FvH4_6g10540

Methyltransferase FkbM domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
6320216 .. 6322327
2112 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10540.t1

Sequence Viewer

Length: 1536 bp
ATGGAGCCTATTACTGCGAAGCCGGGGTTCCTCAAGAACACTCTGGTGCGGTGTTTCTTGTTCGGCGTTGTGCTGGTGCTGTTCCGGTTCGCTTACGTCATCACCGTGACCGGAGAGTCGTGTAGAGTTGGAAATTTCTGCTTCCTGAAAGAGAATCTCAACTTCGTCATCCCCGGCAGCGGCGCGTCGGCGGCGGTGGCGGCGAACGGCGCGGTTTCGACCGGTGCGGTGGGGCCGGAGAGGAAGGACGTGTACACCAGCAAGGACTGGATCAAGGCCGTCCATTTTTACTCCGCCGTTTTCCAAGATCTGATCTCGCAAGGGTTTCTCTCGCCGGAATCGAAGTCCTTGTGCGTGGAGACTCCGACGGGGCAGGAAGTTTACGCCTTGAAGGAGACCGGCGTGAAGAACGCCGTCGGGATTTTCAAGAAGGCGTCGAGGCCGTTGGTGGTTCGCGGCGAGGCGCACCGGATGCCGTTCGCCGATAACTCGTTCGACTTCGTTTTCTCCGGCAACGGGAGGCTGGACAAGTCGCCGAAGGCGGCGGAGTTCGCGGCGGAGATTGTTAGGACGCTCAGGCCCGAAGGGTTTGCGGTGGTCCATATCGGAGCCAAAGATACGTATAGCTTCCATTCTTTTATTGATTTGTTCAGTTGCTGTAAGTTAGTTACTTCACGCGACATCGACGGCTTTAATTCGTCGATGCCGCATATACGTGAGATGGTGTTGAAAAAGGAGTGTGATGCTTCTACTGAAGTGTCAAATTCCGGCGGAAGTTCCGGTAATGAGTGCTCGGTGCCGGGGCATAAGCTTGAGTTGGTGAGGAAGGCCGAGCCGATTATTCAAATCGAGCCGTTGAAGCCGTGGATTACATTGAAGAAGAATATACAGAATGTGAAGTATCTCCCTTCGATTGTGGATATTAGCTTTAAGAGGAGGTATGTTTATGTTGATGTTGGAGCTAGGAGCTATGGTTCGAGTATTGGGAGCTGGTTCAAGAAGCAGTACCCGAAGCAGAACAAGACTTTTGAAGTTTTCGCCATTGAGGCTGATAAGACTTTTCATGAGCAGTATAAGATGAAGAAGAGGATTACTTTGCTGCCGTATGCGGCGTGGGTGAGGAATGAGACATTGTCGTTTGAGATTAATGGAGACCCCGGGGAGAAGGTGAAGGAGAAGGGTAGGGGAATGGGGAGGATTCAGCCGGGGAAGTCGGCCAATGGAGGGTTTGATGGTCAGGTGGATAGGATTCAAGGGTTTGATTTTGCGGAGTGGGTGAAGAATACTTTCACAGAGAAGGATTTCGTGGTGATGAAGATGGATGTGGAAGGGACGGAATTTGATTTGATTCCGAGGCTGTTTGAGACCGGGGCAATTTGTTTGATCGATGAGGTGTTTCTTGAATGCCATTACAATAGGTGGCAGAGGACGCTCCCTGGTGAGAGGAGTGCAAAGTATGAGAAAACTTATGGCCAGTGCTTGGACTTGTTCACTTCTCTAAGGCAAAGTGGGGTTCTTGTTCATCAGTGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

512

Amino Acids

57.33

Weight (kDa)

8.83

Isoelectric Point (pI)

34.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_11 PF08241 147 - 199 1.4e-07 Methyltransferase domain
DUF7870 PF25276 285 - 374 1.4e-10 Domain of unknown function (DUF7870)
Methyltransf_21 PF05050 318 - 473 9.2e-06 Methyltransferase FkbM domain
