, 471, 501
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 371
Bse1I ACTGG 1 cut(s) 113
BseBI CCWGG 2 cut(s) 36, 138
BseDI CCNNGG 4 cut(s) 137, 238, 341, 421
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 2 cut(s) 163, 371
BseNI ACTGG 1 cut(s) 113
BshFI GGCC 2 cut(s) 155, 354
BsiHKAI GWGCWC 1 cut(s) 477
BsiSI CCGG 7 cut(s) 182, 197, 240, 257, 270, 341, 371
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 2 cut(s) 163, 371
BsmAI GTCTC 2 cut(s) 255, 449
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 2 cut(s) 155, 354
Bsp1286I GDGCHC 1 cut(s) 477
Bsp143I GATC 3 cut(s) 168, 184, 283
BspACI CCGC 5 cut(s) 5, 75, 294, 306, 379
BspANI GGCC 2 cut(s) 155, 354
BspLI GGNNCC 3 cut(s) 142, 186, 339
BspPI GGATC 3 cut(s) 179, 192, 291
BsrI ACTGG 1 cut(s) 113
BssECI CCNNGG 4 cut(s) 137, 238, 341, 421
BssMI GATC 3 cut(s) 168, 184, 283
BssT1I CCWWGG 1 cut(s) 421
Bst2UI CCWGG 2 cut(s) 36, 138
Bst4CI ACNGT 1 cut(s) 300
Bst6I CTCTTC 1 cut(s) 273
BstC8I GCNNGC 2 cut(s) 10, 308
BstEII GGTNACC 1 cut(s) 374
BstF5I GGATG 1 cut(s) 412
BstKTI GATC 3 cut(s) 171, 187, 286
BstMAI GTCTC 2 cut(s) 255, 449
BstMBI GATC 3 cut(s) 168, 184, 283
BstNI CCWGG 2 cut(s) 36, 138
BstNSI RCATGY 1 cut(s) 473
BstPI GGTNACC 1 cut(s) 374
BstSCI CCNGG 8 cut(s) 34, 136, 195, 238, 255, 269, 340, 370
BstX2I RGATCY 1 cut(s) 184
BstXI CCANNNNNNTGG 3 cut(s) 120, 151, 220
BstYI RGATCY 1 cut(s) 184
BsuRI GGCC 2 cut(s) 155, 354
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 1 cut(s) 492
Cac8I GCNNGC 2 cut(s) 10, 308
Cfr13I GGNCC 3 cut(s) 141, 154, 353
Csp6I GTAC 3 cut(s) 70, 124, 301
CviAII CATG 1 cut(s) 470
CviJI RGCY 6 cut(s) 150, 155, 310, 354, 394, 415
CviKI_1 RGCY 6 cut(s) 150, 155, 310, 354, 394, 415
CviQI GTAC 3 cut(s) 70, 124, 301
DpnI GATC 3 cut(s) 170, 186, 285
DpnII GATC 3 cut(s) 168, 184, 283
DraIII CACNNNGTG 1 cut(s) 433
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
EciI GGCGGA 1 cut(s) 309
Eco130I CCWWGG 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 141
Eco91I GGTNACC 1 cut(s) 374
EcoO65I GGTNACC 1 cut(s) 374
EcoRII CCWGG 2 cut(s) 34, 136
EcoT14I CCWWGG 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 421
FaeI CATG 1 cut(s) 473
FaiI YATR 4 cut(s) 104, 173, 399, 471
FaqI GGGAC 1 cut(s) 154
FatI CATG 1 cut(s) 469
FauI CCCGC 1 cut(s) 299
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 419
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 2 cut(s) 26, 422
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 2 cut(s) 155, 354
HapII CCGG 7 cut(s) 182, 197, 240, 257, 270, 341, 371
Hin1II CATG 1 cut(s) 473
HinfI GANTC 1 cut(s) 482
HpaII CCGG 7 cut(s) 182, 197, 240, 257, 270, 341, 371
