MD04G1161900.v1.1

UPF0098 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0015482
Physical Location & Seq
Forward (+)
25313461 .. 25314566
1106 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1161900.v1.1.491

Sequence Viewer

Length: 657 bp
ATGATACACCACGCACCTTCTATCGCCAACACGAAACTTCTTCACAGAGACGTGTCTAATATTTGTGCACCCAAAAACCAGATCTGTATAAAGCTCGTAGCTAAAAATAGCCATATAAATCATCAAAGTGCATATGCACAAACCAAAAGAGCTATGGCTTCCGGCGACGAATTCAGATTGACATCACCCGAAATAGACCATGAAGGAAGGTTGCCCAGAAAATACACAGGAGAAGGTCAAGGAGCAAAAAAGAACATATCTCCCCCTTTAGAATGGTACAACTTGCCACATGGGACCAAGAGCCTAGCCCTAGTTGTACAGGACATTGACGCACCCGACCCAAAGGGTCCTCTCGTGCCTTGGACGCATTGGGTTGTGGTGAACATTCCACCGACTCTGAAAAAACTGCCGGAGAGTTTTTCCGGTAAAGAAGAGGAGGTGGGTGGTGAGTATGGCGAGATCAAAGAAGGTAACAATGATTGGAAGGTGCCTGGGTGGCGTGGGCCCATGCTGCCTAATCATGGTCATAGGATCGAGTTCAAGCTTTATGCTTTGGACGATGATCTGCACCTAGGTCACAAGGTGACGAAGGACAAGGTGTTGGAGGCAATTAAAGGGCATGTTCTGGGAGAAGCAGTGTTGATGGCCATTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBP

Protein Analysis

219

Amino Acids

24.28

Weight (kDa)

