Rorug03G0056400

UPF0098 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0015482
Physical Location & Seq
Forward (+)
4299982 .. 4301777
1796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0056400.1

Sequence Viewer

Length: 1404 bp
ATGCTTTATCTGTTCTTTGATTTCTTATACATGTTCTTCAATTTCTTGATCCTTAATGTATATTCAAACCCTAGCTTTGTTGTTTATGCACATACATATATACATTTATATGTGTTCCATCTTCTATCTTTTGAAGGAACTAGGGTTTTAGCTCTCCAAAATCAGGAATCAGGAATCAGGAATGGACATTGGGACACCATATCTCTTCTTTGTGTAGAAATTGAACTAGAAAAAATGTCAGTTGTAGTTGCCAATAAGAAACTTAAGAGAGAAATCCCACCACCACAACCACCACCATGGTCTGATCTTAACCTTGACATATTGATTTGCATCATGGGACGCCTTTGTTATGTGGACCAGATTCATTTTCGTGCTGTCTGCAAGAATTGGAGACTAGTTTCTGGTGTGAAGCCTATAGATAAACTCCCTTGGGTTCTGACATTGAATTTCAATTGCAAGCATGATTATTATCCCATAACCCTCCATGATCCATCTAGCTGCATTACATATGAGCTTGGTCATGAAATCGATCGGTCAAGTTTGCCTGGGTTTGGCAAACTACAAGTCTGTGGTGCAGGAAAGAACGGTTGGTTGCTTGTAGCAGAGATTTCACCTAACATTACTTTTGACTCTAATATTTACCTCTACAATCCTTTCAACGATTGGGCGGCTATCAATTTACCCCATTTGACTAGCTCTAGGATTAAAGCCGCGTTTGGTGGTACCTCTGATCTAACATCCAAAGATTGTTTGTTTTTCGCGGTGCATGATGTTGGAGAGGATCAAGAGGGAATGAGGATTAGCACTTGCCGCCATGGTGATAGAAAGTGGACTAAACAGTTTACAGATCGACGTAGTAGGGAGATAGTAATTGGTGTGTTCCATGTCAAGGGCATCTTCTTCTGTGTCTTCAAAAGTGGAATTCTAGGTTCATTCAACCCGGATACCAAAATTTGGAGCTTGCTGATTACTTCGGAAAACATGGATTTAGTGGAGTTACGAAACCTAGCAGCTTTTGAAGCTAGTGTTGTTGAGTCTGATGGAGAGGTGTTGCTAGTGTACTGGATACGGGGGTATAAGCCTTGGCACATTTTCAGGCTAGATTGGTTGCAAATGAAATGGGTGAAGGAGGTTAGCTTGGGTAAAAGAGTGTTATTTCTTGGTGACATCTCGTTGTTGTATTCTGCTGATGGTGACATAAAGGATTTAGCTGATCGTATCTATTATCAGGGTTTCAGGAAATCTTACTTCTATCCAATCAAGTCCGGTATTGGTAAGCTCCGCAGCAATGCATTGATACGCCAGTCATGCATACATTATGAGGCACGCAGCGATCATATGCTCAGAGTTTGGATTGAACCACCAACGCTATACAGAGATGCAGTACATGGCAGCATGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBP

Protein Analysis

467

Amino Acids

53.94

Weight (kDa)

