AT5G01710

Methyltransferase FkbM domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
263511 .. 265633
2123 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G01710.1

Sequence Viewer

Length: 1542 bp
ATGGAGACTTCCATGGGGAAACCCAGCTTCTTACGGAATATAATGGTTCGCGTGCTTCTCTTTGGTGTTCTTATCATCGTTGTGAGATTTGCTTATGTTGTCACCATCACCGGTGAATCATGCAATCGCGGCGACTTCTGCTTCTTCTCTCTCCCTGAGAATCTCAACTTTGTCATCTCCGGTGCTGCCTCCGGCTCTTCTGCTATCGACGCCATCAGATCTACTTCCCCTGGGGATGATCTCTACACCACCAGGGATTGGATCAAATCCGTTCAGTTTTACTCCTCCATCTTCCAGGATCTGATCGCCGACGGTTATCTATCGCCTGAATCGAAGACGCTTTGTGTAGAGACGGCGATTGGACAAGAGGTTCACTCGCTCAGAGAGATTGGGGTGAAGAACTCCGTCGGGATCTCTAAGAAAGCTTCTAGGCCGTTGGTGGTTAGAGGCGAGGGACATGCTATTCCCTTTGAGGATAACGCTTTCGATTTTGTATTCTCCGGTGGTGACCGCCTTGGGAAGTCGTTGAAGCAGTTGGAATTCGCCGATGAGATTACTCGAACACTGAAACCCGAAGGGTTTGCGGTGGTTCATGTTGGGGCTACAGATACGTACAGTTTCAATTCATTCCTTGATTTGTTTAATTCTTGCAGATTGGTGAAGATGCGTGATATCGATGGTTTTGATCCTTCGATGCCTCATATCAGAGAATTTGTTATTCAGAAATACTCAGAGATTGATGGTGGTGGTCATCACCACCGTGGTGGTGGTGATTCTGGTGGAAAGTGCTGGATTCCGGGTTACAAAAGAGATTTGATTCGGGATGCAGAGCCACTGATTCAAGAGGAGCCTCTTAAGCCATGGATTACACTTAAGAGGAACATCAAGAATATTAAATATGTGCCTTCTATGGTTGATATACGTTTCAAGAGTAGATACGTTTACGTTGATGTTGGTGCTAGAAGTTATGGATCCAGTATTGGGAGTTGGTTCAAGAAAGAGTACCCTAAGCAGAACAAAACTTTTGATGTTTTCGCCATTGAGGCTGACAAAGCCTTTCACGAAGAGTATAAGATAAAGAAGAAGGTGAACCTGTTGCCATACGCAGCGTGGGTGAGGAACGAGACGTTATCGTTTGAGATCAATCACGATCCGGGAAAGGAAGTGGAAGCCAAAGCAAAGGGCAGGGGGATGGGCAGAATCCAGCCGGTTAAAAAGTCTGACTCGAGTGACTTAGCTGGAGAGGTGAATTTGATTCAAGGGTTTGATTTCGCTGACTGGTTGAAGAAGAGTGTGAGAGAGAGGGACTTTGTTGTGATGAAGATGGATGTTGAAGGAACCGAATTCGATCTGATCCCGAGGCTAATCAAGACAGGAGCGATTTGTCTAATAGATGAGTTGTTCCTTGAATGCCATTACAACAGGTGGCAGAGATGTTGTCCTGGTCAAAGGAGCCAAAAGTACAACAAGACTTATAACCAATGCTTAGAGCTCTTCAATTCGCTCAGACAAAGAGGGGTGCTTGTCCATCAATGGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

513

Amino Acids

58.29

Weight (kDa)

8.5

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7870 PF25276 277 - 374 5.2e-10 Domain of unknown function (DUF7870)
Methyltransf_21 PF05050 317 - 493 3.5e-06 Methyltransferase FkbM domain
DUF7870 PF25276 419 - 513 1.3e-23 Domain of unknown function (DUF7870)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013085)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1476
