pycom04g14490

UPF0098 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0015482
Physical Location & Seq
Forward (+)
17398017 .. 17399013
997 bp
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UTR
Exon/CDS
Intron
pycom04g14490.3

Sequence Viewer

Length: 537 bp
ATGTCATCTGCATATGTACAAACCAAAAGAGCTATGGCTTCCGGCGACGAATTCAGATTGACATCACCCGAAATAGACCATGAAGGAAGGTTACCCAGAAAATACACAGGAGAAGGTCAAGGAGCAAAAAAGAACATATCTCCACCTTTAGAATGGTACAACTTGCCACAAGGGACCAAGAGTCTAGCCCTAGTTGTACAGGACATTGACGCACCCGACCCAAAGGGTCCGCTCGTGCCTTGGACGCATTGGGTGGTGGTGAACATTCCACCGACTCTGAAAAAACTGCCGGAGGGTTTTTCCGGTAAAGACGAGGAGGTGGGTGGTGATTATGGCGAGATCAAGGAAGGTAACAATGATTGGAAGGTGCCTGGGTGGCGTGGGCCCATGCTGCCTAATCATGGTCATAGGATCGAGTTCAAGCTTTATGCTTTGGACGATGATCTGCACCTAGGTCACAAGGTGACGAAGGAGAAGGTGTTGGAGGCAATTGAAGGGCATGTTCTGGGAGAAGCAGTGTTGATCGCCATTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBP

Protein Analysis

179

Amino Acids

19.77

Weight (kDa)