7.94

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 100 - 132 4.8e-07 F-box domain
Beta-prop_KIB1-4 PF03478 176 - 409 8.4e-21 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01300 AT5G01300 AT5G01300
fragaria_vesca FvH4_6g11060
malus_domestica MD04G1161900.v1.1
prunus_persica Prupe.6G281700_v2.0.a1
pyrus_communis pycom04g14490
rosa_chinensis RchiOBHm_Chr3g0462371
rosa_laevigata RLG00000024862
rosa_multiflora Rmu_sc0002134.1_g000001
rosa_roxburghii Rroxscaffold_6G00417540
rosa_rugosa Rorug03G0056400
rosa_samantha Rh3BG118100 Rh3CG120900 Rh3DG120100
rosa_wichuraiana Rw3G009720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 722
AccB1I GGYRCC 1 cut(s) 722
AccB7I CCANNNNNTGG 1 cut(s) 954
AccII CGCG 2 cut(s) 713, 761
AciI CCGC 5 cut(s) 668, 711, 761, 811, 1282
AclWI GGATC 3 cut(s) 43, 482, 789
AcsI RAATTY 3 cut(s) 445, 921, 951
AcyI GRCGYC 1 cut(s) 340
AfaI GTAC 3 cut(s) 724, 1061, 1386
AfiI CCNNNNNNNGG 4 cut(s) 163, 551, 889, 954
AflII CTTAAG 1 cut(s) 263
AflIII ACRYGT 1 cut(s) 30
AhlI ACTAGT 1 cut(s) 394
AjnI CCWGG 1 cut(s) 544
AjuI GAANNNNNNNTTGG 2 cut(s) 571, 603
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 3 cut(s) 43, 482, 789
ApeKI GCWGC 5 cut(s) 498, 1010, 1284, 1329, 1392
ApoI RAATTY 3 cut(s) 445, 921, 951
ArsI GACNNNNNNTTYG 2 cut(s) 549, 581
Asp718I GGTACC 1 cut(s) 722
AspS9I GGNCC 1 cut(s) 355
AsuC2I CCSGG 1 cut(s) 941
AsuHPI GGTGA 5 cut(s) 603, 830, 1135, 1175, 1205
AvaII GGWCC 1 cut(s) 355
BaeI ACNNNNGTAYC 4 cut(s) 1058, 1091, 1289, 1322
BanI GGYRCC 1 cut(s) 722
BbsI GAAGAC 1 cut(s) 901
BbvI GCAGC 4 cut(s) 485, 1022, 1296, 1341
BccI CCATC 4 cut(s) 126, 499, 1034, 1184
BciT130I CCWGG 1 cut(s) 546
BciVI GTATCC 2 cut(s) 937, 1059
BcnI CCSGG 1 cut(s) 941
BcoDI GTCTC 1 cut(s) 385
BcuI ACTAGT 1 cut(s) 394
BfmI CTRYAG 1 cut(s) 414
BfrI CTTAAG 1 cut(s) 263
BfuI GTATCC 2 cut(s) 937, 1059
BisI GCNGC 8 cut(s) 499, 669, 711, 811, 1011, 1285, 1330, 1393
BlsI GCNGC 8 cut(s) 500, 670, 712, 812, 1012, 1286, 1331, 1394
Bme1390I CCNGG 2 cut(s) 546, 941
Bme18I GGWCC 1 cut(s) 355
BmgT120I GGNCC 1 cut(s) 355
BmiI GGNNCC 1 cut(s) 724
BmrFI CCNGG 2 cut(s) 546, 941
BmsI GCATC 3 cut(s) 339, 903, 1369
BpiI GAAGAC 1 cut(s) 901
BpuMI CCSGG 1 cut(s) 941
Bsa29I ATCGAT 1 cut(s) 528
BsaBI GATNNNNATC 2 cut(s) 329, 468
BsaHI GRCGYC 1 cut(s) 340
BsaJI CCNNGG 5 cut(s) 296, 428, 545, 814, 1082