AccB7I CCANNNNNTGG 1 cut(s) 258
AccII CGCG 2 cut(s) 51, 129
AciI CCGC 3 cut(s) 129, 511, 584
AclWI GGATC 8 cut(s) 269, 306, 419, 680, 966, 979, 1145, 1348
AcsI RAATTY 4 cut(s) 539, 710, 1249, 1343
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 3 cut(s) 614, 1004, 1463
AfiI CCNNNNNNNGG 2 cut(s) 258, 981
AflII CTTAAG 2 cut(s) 854, 872
AgeI ACCGGT 1 cut(s) 110
AjnI CCWGG 4 cut(s) 229, 251, 294, 1441
AleI CACNNNNGTG 2 cut(s) 759, 762
AloI GAACNNNNNNTCC 2 cut(s) 354, 386
AluBI AGCT 4 cut(s) 27, 425, 1238, 1492
AluI AGCT 4 cut(s) 27, 425, 1238, 1492
Alw21I GWGCWC 1 cut(s) 1494
Alw26I GTCTC 2 cut(s) 344, 1118
AlwI GGATC 8 cut(s) 269, 306, 419, 680, 966, 979, 1145, 1348
AlwNI CAGNNNCTG 1 cut(s) 301
Ama87I CYCGRG 2 cut(s) 1225, 1357
AoxI GGCC 1 cut(s) 431
ApeKI GCWGC 2 cut(s) 185, 1106
ApoI RAATTY 4 cut(s) 539, 710, 1249, 1343
AsiGI ACCGGT 1 cut(s) 110
AsuC2I CCSGG 2 cut(s) 798, 1155
AvaI CYCGRG 2 cut(s) 1225, 1357
BamHI GGATCC 1 cut(s) 971
BanII GRGCYC 1 cut(s) 1494
BbsI GAAGAC 1 cut(s) 341
Bbv12I GWGCWC 1 cut(s) 1494
BbvI GCAGC 2 cut(s) 172, 1118
BccI CCATC 8 cut(s) 113, 221, 296, 671, 734, 1186, 1318, 1536
BceAI ACGGC 2 cut(s) 369, 418
BcgI CGANNNNNNTGC 4 cut(s) 440, 474, 563, 597
BciT130I CCWGG 4 cut(s) 231, 253, 296, 1443
BcnI CCSGG 2 cut(s) 798, 1155
BcoDI GTCTC 2 cut(s) 344, 1118
BfaI CTAG 2 cut(s) 429, 960
BfmI CTRYAG 1 cut(s) 603
BfrI CTTAAG 2 cut(s) 854, 872
BglI GCCNNNNNGGC 1 cut(s) 1043
BglII AGATCT 1 cut(s) 218
BisI GCNGC 3 cut(s) 130, 186, 1107
BlsI GCNGC 3 cut(s) 131, 187, 1108
Bme1390I CCNGG 6 cut(s) 231, 253, 296, 798, 1155, 1443
BmeT110I CYCGRG 2 cut(s) 1225, 1357
BmiI GGNNCC 4 cut(s) 849, 973, 1339, 1454
BmrFI CCNGG 6 cut(s) 231, 253, 296, 798, 1155, 1443
BmsI GCATC 3 cut(s) 654, 684, 814
BpiI GAAGAC 1 cut(s) 341
BplI GAGNNNNNCTC 2 cut(s) 359, 391
BpmI CTGGAG 1 cut(s) 1260
Bpu10I CCTNAGC 1 cut(s) 1008
BpuMI CCSGG 2 cut(s) 798, 1155
Bsa29I ATCGAT 1 cut(s) 675
BsaAI YACGTR 1 cut(s) 612
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 8 cut(s) 12, 229, 230, 252, 514, 760, 860, 1358