7.85

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 71 - 218 9e-37 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01300 AT5G01300 AT5G01300
fragaria_vesca FvH4_6g11060
malus_domestica MD04G1161900.v1.1
prunus_persica Prupe.6G281700_v2.0.a1
pyrus_communis pycom04g14490
rosa_chinensis RchiOBHm_Chr3g0462371
rosa_laevigata RLG00000024862
rosa_multiflora Rmu_sc0002134.1_g000001
rosa_roxburghii Rroxscaffold_6G00417540
rosa_rugosa Rorug03G0056400
rosa_samantha Rh3BG118100 Rh3CG120900 Rh3DG120100
rosa_wichuraiana Rw3G009720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 487
AclWI GGATC 1 cut(s) 539
AcoI YGGCCR 1 cut(s) 645
AcsI RAATTY 1 cut(s) 170
AdeI CACNNNGTG 1 cut(s) 583
AfaI GTAC 2 cut(s) 278, 318
AfiI CCNNNNNNNGG 1 cut(s) 521
AflIII ACRYGT 1 cut(s) 51
AgsI TTSAA 1 cut(s) 541
AjiI CACGTC 1 cut(s) 52
AjnI CCWGG 1 cut(s) 490
AluBI AGCT 4 cut(s) 94, 101, 152, 544
AluI AGCT 4 cut(s) 94, 101, 152, 544
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 42
Alw44I GTGCAC 1 cut(s) 66
AlwI GGATC 1 cut(s) 539
AoxI GGCC 2 cut(s) 503, 645
ApaI GGGCCC 1 cut(s) 507
ApaLI GTGCAC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 511
ApoI RAATTY 1 cut(s) 170
AspA2I CCTAGG 1 cut(s) 571
AspS9I GGNCC 4 cut(s) 294, 347, 503, 504
AsuHPI GGTGA 4 cut(s) 177, 391, 458, 595
AvaII GGWCC 2 cut(s) 294, 347
AvrII CCTAGG 1 cut(s) 571
BaeGI GKGCMC 2 cut(s) 70, 507
BalI TGGCCA 1 cut(s) 647
BanI GGYRCC 1 cut(s) 487
BanII GRGCYC 1 cut(s) 507
BauI CACGAG 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 498
BccI CCATC 1 cut(s) 637
BciT130I CCWGG 1 cut(s) 492
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 3 cut(s) 305, 311, 572
BglI GCCNNNNNGGC 1 cut(s) 496
BglII AGATCT 1 cut(s) 81
BisI GCNGC 1 cut(s) 512
BlnI CCTAGG 1 cut(s) 571
BlsI GCNGC 1 cut(s) 513
Bme1390I CCNGG 1 cut(s) 492
Bme18I GGWCC 2 cut(s) 294, 347
BmgBI CACGTC 1 cut(s) 52
BmgT120I GGNCC 4 cut(s) 294, 347, 503, 504
BmiI GGNNCC 4 cut(s) 295, 348, 489, 505
BmrFI CCNGG 1 cut(s) 492
BsaBI GATNNNNATC 1 cut(s) 181
BsaJI CCNNGG 3 cut(s) 359, 491, 571
BsaWI WCCGGW 1 cut(s) 422
BsaXI ACNNNNNCTCC 2 cut(s) 621, 651
Bsc4I CCNNNNNNNGG 1 cut(s) 521
Bse8I GATNNNNATC 1 cut(s) 181
BseBI CCWGG 1 cut(s) 492
BseDI CCNNGG 3 cut(s) 359, 491, 571
BseJI GATNNNNATC 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 521
BseRI GAGGAG 1 cut(s) 449
BseSI GKGCMC 2 cut(s) 70, 507
BseXI GCAGC 1 cut(s) 498
BsgI GTGCAG 1 cut(s) 551
BshFI GGCC 2 cut(s) 505, 647
BshNI GGYRCC 1 cut(s) 487
BsiHKAI GWGCWC 1 cut(s) 70
BsiSI CCGG 3 cut(s) 162, 410, 423
BslFI GGGAC 1 cut(s) 307
BslI CCNNNNNNNGG 1 cut(s) 521
BsmAI GTCTC 1 cut(s) 42
BsmBI CGTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 307
BsnI GGCC 2 cut(s) 505, 647
Bsp120I GGGCCC 1 cut(s) 503
Bsp1286I GDGCHC 2 cut(s) 70, 507
Bsp1407I TGTACA 1 cut(s) 316
Bsp143I GATC 4 cut(s) 81, 459, 531, 562
BspANI GGCC 2 cut(s) 505, 647
BspLI GGNNCC 4 cut(s) 295, 348, 489, 505
BspPI GGATC 1 cut(s) 539
BspT107I GGYRCC 1 cut(s) 487
BsrGI TGTACA 1 cut(s) 316
BssECI CCNNGG 3 cut(s) 359, 491, 571
BssMI GATC 4 cut(s) 81, 459, 531, 562
BssSI CACGAG 1 cut(s) 353
BssT1I CCWWGG 2 cut(s) 359, 571
Bst2BI CACGAG 1 cut(s) 353
Bst2UI CCWGG 1 cut(s) 492
Bst6I CTCTTC 1 cut(s) 426
BstAUI TGTACA 1 cut(s) 316
BstKTI GATC 4 cut(s) 84, 462, 534, 565
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 4 cut(s) 81, 459, 531, 562
BstMWI GCNNNNNNNGC 3 cut(s) 364, 496, 511
BstNI CCWGG 1 cut(s) 492
BstNSI RCATGY 1 cut(s) 623
BstSCI CCNGG 1 cut(s) 490
BstSLI GKGCMC 2 cut(s) 70, 507
BstV1I GCAGC 1 cut(s) 498
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BsuRI GGCC 2 cut(s) 505, 647
BtrI CACGTC 1 cut(s) 52
BtsI GCAGTG 1 cut(s) 642
BtsIMutI CAGTG 1 cut(s) 642
Cfr13I GGNCC 4 cut(s) 294, 347, 503, 504
CseI GACGC 2 cut(s) 338, 373
Csp6I GTAC 2 cut(s) 277, 317
CviAII CATG 5 cut(s) 200, 290, 508, 521, 620
CviQI GTAC 2 cut(s) 277, 317