BsaWI WCCGGW 1 cut(s) 1265
Bsc4I CCNNNNNNNGG 4 cut(s) 163, 551, 889, 954
Bse1I ACTGG 2 cut(s) 1067, 1303
Bse3DI GCAATG 1 cut(s) 1294
Bse8I GATNNNNATC 2 cut(s) 329, 468
BseBI CCWGG 1 cut(s) 546
BseCI ATCGAT 1 cut(s) 528
BseDI CCNNGG 5 cut(s) 296, 428, 545, 814, 1082
BseGI GGATG 1 cut(s) 737
BseJI GATNNNNATC 2 cut(s) 329, 468
BseLI CCNNNNNNNGG 4 cut(s) 163, 551, 889, 954
BseMI GCAATG 1 cut(s) 1294
BseMII CTCAG 1 cut(s) 1357
BseNI ACTGG 2 cut(s) 1067, 1303
BseXI GCAGC 4 cut(s) 485, 1022, 1296, 1341
BsgI GTGCAG 1 cut(s) 594
Bsh1236I CGCG 2 cut(s) 713, 761
Bsh1285I CGRYCG 1 cut(s) 532
BshNI GGYRCC 1 cut(s) 722
BshVI ATCGAT 1 cut(s) 528
BsiEI CGRYCG 1 cut(s) 532
BsiSI CCGG 2 cut(s) 941, 1266
BslFI GGGAC 2 cut(s) 206, 351
BslI CCNNNNNNNGG 4 cut(s) 163, 551, 889, 954
BsmAI GTCTC 1 cut(s) 385
BsmFI GGGAC 2 cut(s) 206, 351
Bsp143I GATC 9 cut(s) 48, 304, 487, 529, 730, 781, 847, 1213, 1333
Bsp19I CCATGG 2 cut(s) 296, 814
BspACI CCGC 5 cut(s) 668, 711, 761, 811, 1282
BspCNI CTCAG 1 cut(s) 1356
BspDI ATCGAT 1 cut(s) 528
BspFNI CGCG 2 cut(s) 713, 761
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 1 cut(s) 724
BspPI GGATC 3 cut(s) 43, 482, 789
BspT107I GGYRCC 1 cut(s) 722
BspTI CTTAAG 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 1294
BsrI ACTGG 2 cut(s) 1067, 1303
BssECI CCNNGG 5 cut(s) 296, 428, 545, 814, 1082
BssMI GATC 9 cut(s) 48, 304, 487, 529, 730, 781, 847, 1213, 1333
BssNI GRCGYC 1 cut(s) 340
BssT1I CCWWGG 4 cut(s) 296, 428, 814, 1082
Bst2UI CCWGG 1 cut(s) 546
Bst4CI ACNGT 2 cut(s) 587, 840
Bst6I CTCTTC 1 cut(s) 210
BstACI GRCGYC 1 cut(s) 340
BstAFI CTTAAG 1 cut(s) 263
BstC8I GCNNGC 3 cut(s) 458, 962, 1327
BstDEI CTNAG 1 cut(s) 1343
BstDSI CCRYGG 2 cut(s) 296, 814
BstF5I GGATG 1 cut(s) 737
BstFNI CGCG 2 cut(s) 713, 761
BstKTI GATC 9 cut(s) 51, 307, 490, 532, 733, 784, 850, 1216, 1336
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 9 cut(s) 48, 304, 487, 529, 730, 781, 847, 1213, 1333
BstMCI CGRYCG 1 cut(s) 532
BstMWI GCNNNNNNNGC 3 cut(s) 810, 1019, 1308
BstNI CCWGG 1 cut(s) 546
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 2 cut(s) 544, 939
BstSFI CTRYAG 1 cut(s) 414
BstUI CGCG 2 cut(s) 713, 761
BstV1I GCAGC 4 cut(s) 485, 1022, 1296, 1341
BstV2I GAAGAC 1 cut(s) 901
BstXI CCANNNNNNTGG 1 cut(s) 297
Bsu15I ATCGAT 1 cut(s) 528
BsuI GTATCC 2 cut(s) 937, 1059
BsuTUI ATCGAT 1 cut(s) 528
