Rroxscaffold_6G00417540

UPF0098 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0015482
Physical Location & Seq
Forward (+)
39233148 .. 39234287
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00417540.1

Sequence Viewer

Length: 507 bp
ATGGCGGCAAGCGACGAGTTCAGACTGGTCTTACCAGGAATAGACCACGAAGGAAAACTACTCAGAAAGTACACCGCAGAAGGTCAAGGAGCCAAGAAGAACATTTCTCCACCAGTAGAATGGTACAACTTACCCCCAGGGACCAAGAGCCTGGCCCTTGTGGTGCAGGACATAGATGCACCAGATCCGAAAGACCCGGTTGTGCCGTGGACCAATTGGGTGGTGGTGAACATTCCACCGGGTGTGAAGTGCCTACCGGAAGGTTTTTCCGGGAAAGAAGAGGATCAGATGGGCGGACAGTATGGAGGGCTCAAAGAAGGTAACAATGACTTAAAGGTTCCGTGGTGGTGTGGGCCAAAGTTGCCCTCGCCGGGTCACCGCTTCGAGTTCAAGCTTTATGCTTTGGATGATGAGCTTCATCTTGGTCACAAGGTGACGAAGGAGAAGGTGTTGGAGGCAATTGAAGGGCATGTGCTTGGAGAATCAGTGATGATTGCGTATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBP

Protein Analysis

168

Amino Acids

18.57

Weight (kDa)