DUF7870 PF25276 417 - 511 1.1e-19 Domain of unknown function (DUF7870)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013085)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 115
AccB1I GGYRCC 1 cut(s) 796
AccB7I CCANNNNNTGG 1 cut(s) 1480
AccII CGCG 5 cut(s) 185, 212, 456, 554, 678
AclWI GGATC 1 cut(s) 278
AcoI YGGCCR 2 cut(s) 1215, 1471
AcsI RAATTY 3 cut(s) 133, 763, 1337
AcuI CTGAAG 1 cut(s) 774
AcyI GRCGYC 1 cut(s) 434
AfaI GTAC 2 cut(s) 254, 1007
AfiI CCNNNNNNNGG 4 cut(s) 179, 516, 1224, 1480
AflIII ACRYGT 1 cut(s) 249
AgeI ACCGGT 1 cut(s) 221
AjiI CACGTC 1 cut(s) 250
AjnI CCWGG 1 cut(s) 1435
AleI CACNNNNGTG 1 cut(s) 44
AloI GAACNNNNNNTCC 2 cut(s) 958, 990
AluBI AGCT 6 cut(s) 627, 811, 927, 962, 969, 990
AluI AGCT 6 cut(s) 627, 811, 927, 962, 969, 990
Alw21I GWGCWC 1 cut(s) 794
Alw26I GTCTC 5 cut(s) 353, 389, 1121, 1146, 1358
AlwI GGATC 1 cut(s) 278
AlwNI CAGNNNCTG 1 cut(s) 657
Ama87I CYCGRG 1 cut(s) 1157
AoxI GGCC 7 cut(s) 233, 276, 440, 578, 828, 1215, 1471
ApeKI GCWGC 2 cut(s) 177, 1099
ApoI RAATTY 3 cut(s) 133, 763, 1337
AseI ATTAAT 1 cut(s) 1146
AsiGI ACCGGT 1 cut(s) 221
Asp700I GAANNNNTTC 2 cut(s) 1286, 1301
AspLEI GCGC 3 cut(s) 185, 212, 466
AspS9I GGNCC 3 cut(s) 233, 579, 598
AsuC2I CCSGG 7 cut(s) 24, 174, 801, 1158, 1159, 1206, 1369
AsuHPI GGTGA 7 cut(s) 94, 832, 1129, 1180, 1288, 1321, 1451
AvaI CYCGRG 1 cut(s) 1157
AvaII GGWCC 1 cut(s) 598
BalI TGGCCA 1 cut(s) 1473
BanI GGYRCC 1 cut(s) 796
BarI GAAGNNNNNNTAC 2 cut(s) 236, 268
Bbv12I GWGCWC 1 cut(s) 794
BbvI GCAGC 2 cut(s) 189, 1086
BccI CCATC 3 cut(s) 715, 1226, 1312
BcgI CGANNNNNNTGC 2 cut(s) 572, 606
BciT130I CCWGG 1 cut(s) 1437
BcnI CCSGG 7 cut(s) 24, 174, 801, 1158, 1159, 1206, 1369
BcoDI GTCTC 5 cut(s) 353, 389, 1121, 1146, 1358
BfaI CTAG 1 cut(s) 963
BglI GCCNNNNNGGC 1 cut(s) 1046
BglII AGATCT 1 cut(s) 307
Bme1390I CCNGG 8 cut(s) 24, 174, 801, 1158, 1159, 1206, 1369, 1437
Bme18I GGWCC 1 cut(s) 598
BmeT110I CYCGRG 1 cut(s) 1157
BmgBI CACGTC 1 cut(s) 250
BmgT120I GGNCC 3 cut(s) 233, 579, 598
BmiI GGNNCC 5 cut(s) 6, 29, 234, 610, 798
BmrFI CCNGG 8 cut(s) 24, 174, 801, 1158, 1159, 1206, 1369, 1437