BtgI CCRYGG 2 cut(s) 296, 814
BtsCI GGATG 1 cut(s) 737
Cac8I GCNNGC 3 cut(s) 458, 962, 1327
CciI TCATGA 1 cut(s) 520
Cfr13I GGNCC 1 cut(s) 355
ClaI ATCGAT 1 cut(s) 528
CseI GACGC 1 cut(s) 348
Csp6I GTAC 3 cut(s) 723, 1060, 1385
CviQI GTAC 3 cut(s) 723, 1060, 1385
DdeI CTNAG 1 cut(s) 1343
DpnI GATC 9 cut(s) 50, 306, 489, 531, 732, 783, 849, 1215, 1335
DpnII GATC 9 cut(s) 48, 304, 487, 529, 730, 781, 847, 1213, 1333
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco130I CCWWGG 4 cut(s) 296, 428, 814, 1082
Eco47I GGWCC 1 cut(s) 355
EcoRI GAATTC 1 cut(s) 921
EcoRII CCWGG 1 cut(s) 544
EcoT14I CCWWGG 4 cut(s) 296, 428, 814, 1082
EcoT22I ATGCAT 2 cut(s) 1294, 1313
ErhI CCWWGG 4 cut(s) 296, 428, 814, 1082
FalI AAGNNNNNCTT 2 cut(s) 881, 913
FaqI GGGAC 2 cut(s) 206, 351
FauNDI CATATG 2 cut(s) 508, 1338
Fnu4HI GCNGC 8 cut(s) 499, 669, 711, 811, 1011, 1285, 1330, 1393
FokI GGATG 1 cut(s) 724
Fsp4HI GCNGC 8 cut(s) 499, 669, 711, 811, 1011, 1285, 1330, 1393
GluI GCNGC 8 cut(s) 499, 669, 711, 811, 1011, 1285, 1330, 1393
HapII CCGG 2 cut(s) 941, 1266
HgaI GACGC 1 cut(s) 348
Hin1I GRCGYC 1 cut(s) 340
HinfI GANTC 5 cut(s) 167, 174, 361, 629, 1034
HpaII CCGG 2 cut(s) 941, 1266
HphI GGTGA 5 cut(s) 603, 830, 1135, 1175, 1205
Hpy166II GTNNAC 4 cut(s) 355, 831, 843, 1060
Hpy188I TCNGA 6 cut(s) 304, 438, 730, 976, 1039, 1346
Hpy188III TCNNGA 7 cut(s) 46, 164, 171, 178, 521, 785, 1237
Hpy8I GTNNAC 4 cut(s) 355, 831, 843, 1060
Hpy99I CGWCG 1 cut(s) 855
HpyAV CCTTC 2 cut(s) 128, 1120
HpyCH4III ACNGT 2 cut(s) 587, 840
HpyCH4IV ACGT 1 cut(s) 853
HpyF10VI GCNNNNNNNGC 3 cut(s) 810, 1019, 1308
HpyF3I CTNAG 1 cut(s) 1343
HpySE526I ACGT 1 cut(s) 853
Hsp92I GRCGYC 1 cut(s) 340
KpnI GGTACC 1 cut(s) 726
Kzo9I GATC 9 cut(s) 48, 304, 487, 529, 730, 781, 847, 1213, 1333
LmnI GCTCC 2 cut(s) 957, 1284
Lsp1109I GCAGC 4 cut(s) 485, 1022, 1296, 1341
LweI GCATC 3 cut(s) 339, 903, 1369
MaeII ACGT 1 cut(s) 853
MaeIII GTNAC 3 cut(s) 996, 1163, 1193
MalI GATC 9 cut(s) 50, 306, 489, 531, 732, 783, 849, 1215, 1335
MboI GATC 9 cut(s) 48, 304, 487, 529, 730, 781, 847, 1213, 1333
MboII GAAGA 6 cut(s) 28, 113, 197, 889, 892, 901
MfeI CAATTG 1 cut(s) 451
MlyI GAGTC 2 cut(s) 623, 1043
MmeI TCCRAC 1 cut(s) 754
MnlI CCTC 9 cut(s) 491, 653, 736, 772, 781, 789, 1039, 1123, 1315
Mph1103I ATGCAT 2 cut(s) 1294, 1313
MseI TTAA 4 cut(s) 54, 264, 309, 705