HphI GGTGA 4 cut(s) 238, 368, 445, 502
Hpy166II GTNNAC 3 cut(s) 72, 210, 229
Hpy188I TCNGA 4 cut(s) 23, 189, 288, 479
Hpy8I GTNNAC 3 cut(s) 72, 210, 229
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 7 cut(s) 44, 74, 311, 328, 433, 439, 458
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4V TGCA 1 cut(s) 179
Hsp92II CATG 1 cut(s) 473
Kzo9I GATC 3 cut(s) 168, 184, 283
LmnI GCTCC 1 cut(s) 89
LweI GCATC 2 cut(s) 166, 351
MaeI CTAG 2 cut(s) 26, 422
MaeIII GTNAC 4 cut(s) 374, 425, 433, 490
MalI GATC 3 cut(s) 170, 186, 285
MboI GATC 3 cut(s) 168, 184, 283
MboII GAAGA 3 cut(s) 109, 290, 370
MfeI CAATTG 2 cut(s) 214, 459
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 477
MluCI AATT 2 cut(s) 214, 459
MlyI GAGTC 1 cut(s) 491
MmeI TCCRAC 1 cut(s) 432
MnlI CCTC 4 cut(s) 144, 253, 274, 376
MseI TTAA 1 cut(s) 417
MspI CCGG 7 cut(s) 182, 197, 240, 257, 270, 341, 371
MspR9I CCNGG 8 cut(s) 36, 138, 197, 240, 257, 271, 342, 372
MunI CAATTG 2 cut(s) 214, 459
MvaI CCWGG 2 cut(s) 36, 138
NciI CCSGG 6 cut(s) 197, 240, 257, 271, 342, 372
NdeII GATC 3 cut(s) 168, 184, 283
NlaIII CATG 1 cut(s) 473
NlaIV GGNNCC 3 cut(s) 142, 186, 339
NmuCI GTSAC 4 cut(s) 374, 425, 433, 490
NspI RCATGY 1 cut(s) 473
PfoI TCCNGGA 2 cut(s) 255, 269
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 490
PpsI GAGTC 1 cut(s) 490
Psp6I CCWGG 2 cut(s) 34, 136
PspEI GGTNACC 1 cut(s) 374
PspGI CCWGG 2 cut(s) 34, 136
PspN4I GGNNCC 3 cut(s) 142, 186, 339
PspPI GGNCC 3 cut(s) 141, 154, 353
PsuI RGATCY 1 cut(s) 184
RsaI GTAC 3 cut(s) 71, 125, 302
RsaNI GTAC 3 cut(s) 70, 124, 301
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 168, 184, 283
Sau96I GGNCC 3 cut(s) 141, 154, 353
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 8 cut(s) 36, 138, 197, 240, 257, 271, 342, 372
SduI GDGCHC 1 cut(s) 477
SetI ASST 9 cut(s) 85, 152, 339, 396, 417, 423, 427, 435, 450
SfaNI GCATC 2 cut(s) 166, 351
SinI GGWCC 1 cut(s) 141
SpeI ACTAGT 1 cut(s) 25
Sse9I AATT 2 cut(s) 214, 459
SsiI CCGC 5 cut(s) 5, 75, 294, 306, 379
SspMI CTAG 2 cut(s) 26, 422
StyD4I CCNGG 8 cut(s) 34, 136, 195, 238, 255, 269, 340, 370
StyI CCWWGG 1 cut(s) 421
TaaI ACNGT 1 cut(s) 300
TaqI TCGA 1 cut(s) 384
TasI AATT 2 cut(s) 214, 459
TatI WGTACW 1 cut(s) 69
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 1 cut(s) 492
TseFI GTSAC 4 cut(s) 374, 425, 433, 490
Tsp45I GTSAC 4 cut(s) 374, 425, 433, 490
TspRI CASTG 1 cut(s) 492
VpaK11BI GGWCC 1 cut(s) 141
XceI RCATGY 1 cut(s) 473
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XmaJI CCTAGG 1 cut(s) 421
XspI CTAG 2 cut(s) 26, 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.