BsaWI WCCGGW 3 cut(s) 110, 179, 500
Bsc4I CCNNNNNNNGG 2 cut(s) 258, 981
Bse118I RCCGGY 2 cut(s) 110, 1207
Bse1I ACTGG 2 cut(s) 975, 1283
BseBI CCWGG 4 cut(s) 231, 253, 296, 1443
BseCI ATCGAT 1 cut(s) 675
BseDI CCNNGG 8 cut(s) 12, 229, 230, 252, 514, 760, 860, 1358
BseGI GGATG 4 cut(s) 241, 829, 1197, 1333
BseLI CCNNNNNNNGG 2 cut(s) 258, 981
BseMII CTCAG 4 cut(s) 147, 394, 744, 1519
BseNI ACTGG 2 cut(s) 975, 1283
BseRI GAGGAG 2 cut(s) 274, 860
BseXI GCAGC 2 cut(s) 172, 1118
BseYI CCCAGC 1 cut(s) 23
Bsh1236I CGCG 2 cut(s) 51, 129
BshFI GGCC 1 cut(s) 433
BshTI ACCGGT 1 cut(s) 110
BshVI ATCGAT 1 cut(s) 675
BsiHKAI GWGCWC 1 cut(s) 1494
BsiHKCI CYCGRG 2 cut(s) 1225, 1357
BsiSI CCGG 7 cut(s) 111, 180, 192, 501, 797, 1154, 1208
BslFI GGGAC 2 cut(s) 468, 1319
BslI CCNNNNNNNGG 2 cut(s) 258, 981
BsmAI GTCTC 2 cut(s) 344, 1118
BsmBI CGTCTC 2 cut(s) 344, 1118
BsmFI GGGAC 2 cut(s) 468, 1319
BsmI GAATGC 1 cut(s) 1415
BsnI GGCC 1 cut(s) 433
BsoBI CYCGRG 2 cut(s) 1225, 1357
Bsp1286I GDGCHC 1 cut(s) 1494
Bsp19I CCATGG 2 cut(s) 12, 860
BspACI CCGC 3 cut(s) 129, 511, 584
BspANI GGCC 1 cut(s) 433
BspCNI CTCAG 4 cut(s) 148, 393, 743, 1518
BspDI ATCGAT 1 cut(s) 675
BspFNI CGCG 2 cut(s) 51, 129
BspLI GGNNCC 4 cut(s) 849, 973, 1339, 1454
BspPI GGATC 8 cut(s) 269, 306, 419, 680, 966, 979, 1145, 1348
BspQI GCTCTTC 2 cut(s) 202, 1499
BspTI CTTAAG 2 cut(s) 854, 872
BsrFI RCCGGY 2 cut(s) 110, 1207
BsrI ACTGG 2 cut(s) 975, 1283
BssAI RCCGGY 2 cut(s) 110, 1207
BssECI CCNNGG 8 cut(s) 12, 229, 230, 252, 514, 760, 860, 1358
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 3 cut(s) 12, 514, 860
Bst2UI CCWGG 4 cut(s) 231, 253, 296, 1443
Bst4CI ACNGT 3 cut(s) 314, 617, 761
Bst6I CTCTTC 4 cut(s) 202, 1059, 1283, 1499
BstACI GRCGYC 1 cut(s) 210
BstAFI CTTAAG 2 cut(s) 854, 872
BstBAI YACGTR 1 cut(s) 612
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 8 cut(s) 156, 380, 417, 730, 1008, 1234, 1486, 1505
BstDSI CCRYGG 3 cut(s) 12, 760, 860
BstEII GGTNACC 1 cut(s) 506
BstF5I GGATG 4 cut(s) 241, 829, 1197, 1333
BstFNI CGCG 2 cut(s) 51, 129
BstMAI GTCTC 2 cut(s) 344, 1118
BstMWI GCNNNNNNNGC 6 cut(s) 129, 138, 209, 856, 1043, 1052