BmsI GCATC 3 cut(s) 462, 693, 733
Bpu10I CCTNAGC 1 cut(s) 575
BpuEI CTTGAG 2 cut(s) 17, 833
BpuMI CCSGG 7 cut(s) 24, 174, 801, 1158, 1159, 1206, 1369
Bsa29I ATCGAT 1 cut(s) 1386
BsaAI YACGTR 2 cut(s) 621, 716
BsaHI GRCGYC 1 cut(s) 434
BsaI GGTCTC 3 cut(s) 389, 1146, 1358
BsaWI WCCGGW 5 cut(s) 84, 110, 221, 468, 779
BsaXI ACNNNNNCTCC 2 cut(s) 958, 988
Bsc4I CCNNNNNNNGG 4 cut(s) 179, 516, 1224, 1480
Bse118I RCCGGY 2 cut(s) 221, 398
Bse1I ACTGG 2 cut(s) 272, 1474
BseBI CCWGG 1 cut(s) 1437
BseCI ATCGAT 1 cut(s) 1386
BseGI GGATG 3 cut(s) 168, 477, 1327
BseLI CCNNNNNNNGG 4 cut(s) 179, 516, 1224, 1480
BseMII CTCAG 1 cut(s) 589
BseNI ACTGG 2 cut(s) 272, 1474
BseRI GAGGAG 2 cut(s) 949, 1459
BseXI GCAGC 2 cut(s) 189, 1086
Bsh1236I CGCG 5 cut(s) 185, 212, 456, 554, 678
Bsh1285I CGRYCG 1 cut(s) 222
BshFI GGCC 7 cut(s) 235, 278, 442, 580, 830, 1217, 1473
BshNI GGYRCC 1 cut(s) 796
BshTI ACCGGT 1 cut(s) 221
BshVI ATCGAT 1 cut(s) 1386
BsiEI CGRYCG 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 794
BsiHKCI CYCGRG 1 cut(s) 1157
BslFI GGGAC 1 cut(s) 1345
BslI CCNNNNNNNGG 4 cut(s) 179, 516, 1224, 1480
BsmAI GTCTC 5 cut(s) 353, 389, 1121, 1146, 1358
BsmFI GGGAC 1 cut(s) 1345
BsmI GAATGC 1 cut(s) 1409
BsnI GGCC 7 cut(s) 235, 278, 442, 580, 830, 1217, 1473
Bso31I GGTCTC 3 cut(s) 389, 1146, 1358
BsoBI CYCGRG 1 cut(s) 1157
Bsp1286I GDGCHC 1 cut(s) 794
Bsp1407I TGTACA 1 cut(s) 252
Bsp143I GATC 4 cut(s) 270, 307, 312, 1383
BspANI GGCC 7 cut(s) 235, 278, 442, 580, 830, 1217, 1473
BspCNI CTCAG 1 cut(s) 588
BspDI ATCGAT 1 cut(s) 1386
BspFNI CGCG 5 cut(s) 185, 212, 456, 554, 678
BspHI TCATGA 1 cut(s) 1063
BspLI GGNNCC 5 cut(s) 6, 29, 234, 610, 798
BspPI GGATC 1 cut(s) 278
BspT107I GGYRCC 1 cut(s) 796
BspTNI GGTCTC 3 cut(s) 389, 1146, 1358
BsrFI RCCGGY 2 cut(s) 221, 398
BsrGI TGTACA 1 cut(s) 252
BsrI ACTGG 2 cut(s) 272, 1474
BssAI RCCGGY 2 cut(s) 221, 398
BssMI GATC 4 cut(s) 270, 307, 312, 1383
BssNI GRCGYC 1 cut(s) 434
Bst2UI CCWGG 1 cut(s) 1437
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 1 cut(s) 1079
BstACI GRCGYC 1 cut(s) 434
BstAPI GCANNNNNTGC 1 cut(s) 472
BstAUI TGTACA 1 cut(s) 252
