Prupe.6G281700_v2.0.a1

UPF0098 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015482
Physical Location & Seq
Forward (+)
26302830 .. 26303770
941 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G281700.1

Sequence Viewer

Length: 504 bp
ATGGCTTCCAGTGAAGAGTTCAGATTGGTATTACCAGGCGTAGACCACGAAGGAAGGCTGCCCAGAAAATACACAGGAGAAGGCCAAGGGGCAAAGAAGAACATATCTCCACCAATAGAATGGTACAACGTGCCGCAGGGGACCAAGAGCCTGGCCCTGGTTGTACAAGACATTGATGCACCCGACCCGAATGGGCCGATCGTGCCGTGGACCCACTGGGTGGTGGTGAACATCCCACCGACTGTGAAGAAGCTGCCAGAGGGGTTCTCTGGGAAAGAGGAGGAGGTGGGGGGCGATTATGGTGGGATCAAAGAAGGGAACAATGACTGGAAGGTGCCTGGGTGGCGAGGGCCCAAATTGCCTAATCATGGCCATAGGTTCGAGTTCAAGCTCTATGCTTTGGATGATGAACTGCACTTTGGTCACAAGGTGACGAAGGAGAGGGTTTTAGAAGCAATTCAAGGGCATGTGTTGGGAGAAGCGGTCTTGATGGCCATTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBP

Protein Analysis

168

Amino Acids

18.55

Weight (kDa)

5.97

Isoelectric Point (pI)