BstNI CCWGG 4 cut(s) 231, 253, 296, 1443
BstNSI RCATGY 1 cut(s) 461
BstPI GGTNACC 1 cut(s) 506
BstSCI CCNGG 6 cut(s) 229, 251, 294, 796, 1153, 1441
BstSFI CTRYAG 1 cut(s) 603
BstSNI TACGTA 1 cut(s) 612
BstUI CGCG 2 cut(s) 51, 129
BstV1I GCAGC 2 cut(s) 172, 1118
BstV2I GAAGAC 1 cut(s) 341
BstX2I RGATCY 4 cut(s) 218, 298, 411, 971
BstXI CCANNNNNNTGG 1 cut(s) 764
BstYI RGATCY 4 cut(s) 218, 298, 411, 971
Bsu15I ATCGAT 1 cut(s) 675
BsuRI GGCC 1 cut(s) 433
BsuTUI ATCGAT 1 cut(s) 675
BtgI CCRYGG 3 cut(s) 12, 760, 860
BtsCI GGATG 4 cut(s) 241, 829, 1197, 1333
BtsIMutI CAGTG 2 cut(s) 563, 833
Cac8I GCNNGC 1 cut(s) 53
CaiI CAGNNNCTG 1 cut(s) 301
Cfr10I RCCGGY 2 cut(s) 110, 1207
ClaI ATCGAT 1 cut(s) 675
CseI GACGC 2 cut(s) 218, 346
Csp6I GTAC 3 cut(s) 613, 1003, 1462
CspAI ACCGGT 1 cut(s) 110
CviAII CATG 5 cut(s) 13, 120, 458, 593, 861
CviQI GTAC 3 cut(s) 613, 1003, 1462
DdeI CTNAG 8 cut(s) 156, 380, 417, 730, 1008, 1234, 1486, 1505
Eam1104I CTCTTC 4 cut(s) 202, 1059, 1283, 1499
EarI CTCTTC 4 cut(s) 202, 1059, 1283, 1499
Ecl136II GAGCTC 1 cut(s) 1492
Eco105I TACGTA 1 cut(s) 612
Eco130I CCWWGG 3 cut(s) 12, 514, 860
Eco24I GRGCYC 1 cut(s) 1494
Eco32I GATATC 1 cut(s) 673
Eco53kI GAGCTC 1 cut(s) 1492
Eco88I CYCGRG 2 cut(s) 1225, 1357
Eco91I GGTNACC 1 cut(s) 506
EcoICRI GAGCTC 1 cut(s) 1492
EcoO65I GGTNACC 1 cut(s) 506
EcoRI GAATTC 2 cut(s) 539, 1343
EcoRII CCWGG 4 cut(s) 229, 251, 294, 1441
EcoRV GATATC 1 cut(s) 673
EcoT14I CCWWGG 3 cut(s) 12, 514, 860
EcoT38I GRGCYC 1 cut(s) 1494
ErhI CCWWGG 3 cut(s) 12, 514, 860
Esp3I CGTCTC 2 cut(s) 344, 1118
FaeI CATG 5 cut(s) 16, 123, 461, 596, 864
FaqI GGGAC 2 cut(s) 468, 1319
FatI CATG 5 cut(s) 12, 119, 457, 592, 860
Fnu4HI GCNGC 3 cut(s) 130, 186, 1107
FokI GGATG 4 cut(s) 248, 836, 1204, 1340
FriOI GRGCYC 1 cut(s) 1494
Fsp4HI GCNGC 3 cut(s) 130, 186, 1107
FspBI CTAG 2 cut(s) 429, 960
GluI GCNGC 3 cut(s) 130, 186, 1107
GsaI CCCAGC 1 cut(s) 27
GsuI CTGGAG 1 cut(s) 1260
HaeIII GGCC 1 cut(s) 433
HapII CCGG 7 cut(s) 111, 180, 192, 501, 797, 1154, 1208
HgaI GACGC 2 cut(s) 218, 346
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 5 cut(s) 16, 123, 461, 596, 864
HindIII AAGCTT 1 cut(s) 423