DpnI GATC 4 cut(s) 83, 461, 533, 564
DpnII GATC 4 cut(s) 81, 459, 531, 562
DraIII CACNNNGTG 1 cut(s) 583
EaeI YGGCCR 1 cut(s) 645
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco130I CCWWGG 2 cut(s) 359, 571
Eco24I GRGCYC 1 cut(s) 507
Eco47I GGWCC 2 cut(s) 294, 347
EcoO109I RGGNCCY 1 cut(s) 347
EcoRI GAATTC 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 490
EcoT14I CCWWGG 2 cut(s) 359, 571
EcoT38I GRGCYC 1 cut(s) 507
ErhI CCWWGG 2 cut(s) 359, 571
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 5 cut(s) 203, 293, 511, 524, 623
FaqI GGGAC 1 cut(s) 307
FatI CATG 5 cut(s) 199, 289, 507, 520, 619
FauNDI CATATG 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 512
FriOI GRGCYC 1 cut(s) 507
Fsp4HI GCNGC 1 cut(s) 512
FspBI CTAG 3 cut(s) 305, 311, 572
GluI GCNGC 1 cut(s) 512
HaeIII GGCC 2 cut(s) 505, 647
HapII CCGG 3 cut(s) 162, 410, 423
HgaI GACGC 2 cut(s) 338, 373
Hin1II CATG 5 cut(s) 203, 293, 511, 524, 623
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 1 cut(s) 394
HpaII CCGG 3 cut(s) 162, 410, 423
HphI GGTGA 4 cut(s) 177, 391, 458, 595
Hpy166II GTNNAC 2 cut(s) 68, 382
Hpy188I TCNGA 3 cut(s) 176, 399, 656
Hpy8I GTNNAC 2 cut(s) 68, 382
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 7 cut(s) 27, 197, 201, 227, 461, 478, 583
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 4 cut(s) 68, 131, 137, 568
HpyF10VI GCNNNNNNNGC 3 cut(s) 364, 496, 511
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 5 cut(s) 203, 293, 511, 524, 623
Kzo9I GATC 4 cut(s) 81, 459, 531, 562
LmnI GCTCC 1 cut(s) 242
Lsp1109I GCAGC 1 cut(s) 498
MaeI CTAG 3 cut(s) 305, 311, 572
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 3 cut(s) 470, 575, 583
MalI GATC 4 cut(s) 83, 461, 533, 564
MboI GATC 4 cut(s) 81, 459, 531, 562
MboII GAAGA 2 cut(s) 32, 443
MflI RGATCY 1 cut(s) 81
MhlI GDGCHC 2 cut(s) 70, 507
MlsI TGGCCA 1 cut(s) 647
MluCI AATT 2 cut(s) 170, 609
MluNI TGGCCA 1 cut(s) 647
MlyI GAGTC 1 cut(s) 388
MmeI TCCRAC 1 cut(s) 582
MnlI CCTC 4 cut(s) 360, 427, 430, 598
Mox20I TGGCCA 1 cut(s) 647
MscI TGGCCA 1 cut(s) 647
MseI TTAA 1 cut(s) 612
MslI CAYNNNNRTG 1 cut(s) 126
Msp20I TGGCCA 1 cut(s) 647
MspI CCGG 3 cut(s) 162, 410, 423
MspR9I CCNGG 1 cut(s) 492
MvaI CCWGG 1 cut(s) 492
MwoI GCNNNNNNNGC 3 cut(s) 364, 496, 511
NdeI CATATG 1 cut(s) 133
NdeII GATC 4 cut(s) 81, 459, 531, 562
NlaIII CATG 5 cut(s) 203, 293, 511, 524, 623
NlaIV GGNNCC 4 cut(s) 295, 348, 489, 505
NmuCI GTSAC 2 cut(s) 575, 583
NspI RCATGY 1 cut(s) 623
PkrI GCNGC 1 cut(s) 513
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
PpuMI RGGWCCY 1 cut(s) 347
Psp5II RGGWCCY 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PspN4I GGNNCC 4 cut(s) 295, 348, 489, 505
PspOMI GGGCCC 1 cut(s) 503
PspPI GGNCC 4 cut(s) 294, 347, 503, 504
PspPPI RGGWCCY 1 cut(s) 347
PsuI RGATCY 1 cut(s) 81
RsaI GTAC 2 cut(s) 278, 318
RsaNI GTAC 2 cut(s) 277, 317
RseI CAYNNNNRTG 1 cut(s) 126
SaqAI TTAA 1 cut(s) 612
SatI GCNGC 1 cut(s) 512
Sau3AI GATC 4 cut(s) 81, 459, 531, 562
Sau96I GGNCC 4 cut(s) 294, 347, 503, 504
SchI GAGTC 1 cut(s) 388
ScrFI CCNGG 1 cut(s) 492
SduI GDGCHC 2 cut(s) 70, 507
SinI GGWCC 2 cut(s) 294, 347
SmiMI CAYNNNNRTG 1 cut(s) 126
Sse9I AATT 2 cut(s) 170, 609
SspI AATATT 1 cut(s) 61
SspMI CTAG 3 cut(s) 305, 311, 572
StyD4I CCNGG 1 cut(s) 490
StyI CCWWGG 2 cut(s) 359, 571
TaiI ACGT 1 cut(s) 54
TaqI TCGA 1 cut(s) 534
TasI AATT 2 cut(s) 170, 609
TatI WGTACW 1 cut(s) 316
Tru1I TTAA 1 cut(s) 612
Tru9I TTAA 1 cut(s) 612
TscAI CASTG 1 cut(s) 642
TseFI GTSAC 2 cut(s) 575, 583
TseI GCWGC 1 cut(s) 511
Tsp45I GTSAC 2 cut(s) 575, 583
TspDTI ATGAA 1 cut(s) 216
TspRI CASTG 1 cut(s) 642
VneI GTGCAC 1 cut(s) 66
VpaK11BI GGWCC 2 cut(s) 294, 347
XapI RAATTY 1 cut(s) 170
XceI RCATGY 1 cut(s) 623
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
XmaJI CCTAGG 1 cut(s) 571
XspI CTAG 3 cut(s) 305, 311, 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.