BstBAI YACGTR 2 cut(s) 621, 716
BstDEI CTNAG 2 cut(s) 575, 1499
BstDSI CCRYGG 1 cut(s) 863
BstF5I GGATG 3 cut(s) 168, 477, 1327
BstFNI CGCG 5 cut(s) 185, 212, 456, 554, 678
BstHHI GCGC 3 cut(s) 185, 212, 466
BstKTI GATC 4 cut(s) 273, 310, 315, 1386
BstMAI GTCTC 5 cut(s) 353, 389, 1121, 1146, 1358
BstMBI GATC 4 cut(s) 270, 307, 312, 1383
BstMCI CGRYCG 1 cut(s) 222
BstMWI GCNNNNNNNGC 9 cut(s) 191, 197, 200, 209, 472, 551, 859, 1046, 1429
BstNI CCWGG 1 cut(s) 1437
BstSCI CCNGG 8 cut(s) 22, 172, 799, 1156, 1157, 1204, 1367, 1435
BstSNI TACGTA 1 cut(s) 621
BstUI CGCG 5 cut(s) 185, 212, 456, 554, 678
BstV1I GCAGC 2 cut(s) 189, 1086
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
Bsu15I ATCGAT 1 cut(s) 1386
BsuRI GGCC 7 cut(s) 235, 278, 442, 580, 830, 1217, 1473
BsuTUI ATCGAT 1 cut(s) 1386
BtgI CCRYGG 1 cut(s) 863
BtrI CACGTC 1 cut(s) 250
BtsCI GGATG 3 cut(s) 168, 477, 1327
BtsIMutI CAGTG 2 cut(s) 1481, 1532
CaiI CAGNNNCTG 1 cut(s) 657
CciI TCATGA 1 cut(s) 1063
CfoI GCGC 3 cut(s) 185, 212, 466
Cfr10I RCCGGY 2 cut(s) 221, 398
Cfr13I GGNCC 3 cut(s) 233, 579, 598
Cfr9I CCCGGG 1 cut(s) 1157
ClaI ATCGAT 1 cut(s) 1386
CseI GACGC 4 cut(s) 174, 423, 580, 1438
Csp6I GTAC 2 cut(s) 253, 1006
CspAI ACCGGT 1 cut(s) 221
CviAII CATG 1 cut(s) 1064
CviQI GTAC 2 cut(s) 253, 1006
DdeI CTNAG 2 cut(s) 575, 1499
DpnI GATC 4 cut(s) 272, 309, 314, 1385
DpnII GATC 4 cut(s) 270, 307, 312, 1383
DrdI GACNNNNNNGTC 1 cut(s) 115
DseDI GACNNNNNNGTC 1 cut(s) 115
EaeI YGGCCR 2 cut(s) 1215, 1471
Eam1104I CTCTTC 1 cut(s) 1079
EarI CTCTTC 1 cut(s) 1079
EciI GGCGGA 4 cut(s) 283, 560, 572, 786
Eco105I TACGTA 1 cut(s) 621
Eco31I GGTCTC 3 cut(s) 389, 1146, 1358
Eco47I GGWCC 1 cut(s) 598
Eco57I CTGAAG 1 cut(s) 774
Eco88I CYCGRG 1 cut(s) 1157
EcoRII CCWGG 1 cut(s) 1435
FaeI CATG 1 cut(s) 1067
FaqI GGGAC 1 cut(s) 1345
FatI CATG 1 cut(s) 1063
FokI GGATG 3 cut(s) 155, 484, 1334
FspBI CTAG 1 cut(s) 963
GlaI GCGC 3 cut(s) 184, 211, 465
HaeIII GGCC 7 cut(s) 235, 278, 442, 580, 830, 1217, 1473
HgaI GACGC 4 cut(s) 174, 423, 580, 1438
HhaI GCGC 3 cut(s) 185, 212, 466
Hin1I GRCGYC 1 cut(s) 434
Hin1II CATG 1 cut(s) 1067
Hin6I GCGC 3 cut(s) 183, 210, 464