HpaII CCGG 7 cut(s) 111, 180, 192, 501, 797, 1154, 1208
Hpy166II GTNNAC 3 cut(s) 373, 943, 1090
Hpy188I TCNGA 9 cut(s) 218, 303, 383, 707, 723, 733, 1222, 1353, 1508
Hpy8I GTNNAC 3 cut(s) 373, 943, 1090
Hpy99I CGWCG 3 cut(s) 212, 314, 410
HpyAV CCTTC 5 cut(s) 569, 699, 915, 1078, 1328
HpyCH4III ACNGT 3 cut(s) 314, 617, 761
HpyCH4IV ACGT 5 cut(s) 611, 922, 939, 945, 1127
HpyCH4V TGCA 3 cut(s) 123, 651, 827
HpyF10VI GCNNNNNNNGC 6 cut(s) 129, 138, 209, 856, 1043, 1052
HpyF3I CTNAG 8 cut(s) 156, 380, 417, 730, 1008, 1234, 1486, 1505
HpySE526I ACGT 5 cut(s) 611, 922, 939, 945, 1127
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 5 cut(s) 16, 123, 461, 596, 864
LguI GCTCTTC 2 cut(s) 202, 1499
LmnI GCTCC 3 cut(s) 847, 1376, 1452
Lsp1109I GCAGC 2 cut(s) 172, 1118
LweI GCATC 3 cut(s) 654, 684, 814
MaeI CTAG 2 cut(s) 429, 960
MaeII ACGT 5 cut(s) 611, 922, 939, 945, 1127
MaeIII GTNAC 4 cut(s) 100, 506, 800, 1229
MflI RGATCY 4 cut(s) 218, 298, 411, 971
MhlI GDGCHC 1 cut(s) 1494
MluCI AATT 7 cut(s) 539, 622, 643, 710, 1249, 1343, 1498
MlyI GAGTC 1 cut(s) 1217
MmeI TCCRAC 1 cut(s) 516
MseI TTAA 5 cut(s) 642, 855, 873, 894, 1212
MslI CAYNNNNRTG 3 cut(s) 80, 759, 762
MspCI CTTAAG 2 cut(s) 854, 872
MspI CCGG 7 cut(s) 111, 180, 192, 501, 797, 1154, 1208
MspR9I CCNGG 6 cut(s) 231, 253, 296, 798, 1155, 1443
Mva1269I GAATGC 1 cut(s) 1415
MvaI CCWGG 4 cut(s) 231, 253, 296, 1443
MvnI CGCG 2 cut(s) 51, 129
MwoI GCNNNNNNNGC 6 cut(s) 129, 138, 209, 856, 1043, 1052
NciI CCSGG 2 cut(s) 798, 1155
NcoI CCATGG 2 cut(s) 12, 860
NlaIII CATG 5 cut(s) 16, 123, 461, 596, 864
NlaIV GGNNCC 4 cut(s) 849, 973, 1339, 1454
NmuCI GTSAC 3 cut(s) 100, 506, 1229
NspI RCATGY 1 cut(s) 461
OliI CACNNNNGTG 2 cut(s) 759, 762
PaeR7I CTCGAG 1 cut(s) 1225
PasI CCCWGGG 1 cut(s) 230
PciSI GCTCTTC 2 cut(s) 202, 1499
PcsI WCGNNNNNNNCGW 1 cut(s) 329
PctI GAATGC 1 cut(s) 1415
PfeI GAWTC 9 cut(s) 116, 160, 329, 773, 793, 817, 838, 1200, 1255
PflMI CCANNNNNTGG 1 cut(s) 258
PfoI TCCNGGA 2 cut(s) 294, 1153
PinAI ACCGGT 1 cut(s) 110
PkrI GCNGC 3 cut(s) 131, 187, 1108
PleI GAGTC 1 cut(s) 1217
PpsI GAGTC 1 cut(s) 1217
Ppu21I YACGTR 1 cut(s) 612