MslI CAYNNNNRTG 3 cut(s) 108, 295, 369
MspCI CTTAAG 1 cut(s) 263
MspI CCGG 2 cut(s) 941, 1266
MspR9I CCNGG 2 cut(s) 546, 941
MunI CAATTG 1 cut(s) 451
MvaI CCWGG 1 cut(s) 546
MvnI CGCG 2 cut(s) 713, 761
MwoI GCNNNNNNNGC 3 cut(s) 810, 1019, 1308
NciI CCSGG 1 cut(s) 941
NcoI CCATGG 2 cut(s) 296, 814
NdeI CATATG 2 cut(s) 508, 1338
NdeII GATC 9 cut(s) 48, 304, 487, 529, 730, 781, 847, 1213, 1333
NlaIV GGNNCC 1 cut(s) 724
NmuCI GTSAC 2 cut(s) 1163, 1193
NsiI ATGCAT 2 cut(s) 1294, 1313
NspI RCATGY 1 cut(s) 34
PagI TCATGA 1 cut(s) 520
PciI ACATGT 1 cut(s) 30
PfeI GAWTC 3 cut(s) 167, 174, 361
PflMI CCANNNNNTGG 1 cut(s) 954
PkrI GCNGC 8 cut(s) 500, 670, 712, 812, 1012, 1286, 1331, 1394
Ple19I CGATCG 1 cut(s) 532
PleI GAGTC 2 cut(s) 623, 1042
PpsI GAGTC 2 cut(s) 623, 1042
PscI ACATGT 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 544
PspGI CCWGG 1 cut(s) 544
PspN4I GGNNCC 1 cut(s) 724
PspPI GGNCC 1 cut(s) 355
PvuI CGATCG 1 cut(s) 532
RsaI GTAC 3 cut(s) 724, 1061, 1386
RsaNI GTAC 3 cut(s) 723, 1060, 1385
RseI CAYNNNNRTG 3 cut(s) 108, 295, 369
SaqAI TTAA 4 cut(s) 54, 264, 309, 705
SatI GCNGC 8 cut(s) 499, 669, 711, 811, 1011, 1285, 1330, 1393
Sau3AI GATC 9 cut(s) 48, 304, 487, 529, 730, 781, 847, 1213, 1333
Sau96I GGNCC 1 cut(s) 355
SchI GAGTC 2 cut(s) 623, 1043
ScrFI CCNGG 2 cut(s) 546, 941
SfaNI GCATC 3 cut(s) 339, 903, 1369
SfcI CTRYAG 1 cut(s) 414
SinI GGWCC 1 cut(s) 355
SmiMI CAYNNNNRTG 3 cut(s) 108, 295, 369
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SpeI ACTAGT 1 cut(s) 394
SsiI CCGC 5 cut(s) 668, 711, 761, 811, 1282
SspI AATATT 1 cut(s) 637
StyD4I CCNGG 2 cut(s) 544, 939
StyI CCWWGG 4 cut(s) 296, 428, 814, 1082
TaaI ACNGT 2 cut(s) 587, 840
TaiI ACGT 1 cut(s) 856
TaqI TCGA 2 cut(s) 528, 850
TaqII GACCGA 1 cut(s) 522
TatI WGTACW 2 cut(s) 1059, 1384
TauI GCSGC 3 cut(s) 671, 713, 813
TfiI GAWTC 3 cut(s) 167, 174, 361
Tru1I TTAA 4 cut(s) 54, 264, 309, 705
Tru9I TTAA 4 cut(s) 54, 264, 309, 705
TseFI GTSAC 2 cut(s) 1163, 1193
TseI GCWGC 5 cut(s) 498, 1010, 1284, 1329, 1392
Tsp45I GTSAC 2 cut(s) 1163, 1193
TspDTI ATGAA 4 cut(s) 353, 537, 921, 1130
Van91I CCANNNNNTGG 1 cut(s) 954
Vha464I CTTAAG 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 355
XapI RAATTY 3 cut(s) 445, 921, 951
XceI RCATGY 1 cut(s) 34
Zsp2I ATGCAT 2 cut(s) 1294, 1313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.