32.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01300 AT5G01300 AT5G01300
fragaria_vesca FvH4_6g11060
malus_domestica MD04G1161900.v1.1
prunus_persica Prupe.6G281700_v2.0.a1
pyrus_communis pycom04g14490
rosa_chinensis RchiOBHm_Chr3g0462371
rosa_laevigata RLG00000024862
rosa_multiflora Rmu_sc0002134.1_g000001
rosa_roxburghii Rroxscaffold_6G00417540
rosa_rugosa Rorug03G0056400
rosa_samantha Rh3BG118100 Rh3CG120900 Rh3DG120100
rosa_wichuraiana Rw3G009720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 334
AccB7I CCANNNNNTGG 1 cut(s) 220
AccI GTMKAC 1 cut(s) 42
AciI CCGC 2 cut(s) 134, 482
AclWI GGATC 1 cut(s) 314
AcoI YGGCCR 2 cut(s) 370, 492
AdeI CACNNNGTG 2 cut(s) 220, 430
AfaI GTAC 2 cut(s) 125, 165
AfiI CCNNNNNNNGG 3 cut(s) 157, 220, 368
AgsI TTSAA 2 cut(s) 388, 461
AjnI CCWGG 4 cut(s) 34, 150, 156, 337
AjuI GAANNNNNNNTTGG 2 cut(s) 402, 434
AluBI AGCT 2 cut(s) 253, 391
AluI AGCT 2 cut(s) 253, 391
AlwI GGATC 1 cut(s) 314
AoxI GGCC 6 cut(s) 82, 153, 194, 350, 370, 492
ApaI GGGCCC 1 cut(s) 354
ApeKI GCWGC 2 cut(s) 58, 253
Asp700I GAANNNNTTC 1 cut(s) 456
AspS9I GGNCC 6 cut(s) 141, 154, 194, 210, 350, 351
AsuHPI GGTGA 2 cut(s) 238, 442
AvaII GGWCC 2 cut(s) 141, 210
BaeGI GKGCMC 1 cut(s) 354
BalI TGGCCA 2 cut(s) 372, 494
BanI GGYRCC 1 cut(s) 334
BanII GRGCYC 1 cut(s) 354
BbvI GCAGC 2 cut(s) 45, 240
BccI CCATC 1 cut(s) 484
BceAI ACGGC 1 cut(s) 190
BciT130I CCWGG 4 cut(s) 36, 152, 158, 339
BglI GCCNNNNNGGC 1 cut(s) 343
BisI GCNGC 3 cut(s) 59, 134, 254
BlsI GCNGC 3 cut(s) 60, 135, 255
Bme1390I CCNGG 4 cut(s) 36, 152, 158, 339
Bme18I GGWCC 2 cut(s) 141, 210
BmgT120I GGNCC 6 cut(s) 141, 154, 194, 210, 350, 351
BmiI GGNNCC 4 cut(s) 142, 212, 336, 352
BmrFI CCNGG 4 cut(s) 36, 152, 158, 339
BmrI ACTGGG 1 cut(s) 226
BmsI GCATC 1 cut(s) 166
BmuI ACTGGG 1 cut(s) 226
BplI GAGNNNNNCTC 2 cut(s) 251, 283
BsaJI CCNNGG 4 cut(s) 85, 156, 206, 338
BsaXI ACNNNNNCTCC 2 cut(s) 468, 498
Bsc4I CCNNNNNNNGG 3 cut(s) 157, 220, 368
Bse1I ACTGG 3 cut(s) 9, 221, 332
BseBI CCWGG 4 cut(s) 36, 152, 158, 339
BseDI CCNNGG 4 cut(s) 85, 156, 206, 338
BseGI GGATG 2 cut(s) 231, 409
BseLI CCNNNNNNNGG 3 cut(s) 157, 220, 368
BseNI ACTGG 3 cut(s) 9, 221, 332
BseRI GAGGAG 2 cut(s) 293, 296
BseSI GKGCMC 1 cut(s) 354
BseXI GCAGC 2 cut(s) 45, 240
BsgI GTGCAG 1 cut(s) 398
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 6 cut(s) 84, 155, 196, 352, 372, 494
BshNI GGYRCC 1 cut(s) 334
BsiEI CGRYCG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 3 cut(s) 157, 220, 368
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 6 cut(s) 84, 155, 196, 352, 372, 494
Bsp120I GGGCCC 1 cut(s) 350
Bsp1286I GDGCHC 1 cut(s) 354
Bsp1407I TGTACA 1 cut(s) 163
Bsp143I GATC 2 cut(s) 198, 306
BspACI CCGC 2 cut(s) 134, 482
BspANI GGCC 6 cut(s) 84, 155, 196, 352, 372, 494
BspLI GGNNCC 4 cut(s) 142, 212, 336, 352
BspPI GGATC 1 cut(s) 314
BspT107I GGYRCC 1 cut(s) 334
BsrGI TGTACA 1 cut(s) 163
BsrI ACTGG 3 cut(s) 9, 221, 332
BssECI CCNNGG 4 cut(s) 85, 156, 206, 338
BssMI GATC 2 cut(s) 198, 306
BssT1I CCWWGG 1 cut(s) 85
Bst2UI CCWGG 4 cut(s) 36, 152, 158, 339
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 1 cut(s) 9
BstAUI TGTACA 1 cut(s) 163
BstDSI CCRYGG 1 cut(s) 206
BstF5I GGATG 2 cut(s) 231, 409
BstKTI GATC 2 cut(s) 201, 309
BstMBI GATC 2 cut(s) 198, 306
BstMCI CGRYCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 3 cut(s) 202, 343, 358
BstNI CCWGG 4 cut(s) 36, 152, 158, 339
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 4 cut(s) 34, 150, 156, 337
BstSLI GKGCMC 1 cut(s) 354
BstV1I GCAGC 2 cut(s) 45, 240
BstXI CCANNNNNNTGG 2 cut(s) 120, 151