HinP1I GCGC 3 cut(s) 183, 210, 464
HindIII AAGCTT 1 cut(s) 809
HinfI GANTC 7 cut(s) 116, 154, 338, 361, 1198, 1249, 1348
HphI GGTGA 7 cut(s) 94, 832, 1129, 1180, 1288, 1321, 1451
Hpy166II GTNNAC 4 cut(s) 253, 255, 382, 1491
Hpy188I TCNGA 4 cut(s) 312, 366, 608, 1353
Hpy188III TCNNGA 7 cut(s) 34, 145, 418, 427, 997, 1064, 1400
Hpy8I GTNNAC 4 cut(s) 253, 255, 382, 1491
Hpy99I CGWCG 6 cut(s) 190, 370, 419, 439, 689, 703
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 4 cut(s) 96, 249, 620, 715
HpyCH4V TGCA 1 cut(s) 1451
HpyF10VI GCNNNNNNNGC 9 cut(s) 191, 197, 200, 209, 472, 551, 859, 1046, 1429
HpyF3I CTNAG 2 cut(s) 575, 1499
HpySE526I ACGT 4 cut(s) 96, 249, 620, 715
Hsp92I GRCGYC 1 cut(s) 434
Hsp92II CATG 1 cut(s) 1067
HspAI GCGC 3 cut(s) 183, 210, 464
Kzo9I GATC 4 cut(s) 270, 307, 312, 1383
LmnI GCTCC 6 cut(s) 4, 608, 959, 966, 987, 1437
Lsp1109I GCAGC 2 cut(s) 189, 1086
LweI GCATC 3 cut(s) 462, 693, 733
MaeI CTAG 1 cut(s) 963
MaeII ACGT 4 cut(s) 96, 249, 620, 715
MaeIII GTNAC 2 cut(s) 106, 667
MalI GATC 4 cut(s) 272, 309, 314, 1385
MboI GATC 4 cut(s) 270, 307, 312, 1383
MboII GAAGA 7 cut(s) 418, 889, 892, 1093, 1096, 1291, 1327
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 794
MlsI TGGCCA 1 cut(s) 1473
MluCI AATT 5 cut(s) 133, 694, 763, 1337, 1374
MluNI TGGCCA 1 cut(s) 1473
MlyI GAGTC 2 cut(s) 125, 355
MmeI TCCRAC 3 cut(s) 109, 389, 937
Mox20I TGGCCA 1 cut(s) 1473
MroXI GAANNNNTTC 2 cut(s) 1286, 1301
MscI TGGCCA 1 cut(s) 1473
MseI TTAA 3 cut(s) 693, 930, 1146
MslI CAYNNNNRTG 3 cut(s) 44, 104, 714
Msp20I TGGCCA 1 cut(s) 1473
MspA1I CMGCKG 1 cut(s) 180
MspR9I CCNGG 8 cut(s) 24, 174, 801, 1158, 1159, 1206, 1369, 1437
Mva1269I GAATGC 1 cut(s) 1409
MvaI CCWGG 1 cut(s) 1437
MvnI CGCG 5 cut(s) 185, 212, 456, 554, 678
MwoI GCNNNNNNNGC 9 cut(s) 191, 197, 200, 209, 472, 551, 859, 1046, 1429
NciI CCSGG 7 cut(s) 24, 174, 801, 1158, 1159, 1206, 1369
NdeII GATC 4 cut(s) 270, 307, 312, 1383
NlaIII CATG 1 cut(s) 1067
NlaIV GGNNCC 5 cut(s) 6, 29, 234, 610, 798
NmeAIII GCCGAG 1 cut(s) 856
NmuCI GTSAC 1 cut(s) 106
OliI CACNNNNGTG 1 cut(s) 44
PagI TCATGA 1 cut(s) 1063