5.8

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01300 AT5G01300 AT5G01300
fragaria_vesca FvH4_6g11060
malus_domestica MD04G1161900.v1.1
prunus_persica Prupe.6G281700_v2.0.a1
pyrus_communis pycom04g14490
rosa_chinensis RchiOBHm_Chr3g0462371
rosa_laevigata RLG00000024862
rosa_multiflora Rmu_sc0002134.1_g000001
rosa_roxburghii Rroxscaffold_6G00417540
rosa_rugosa Rorug03G0056400
rosa_samantha Rh3BG118100 Rh3CG120900 Rh3DG120100
rosa_wichuraiana Rw3G009720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 367
AccBSI CCGCTC 1 cut(s) 232
AciI CCGC 1 cut(s) 230
AclWI GGATC 1 cut(s) 419
AcsI RAATTY 1 cut(s) 50
AdeI CACNNNGTG 1 cut(s) 463
AfaI GTAC 3 cut(s) 18, 158, 198
AfiI CCNNNNNNNGG 1 cut(s) 401
AgsI TTSAA 2 cut(s) 421, 494
AhdI GACNNNNNGTC 1 cut(s) 180
AjnI CCWGG 1 cut(s) 370
AluBI AGCT 2 cut(s) 32, 424
AluI AGCT 2 cut(s) 32, 424
AlwI GGATC 1 cut(s) 419
AoxI GGCC 1 cut(s) 383
ApaI GGGCCC 1 cut(s) 387
ApeKI GCWGC 1 cut(s) 391
ApoI RAATTY 1 cut(s) 50
AspA2I CCTAGG 1 cut(s) 451
AspS9I GGNCC 4 cut(s) 174, 227, 383, 384
AsuHPI GGTGA 4 cut(s) 57, 271, 338, 475
AvaII GGWCC 2 cut(s) 174, 227
AvrII CCTAGG 1 cut(s) 451
BaeGI GKGCMC 1 cut(s) 387
BanI GGYRCC 1 cut(s) 367
BanII GRGCYC 1 cut(s) 387
BarI GAAGNNNNNNTAC 2 cut(s) 75, 107
BauI CACGAG 1 cut(s) 233
BbvI GCAGC 1 cut(s) 378
BciT130I CCWGG 1 cut(s) 372
BfaI CTAG 3 cut(s) 185, 191, 452
BglI GCCNNNNNGGC 1 cut(s) 376
BisI GCNGC 1 cut(s) 392
BlnI CCTAGG 1 cut(s) 451
BlsI GCNGC 1 cut(s) 393
Bme1390I CCNGG 1 cut(s) 372
Bme18I GGWCC 2 cut(s) 174, 227
BmeRI GACNNNNNGTC 1 cut(s) 180
BmgT120I GGNCC 4 cut(s) 174, 227, 383, 384
BmiI GGNNCC 4 cut(s) 175, 228, 369, 385
BmrFI CCNGG 1 cut(s) 372
BsaBI GATNNNNATC 1 cut(s) 61
BsaJI CCNNGG 3 cut(s) 239, 371, 451
BsaWI WCCGGW 1 cut(s) 302
BsaXI ACNNNNNCTCC 4 cut(s) 464, 494, 501, 531
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse8I GATNNNNATC 1 cut(s) 61
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 3 cut(s) 239, 371, 451
BseJI GATNNNNATC 1 cut(s) 61
BseLI CCNNNNNNNGG 1 cut(s) 401
BseRI GAGGAG 1 cut(s) 329
BseSI GKGCMC 1 cut(s) 387
BseXI GCAGC 1 cut(s) 378
BsgI GTGCAG 1 cut(s) 431
BshFI GGCC 1 cut(s) 385
BshNI GGYRCC 1 cut(s) 367
BsiSI CCGG 3 cut(s) 42, 290, 303
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 401
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 1 cut(s) 385
Bsp120I GGGCCC 1 cut(s) 383
Bsp1286I GDGCHC 1 cut(s) 387
Bsp1407I TGTACA 2 cut(s) 16, 196
Bsp143I GATC 4 cut(s) 339, 411, 442, 522
BspACI CCGC 1 cut(s) 230
BspANI GGCC 1 cut(s) 385
BspLI GGNNCC 4 cut(s) 175, 228, 369, 385
BspPI GGATC 1 cut(s) 419
BspT107I GGYRCC 1 cut(s) 367
BsrBI CCGCTC 1 cut(s) 232
BsrGI TGTACA 2 cut(s) 16, 196
BssECI CCNNGG 3 cut(s) 239, 371, 451
BssMI GATC 4 cut(s) 339, 411, 442, 522
BssSI CACGAG 1 cut(s) 233
BssT1I CCWWGG 2 cut(s) 239, 451
Bst2BI CACGAG 1 cut(s) 233
Bst2UI CCWGG 1 cut(s) 372
BstAUI TGTACA 2 cut(s) 16, 196
BstEII GGTNACC 1 cut(s) 90
BstKTI GATC 4 cut(s) 342, 414, 445, 525
BstMBI GATC 4 cut(s) 339, 411, 442, 522
BstMWI GCNNNNNNNGC 3 cut(s) 244, 376, 391
BstNI CCWGG 1 cut(s) 372
BstNSI RCATGY 1 cut(s) 503
BstPI GGTNACC 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 370
BstSLI GKGCMC 1 cut(s) 387
BstV1I GCAGC 1 cut(s) 378
BsuRI GGCC 1 cut(s) 385
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 1 cut(s) 522
Cfr13I GGNCC 4 cut(s) 174, 227, 383, 384
CseI GACGC 2 cut(s) 218, 253
Csp6I GTAC 3 cut(s) 17, 157, 197
CviAII CATG 4 cut(s) 80, 388, 401, 500
CviJI RGCY 5 cut(s) 32, 38, 188, 385, 424