BsuRI GGCC 6 cut(s) 84, 155, 196, 352, 372, 494
BtgI CCRYGG 1 cut(s) 206
BtsCI GGATG 2 cut(s) 231, 409
BtsIMutI CAGTG 2 cut(s) 16, 214
Cfr13I GGNCC 6 cut(s) 141, 154, 194, 210, 350, 351
Csp6I GTAC 2 cut(s) 124, 164
CviAII CATG 2 cut(s) 368, 467
CviQI GTAC 2 cut(s) 124, 164
DpnI GATC 2 cut(s) 200, 308
DpnII GATC 2 cut(s) 198, 306
DraIII CACNNNGTG 2 cut(s) 220, 430
EaeI YGGCCR 2 cut(s) 370, 492
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 354
Eco47I GGWCC 2 cut(s) 141, 210
EcoO109I RGGNCCY 1 cut(s) 350
EcoRII CCWGG 4 cut(s) 34, 150, 156, 337
EcoT14I CCWWGG 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 2 cut(s) 371, 470
FaiI YATR 6 cut(s) 104, 300, 369, 375, 396, 468
FaqI GGGAC 1 cut(s) 154
FatI CATG 2 cut(s) 367, 466
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 3 cut(s) 59, 134, 254
FokI GGATG 2 cut(s) 218, 416
FriOI GRGCYC 1 cut(s) 354
Fsp4HI GCNGC 3 cut(s) 59, 134, 254
GluI GCNGC 3 cut(s) 59, 134, 254
HaeIII GGCC 6 cut(s) 84, 155, 196, 352, 372, 494
Hin1II CATG 2 cut(s) 371, 470
HphI GGTGA 2 cut(s) 238, 442
Hpy166II GTNNAC 3 cut(s) 43, 210, 229
Hpy188I TCNGA 2 cut(s) 23, 503
Hpy188III TCNNGA 1 cut(s) 487
Hpy8I GTNNAC 3 cut(s) 43, 210, 229
HpyAV CCTTC 6 cut(s) 44, 48, 74, 308, 325, 430
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 2 cut(s) 179, 415
HpyF10VI GCNNNNNNNGC 3 cut(s) 202, 343, 358
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 2 cut(s) 371, 470
Kzo9I GATC 2 cut(s) 198, 306
Lsp1109I GCAGC 2 cut(s) 45, 240
LweI GCATC 1 cut(s) 166
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 2 cut(s) 422, 430
MalI GATC 2 cut(s) 200, 308
MboI GATC 2 cut(s) 198, 306
MboII GAAGA 3 cut(s) 26, 109, 259
MhlI GDGCHC 1 cut(s) 354
MlsI TGGCCA 2 cut(s) 372, 494
MluCI AATT 2 cut(s) 356, 456
MluNI TGGCCA 2 cut(s) 372, 494
MnlI CCTC 6 cut(s) 253, 271, 274, 277, 341, 435
Mox20I TGGCCA 2 cut(s) 372, 494
MroXI GAANNNNTTC 1 cut(s) 456
MscI TGGCCA 2 cut(s) 372, 494
Msp20I TGGCCA 2 cut(s) 372, 494
MspR9I CCNGG 4 cut(s) 36, 152, 158, 339
MvaI CCWGG 4 cut(s) 36, 152, 158, 339
MwoI GCNNNNNNNGC 3 cut(s) 202, 343, 358
NdeII GATC 2 cut(s) 198, 306
NlaIII CATG 2 cut(s) 371, 470
NlaIV GGNNCC 4 cut(s) 142, 212, 336, 352
NmuCI GTSAC 2 cut(s) 422, 430
NspI RCATGY 1 cut(s) 470
PdmI GAANNNNTTC 1 cut(s) 456
PflMI CCANNNNNTGG 1 cut(s) 220
PkrI GCNGC 3 cut(s) 60, 135, 255
Ple19I CGATCG 1 cut(s) 201
Psp6I CCWGG 4 cut(s) 34, 150, 156, 337
PspGI CCWGG 4 cut(s) 34, 150, 156, 337
PspN4I GGNNCC 4 cut(s) 142, 212, 336, 352
PspOMI GGGCCC 1 cut(s) 350
PspPI GGNCC 6 cut(s) 141, 154, 194, 210, 350, 351
PvuI CGATCG 1 cut(s) 201
RsaI GTAC 2 cut(s) 125, 165
RsaNI GTAC 2 cut(s) 124, 164
SatI GCNGC 3 cut(s) 59, 134, 254
Sau3AI GATC 2 cut(s) 198, 306
Sau96I GGNCC 6 cut(s) 141, 154, 194, 210, 350, 351
ScrFI CCNGG 4 cut(s) 36, 152, 158, 339
SduI GDGCHC 1 cut(s) 354
SetI ASST 7 cut(s) 132, 255, 288, 336, 380, 393, 432
SfaNI GCATC 1 cut(s) 166
SinI GGWCC 2 cut(s) 141, 210
Sse9I AATT 2 cut(s) 356, 456
SsiI CCGC 2 cut(s) 134, 482
StyD4I CCNGG 4 cut(s) 34, 150, 156, 337
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 1 cut(s) 132
TaqI TCGA 1 cut(s) 381
TasI AATT 2 cut(s) 356, 456
TatI WGTACW 1 cut(s) 163
TauI GCSGC 1 cut(s) 136
TscAI CASTG 2 cut(s) 16, 221
TseFI GTSAC 2 cut(s) 422, 430
TseI GCWGC 2 cut(s) 58, 253
Tsp45I GTSAC 2 cut(s) 422, 430
TspDTI ATGAA 1 cut(s) 423
TspRI CASTG 2 cut(s) 16, 221
Van91I CCANNNNNTGG 1 cut(s) 220
VpaK11BI GGWCC 2 cut(s) 141, 210
XceI RCATGY 1 cut(s) 470
XcmI CCANNNNNNNNNTGG 1 cut(s) 117
XmiI GTMKAC 1 cut(s) 42
XmnI GAANNNNTTC 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.