PcsI WCGNNNNNNNCGW 2 cut(s) 102, 338
PctI GAATGC 1 cut(s) 1409
PdmI GAANNNNTTC 2 cut(s) 1286, 1301
PfeI GAWTC 5 cut(s) 154, 338, 1198, 1249, 1348
PflFI GACNNNGTC 1 cut(s) 1132
PflMI CCANNNNNTGG 1 cut(s) 1480
PinAI ACCGGT 1 cut(s) 221
PleI GAGTC 2 cut(s) 124, 355
PpsI GAGTC 2 cut(s) 124, 355
Ppu21I YACGTR 2 cut(s) 621, 716
PshBI ATTAAT 1 cut(s) 1146
Psp6I CCWGG 1 cut(s) 1435
PspGI CCWGG 1 cut(s) 1435
PspN4I GGNNCC 5 cut(s) 6, 29, 234, 610, 798
PspPI GGNCC 3 cut(s) 233, 579, 598
PstNI CAGNNNCTG 1 cut(s) 657
PsuI RGATCY 1 cut(s) 307
PsyI GACNNNGTC 1 cut(s) 1132
RsaI GTAC 2 cut(s) 254, 1007
RsaNI GTAC 2 cut(s) 253, 1006
RseI CAYNNNNRTG 3 cut(s) 44, 104, 714
SaqAI TTAA 3 cut(s) 693, 930, 1146
Sau3AI GATC 4 cut(s) 270, 307, 312, 1383
Sau96I GGNCC 3 cut(s) 233, 579, 598
SchI GAGTC 2 cut(s) 125, 355
ScrFI CCNGG 8 cut(s) 24, 174, 801, 1158, 1159, 1206, 1369, 1437
SduI GDGCHC 1 cut(s) 794
SfaNI GCATC 3 cut(s) 462, 693, 733
SinI GGWCC 1 cut(s) 598
SmaI CCCGGG 1 cut(s) 1159
SmiMI CAYNNNNRTG 3 cut(s) 44, 104, 714
SmlI CTYRAG 2 cut(s) 32, 812
SmoI CTYRAG 2 cut(s) 32, 812
SnaBI TACGTA 1 cut(s) 621
Sse9I AATT 5 cut(s) 133, 694, 763, 1337, 1374
SspMI CTAG 1 cut(s) 963
StyD4I CCNGG 8 cut(s) 22, 172, 799, 1156, 1157, 1204, 1367, 1435
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 4 cut(s) 99, 252, 623, 718
TasI AATT 5 cut(s) 133, 694, 763, 1337, 1374
TatI WGTACW 1 cut(s) 252
TauI GCSGC 8 cut(s) 183, 194, 203, 459, 545, 557, 709, 1112
TfiI GAWTC 5 cut(s) 154, 338, 1198, 1249, 1348
Tru1I TTAA 3 cut(s) 693, 930, 1146
Tru9I TTAA 3 cut(s) 693, 930, 1146
TscAI CASTG 2 cut(s) 1481, 1532
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 2 cut(s) 177, 1099
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 4 cut(s) 1052, 1094, 1328, 1511
TspGWI ACGGA 1 cut(s) 1349
TspMI CCCGGG 1 cut(s) 1157
TspRI CASTG 2 cut(s) 1481, 1532
Tth111I GACNNNGTC 1 cut(s) 1132
Van91I CCANNNNNTGG 1 cut(s) 1480
VpaK11BI GGWCC 1 cut(s) 598
VspI ATTAAT 1 cut(s) 1146
XapI RAATTY 3 cut(s) 133, 763, 1337
XmaI CCCGGG 1 cut(s) 1157
XmnI GAANNNNTTC 2 cut(s) 1286, 1301
XspI CTAG 1 cut(s) 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.