PsiI TTATAA 1 cut(s) 1476
Psp124BI GAGCTC 1 cut(s) 1494
Psp6I CCWGG 4 cut(s) 229, 251, 294, 1441
PspEI GGTNACC 1 cut(s) 506
PspFI CCCAGC 1 cut(s) 23
PspGI CCWGG 4 cut(s) 229, 251, 294, 1441
PspN4I GGNNCC 4 cut(s) 849, 973, 1339, 1454
PspXI VCTCGAGB 1 cut(s) 1225
PstNI CAGNNNCTG 1 cut(s) 301
PsuI RGATCY 4 cut(s) 218, 298, 411, 971
RsaI GTAC 3 cut(s) 614, 1004, 1463
RsaNI GTAC 3 cut(s) 613, 1003, 1462
RseI CAYNNNNRTG 3 cut(s) 80, 759, 762
SacI GAGCTC 1 cut(s) 1494
SapI GCTCTTC 2 cut(s) 202, 1499
SaqAI TTAA 5 cut(s) 642, 855, 873, 894, 1212
SatI GCNGC 3 cut(s) 130, 186, 1107
SchI GAGTC 1 cut(s) 1217
ScrFI CCNGG 6 cut(s) 231, 253, 296, 798, 1155, 1443
SduI GDGCHC 1 cut(s) 1494
SfaNI GCATC 3 cut(s) 654, 684, 814
SfcI CTRYAG 1 cut(s) 603
Sfr274I CTCGAG 1 cut(s) 1225
SgrAI CRCCGGYG 1 cut(s) 110
SlaI CTCGAG 1 cut(s) 1225
SmiMI CAYNNNNRTG 3 cut(s) 80, 759, 762
SmlI CTYRAG 3 cut(s) 854, 872, 1225
SmoI CTYRAG 3 cut(s) 854, 872, 1225
SnaBI TACGTA 1 cut(s) 612
Sse9I AATT 7 cut(s) 539, 622, 643, 710, 1249, 1343, 1498
SsiI CCGC 3 cut(s) 129, 511, 584
SspI AATATT 1 cut(s) 892
SspMI CTAG 2 cut(s) 429, 960
SstI GAGCTC 1 cut(s) 1494
StyD4I CCNGG 6 cut(s) 229, 251, 294, 796, 1153, 1441
StyI CCWWGG 3 cut(s) 12, 514, 860
TaaI ACNGT 3 cut(s) 314, 617, 761
TaiI ACGT 5 cut(s) 614, 925, 942, 948, 1130
TaqI TCGA 8 cut(s) 207, 332, 486, 559, 675, 692, 1226, 1347
TasI AATT 7 cut(s) 539, 622, 643, 710, 1249, 1343, 1498
TatI WGTACW 1 cut(s) 1461
TauI GCSGC 1 cut(s) 132
TfiI GAWTC 9 cut(s) 116, 160, 329, 773, 793, 817, 838, 1200, 1255
Tru1I TTAA 5 cut(s) 642, 855, 873, 894, 1212
Tru9I TTAA 5 cut(s) 642, 855, 873, 894, 1212
TscAI CASTG 2 cut(s) 570, 840
TseFI GTSAC 3 cut(s) 100, 506, 1229
TseI GCWGC 2 cut(s) 185, 1106
Tsp45I GTSAC 3 cut(s) 100, 506, 1229
TspDTI ATGAA 3 cut(s) 581, 615, 1334
TspGWI ACGGA 3 cut(s) 49, 259, 394
TspRI CASTG 2 cut(s) 570, 840
Van91I CCANNNNNTGG 1 cut(s) 258
Vha464I CTTAAG 2 cut(s) 854, 872
XapI RAATTY 4 cut(s) 539, 710, 1249, 1343
XceI RCATGY 1 cut(s) 461
XcmI CCANNNNNNNNNTGG 2 cut(s) 764, 1107
XhoI CTCGAG 1 cut(s) 1225
XspI CTAG 2 cut(s) 429, 960
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.