CviKI_1 RGCY 5 cut(s) 32, 38, 188, 385, 424
CviQI GTAC 3 cut(s) 17, 157, 197
DpnI GATC 4 cut(s) 341, 413, 444, 524
DpnII GATC 4 cut(s) 339, 411, 442, 522
DraIII CACNNNGTG 1 cut(s) 463
DriI GACNNNNNGTC 1 cut(s) 180
Eam1105I GACNNNNNGTC 1 cut(s) 180
Eco130I CCWWGG 2 cut(s) 239, 451
Eco24I GRGCYC 1 cut(s) 387
Eco47I GGWCC 2 cut(s) 174, 227
Eco91I GGTNACC 1 cut(s) 90
EcoO65I GGTNACC 1 cut(s) 90
EcoRI GAATTC 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 370
EcoT14I CCWWGG 2 cut(s) 239, 451
EcoT38I GRGCYC 1 cut(s) 387
ErhI CCWWGG 2 cut(s) 239, 451
FaeI CATG 4 cut(s) 83, 391, 404, 503
FaqI GGGAC 1 cut(s) 187
FatI CATG 4 cut(s) 79, 387, 400, 499
FauNDI CATATG 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 392
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 1 cut(s) 392
FspBI CTAG 3 cut(s) 185, 191, 452
GluI GCNGC 1 cut(s) 392
HaeIII GGCC 1 cut(s) 385
HapII CCGG 3 cut(s) 42, 290, 303
HgaI GACGC 2 cut(s) 218, 253
Hin1II CATG 4 cut(s) 83, 391, 404, 503
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 2 cut(s) 181, 274
HpaII CCGG 3 cut(s) 42, 290, 303
HphI GGTGA 4 cut(s) 57, 271, 338, 475
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 3 cut(s) 56, 279, 536
Hpy8I GTNNAC 1 cut(s) 262
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 8 cut(s) 77, 81, 107, 341, 358, 463, 469, 488
HpyCH4V TGCA 2 cut(s) 11, 448
HpyF10VI GCNNNNNNNGC 3 cut(s) 244, 376, 391
Hsp92II CATG 4 cut(s) 83, 391, 404, 503
Kzo9I GATC 4 cut(s) 339, 411, 442, 522
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 9 cut(s) 55, 93, 109, 185, 303, 316, 357, 384, 491
Lsp1109I GCAGC 1 cut(s) 378
MaeI CTAG 3 cut(s) 185, 191, 452
MaeIII GTNAC 4 cut(s) 90, 350, 455, 463
MalI GATC 4 cut(s) 341, 413, 444, 524
MbiI CCGCTC 1 cut(s) 232
MboI GATC 4 cut(s) 339, 411, 442, 522
MfeI CAATTG 1 cut(s) 489
MhlI GDGCHC 1 cut(s) 387
MluCI AATT 2 cut(s) 50, 489
MlyI GAGTC 2 cut(s) 190, 268
MmeI TCCRAC 1 cut(s) 462
MnlI CCTC 4 cut(s) 286, 307, 310, 478
MspI CCGG 3 cut(s) 42, 290, 303
MspR9I CCNGG 1 cut(s) 372
MunI CAATTG 1 cut(s) 489
MvaI CCWGG 1 cut(s) 372
MwoI GCNNNNNNNGC 3 cut(s) 244, 376, 391
NdeI CATATG 1 cut(s) 13
NdeII GATC 4 cut(s) 339, 411, 442, 522
NlaIII CATG 4 cut(s) 83, 391, 404, 503
NlaIV GGNNCC 4 cut(s) 175, 228, 369, 385
NmuCI GTSAC 2 cut(s) 455, 463
NspI RCATGY 1 cut(s) 503
PkrI GCNGC 1 cut(s) 393
PleI GAGTC 2 cut(s) 189, 268
PpsI GAGTC 2 cut(s) 189, 268
Psp6I CCWGG 1 cut(s) 370
PspEI GGTNACC 1 cut(s) 90
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 4 cut(s) 175, 228, 369, 385
PspOMI GGGCCC 1 cut(s) 383
PspPI GGNCC 4 cut(s) 174, 227, 383, 384
RsaI GTAC 3 cut(s) 18, 158, 198
RsaNI GTAC 3 cut(s) 17, 157, 197
SatI GCNGC 1 cut(s) 392
Sau3AI GATC 4 cut(s) 339, 411, 442, 522
Sau96I GGNCC 4 cut(s) 174, 227, 383, 384
SchI GAGTC 2 cut(s) 190, 268
ScrFI CCNGG 1 cut(s) 372
SduI GDGCHC 1 cut(s) 387
SinI GGWCC 2 cut(s) 174, 227
Sse9I AATT 2 cut(s) 50, 489
SsiI CCGC 1 cut(s) 230
SspMI CTAG 3 cut(s) 185, 191, 452
StyD4I CCNGG 1 cut(s) 370
StyI CCWWGG 2 cut(s) 239, 451
TaqI TCGA 1 cut(s) 414
TasI AATT 2 cut(s) 50, 489
TatI WGTACW 2 cut(s) 16, 196
TscAI CASTG 1 cut(s) 522
TseFI GTSAC 2 cut(s) 455, 463
TseI GCWGC 1 cut(s) 391
Tsp45I GTSAC 2 cut(s) 455, 463
TspDTI ATGAA 1 cut(s) 96
TspRI CASTG 1 cut(s) 522
VpaK11BI GGWCC 2 cut(s) 174, 227
XapI RAATTY 1 cut(s) 50
XceI RCATGY 1 cut(s) 503
XcmI CCANNNNNNNNNTGG 2 cut(s) 31, 150
XmaJI CCTAGG 1 cut(s) 451
XspI CTAG 3 cut(s) 185, 191, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.