5.36

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 22 - 168 6.5e-31 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01300 AT5G01300 AT5G01300
fragaria_vesca FvH4_6g11060
malus_domestica MD04G1161900.v1.1
prunus_persica Prupe.6G281700_v2.0.a1
pyrus_communis pycom04g14490
rosa_chinensis RchiOBHm_Chr3g0462371
rosa_laevigata RLG00000024862
rosa_multiflora Rmu_sc0002134.1_g000001
rosa_roxburghii Rroxscaffold_6G00417540
rosa_rugosa Rorug03G0056400
rosa_samantha Rh3BG118100 Rh3CG120900 Rh3DG120100
rosa_wichuraiana Rw3G009720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 5, 75, 294, 379
AclWI GGATC 2 cut(s) 179, 291
AdeI CACNNNGTG 2 cut(s) 242, 433
AfaI GTAC 2 cut(s) 71, 125
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 2 cut(s) 391, 464
AjnI CCWGG 3 cut(s) 34, 136, 150
AluBI AGCT 2 cut(s) 394, 415
AluI AGCT 2 cut(s) 394, 415
AlwI GGATC 2 cut(s) 179, 291
AoxI GGCC 2 cut(s) 153, 353
AspS9I GGNCC 4 cut(s) 141, 154, 210, 353
AsuC2I CCSGG 4 cut(s) 197, 240, 271, 372
AsuHPI GGTGA 3 cut(s) 238, 368, 445
AvaII GGWCC 2 cut(s) 141, 210
BanII GRGCYC 1 cut(s) 312
BarI GAAGNNNNNNTAC 2 cut(s) 42, 74
BccI CCATC 1 cut(s) 283
BceAI ACGGC 1 cut(s) 190
BciT130I CCWGG 3 cut(s) 36, 138, 152
BcnI CCSGG 4 cut(s) 197, 240, 271, 372
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 7 cut(s) 36, 138, 152, 197, 240, 271, 372
Bme18I GGWCC 2 cut(s) 141, 210
BmgT120I GGNCC 4 cut(s) 141, 154, 210, 353
BmiI GGNNCC 3 cut(s) 91, 142, 339
BmrFI CCNGG 7 cut(s) 36, 138, 152, 197, 240, 271, 372
BmsI GCATC 1 cut(s) 166
BpuMI CCSGG 4 cut(s) 197, 240, 271, 372
BsaJI CCNNGG 4 cut(s) 136, 137, 206, 341
BsaWI WCCGGW 1 cut(s) 256
BsaXI ACNNNNNCTCC 4 cut(s) 434, 464, 471, 501
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse1I ACTGG 2 cut(s) 30, 113
BseBI CCWGG 3 cut(s) 36, 138, 152
BseDI CCNNGG 4 cut(s) 136, 137, 206, 341
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMII CTCAG 1 cut(s) 76
BseNI ACTGG 2 cut(s) 30, 113
BsgI GTGCAG 1 cut(s) 185
BshFI GGCC 2 cut(s) 155, 355
BsiSI CCGG 5 cut(s) 197, 239, 257, 270, 371
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 371
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 2 cut(s) 155, 355
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 2 cut(s) 184, 283
BspACI CCGC 4 cut(s) 5, 75, 294, 379
BspANI GGCC 2 cut(s) 155, 355
BspCNI CTCAG 1 cut(s) 75
BspLI GGNNCC 3 cut(s) 91, 142, 339
BspPI GGATC 2 cut(s) 179, 291
BsrI ACTGG 2 cut(s) 30, 113
BssECI CCNNGG 4 cut(s) 136, 137, 206, 341
BssMI GATC 2 cut(s) 184, 283
Bst2UI CCWGG 3 cut(s) 36, 138, 152
Bst4CI ACNGT 1 cut(s) 300
Bst6I CTCTTC 1 cut(s) 273
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 1 cut(s) 62
BstDSI CCRYGG 2 cut(s) 206, 341
BstEII GGTNACC 1 cut(s) 374
BstF5I GGATG 1 cut(s) 412
BstKTI GATC 2 cut(s) 187, 286
BstMBI GATC 2 cut(s) 184, 283
BstMWI GCNNNNNNNGC 1 cut(s) 361
BstNI CCWGG 3 cut(s) 36, 138, 152
BstNSI RCATGY 1 cut(s) 473
BstPI GGTNACC 1 cut(s) 374
BstSCI CCNGG 7 cut(s) 34, 136, 150, 195, 238, 269, 370
BstX2I RGATCY 1 cut(s) 184
BstXI CCANNNNNNTGG 3 cut(s) 120, 151, 220
BstYI RGATCY 1 cut(s) 184
BsuRI GGCC 2 cut(s) 155, 355
BtgI CCRYGG 2 cut(s) 206, 341
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 1 cut(s) 492
Cac8I GCNNGC 1 cut(s) 10
Cfr13I GGNCC 4 cut(s) 141, 154, 210, 353
Csp6I GTAC 2 cut(s) 70, 124
CviAII CATG 1 cut(s) 470
CviJI RGCY 7 cut(s) 92, 150, 155, 310, 355, 394, 415
CviKI_1 RGCY 7 cut(s) 92, 150, 155, 310, 355, 394, 415
CviQI GTAC 2 cut(s) 70, 124
DdeI CTNAG 1 cut(s) 62
DpnI GATC 2 cut(s) 186, 285
DpnII GATC 2 cut(s) 184, 283
DraIII CACNNNGTG 2 cut(s) 242, 433
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
EciI GGCGGA 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 312
Eco47I GGWCC 2 cut(s) 141, 210
Eco91I GGTNACC 1 cut(s) 374
EcoO65I GGTNACC 1 cut(s) 374
EcoRII CCWGG 3 cut(s) 34, 136, 150
EcoT38I GRGCYC 1 cut(s) 312
FaeI CATG 1 cut(s) 473
FaiI YATR 4 cut(s) 173, 303, 399, 471
FaqI GGGAC 1 cut(s) 154
FatI CATG 1 cut(s) 469
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 419
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 2 cut(s) 155, 355
HapII CCGG 5 cut(s) 197, 239, 257, 270, 371
Hin1II CATG 1 cut(s) 473
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 1 cut(s) 482
HpaII CCGG 5 cut(s) 197, 239, 257, 270, 371
HphI GGTGA 3 cut(s) 238, 368, 445
Hpy166II GTNNAC 3 cut(s) 72, 210, 229
Hpy188I TCNGA 4 cut(s) 23, 65, 189, 288
Hpy8I GTNNAC 3 cut(s) 72, 210, 229
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 7 cut(s) 44, 74, 254, 311, 433, 439, 458
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4V TGCA 2 cut(s) 166, 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 361
HpyF3I CTNAG 1 cut(s) 62
Hsp92II CATG 1 cut(s) 473
Kzo9I GATC 2 cut(s) 184, 283
LmnI GCTCC 1 cut(s) 89
LweI GCATC 1 cut(s) 166
MaeIII GTNAC 4 cut(s) 320, 374, 425, 433
MalI GATC 2 cut(s) 186, 285
MboI GATC 2 cut(s) 184, 283
MboII GAAGA 2 cut(s) 109, 290
MfeI CAATTG 2 cut(s) 214, 459
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 2 cut(s) 214, 459
MmeI TCCRAC 1 cut(s) 432
MnlI CCTC 4 cut(s) 274, 299, 376, 448
MseI TTAA 1 cut(s) 332
MspI CCGG 5 cut(s) 197, 239, 257, 270, 371
MspR9I CCNGG 7 cut(s) 36, 138, 152, 197, 240, 271, 372
MunI CAATTG 2 cut(s) 214, 459
MvaI CCWGG 3 cut(s) 36, 138, 152
MwoI GCNNNNNNNGC 1 cut(s) 361
NciI CCSGG 4 cut(s) 197, 240, 271, 372
NdeII GATC 2 cut(s) 184, 283
NlaIII CATG 1 cut(s) 473
NlaIV GGNNCC 3 cut(s) 91, 142, 339
NmuCI GTSAC 3 cut(s) 374, 425, 433
NspI RCATGY 1 cut(s) 473
PasI CCCWGGG 1 cut(s) 137
PfeI GAWTC 1 cut(s) 482
PfoI TCCNGGA 1 cut(s) 269
PkrI GCNGC 1 cut(s) 7
Psp6I CCWGG 3 cut(s) 34, 136, 150
PspEI GGTNACC 1 cut(s) 374
PspGI CCWGG 3 cut(s) 34, 136, 150
PspN4I GGNNCC 3 cut(s) 91, 142, 339
PspPI GGNCC 4 cut(s) 141, 154, 210, 353
PsuI RGATCY 1 cut(s) 184
RsaI GTAC 2 cut(s) 71, 125
RsaNI GTAC 2 cut(s) 70, 124
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 184, 283
Sau96I GGNCC 4 cut(s) 141, 154, 210, 353
ScrFI CCNGG 7 cut(s) 36, 138, 152, 197, 240, 271, 372
SduI GDGCHC 1 cut(s) 312
SetI ASST 8 cut(s) 85, 265, 322, 339, 396, 417, 435, 450
SfaNI GCATC 1 cut(s) 166
SinI GGWCC 2 cut(s) 141, 210
Sse9I AATT 2 cut(s) 214, 459
SsiI CCGC 4 cut(s) 5, 75, 294, 379
StyD4I CCNGG 7 cut(s) 34, 136, 150, 195, 238, 269, 370
TaaI ACNGT 1 cut(s) 300
TaqI TCGA 1 cut(s) 384
TasI AATT 2 cut(s) 214, 459
TatI WGTACW 1 cut(s) 69
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 482
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 1 cut(s) 492
TseFI GTSAC 3 cut(s) 374, 425, 433
Tsp45I GTSAC 3 cut(s) 374, 425, 433
TspDTI ATGAA 1 cut(s) 407
TspGWI ACGGA 1 cut(s) 330
TspRI CASTG 1 cut(s) 492
VpaK11BI GGWCC 2 cut(s) 141, 210
XceI RCATGY 1 cut(s) 473
XcmI CCANNNNNNNNNTGG 2 cut(s) 117, 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.