Rorug03G0051300

Methyltransferase FkbM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0013085
Physical Location & Seq
Forward (+)
4014508 .. 4016839
2332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0051300.1

Sequence Viewer

Length: 927 bp
ATGCATGGGAGACCATCTTCTTCGTCTTCTACGTCTTCGTCTTCTTGTTCTCTACAACCATGTCTCCCGAAACGGATAATCCTAATGCGTCACGCCGAATCCCAAGGCAATCTGGACATGGCGGCCTACACGACCACCCCGGACAACAAAATCCCGCTCACCGAACAGGGCCTGGCCCAGGCCCAGCTCGCCGGGGCCCAACTCCGCCGCGTCGTCTCCGCCGACAACGACTCCAACCACCCCGAGTGGCGCGTCTACTTCTACGTCTCCCCTTACGAGCGCACCCGCTCCACGCTCTCCCAGATCGGACGGTCCTTCTCCCGGACACGTGTCATCGGCGTCCGCGAGGAGTGCCGGATAAGGGAGCAGGATTTCGGGAATTTTCAGGTGGAGGAGAGAATGAAGGCCATTAAGCAGACCAGGGAGAAGTTCGGCAGATTCTTCTATCGGTTTCCGGAGGGGGAGTCCGCCGCTGATGTTTACGATCGTGTTTCCAGTTTTCTTGAATCTTTATGGAGGGACATAGACATGAACAGGCTTCGCCACAACCCTTGTCATGACCTTAATCTTGTAATTGTATCACATGGGTTAACATCGCGTGTCTTCCTCATGAAGTGGTTCAAGTGGACGGTAGAGCAATTCGAGCACCTAAACAACTTTGGAAACTGTGAATTTCGAGTGATGCAATTAGGAGCTGGCGGAGAGTATAGCTTAGCAGTCCATCACACAGAGGAAGAGCTAATAGAATGGGGTCTTTCACCTGAAATGATAGCTGACCAAAAGTGGCGAGCCCATTCTGGCAAGGGTTGGACTGACCGTTGCCCCTGGTTCATTGATTCATTCTTTGACAAGCTAGCCGACTCTGATGATACAGACAATGACGACGTTTGGCATGAAACCAATGACAAAGTTCAGCAATCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11 Methyltransf_21

Protein Analysis

308

Amino Acids

35.73

Weight (kDa)

5.9

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 26 - 235 2.7e-26 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013085)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01710
fragaria_vesca FvH4_6g10540
malus_domestica MD04G1167500.v1.1 MD12G1180800.v1.1
prunus_persica Prupe.6G285700_v2.0.a1
pyrus_communis pycom04g14860 pycom12g17040
rosa_chinensis RchiOBHm_Chr3g0461501
rosa_laevigata RLG00000024927
rosa_multiflora Rmu_sc0002677.1_g000002
rosa_roxburghii Rroxscaffold_6G00418230 Rroxscaffold_6G00418560
rosa_rugosa Rorug03G0051300
rosa_samantha Rh3AG109100 Rh3BG112900 Rh3CG114400 Rh3DG114500
rosa_wichuraiana Rw3G009270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 157, 288
AccI GTMKAC 1 cut(s) 255
AccII CGCG 4 cut(s) 210, 252, 345, 598
AccIII TCCGGA 1 cut(s) 454
AcsI RAATTY 2 cut(s) 379, 671
AcvI CACGTG 1 cut(s) 329
AcyI GRCGYC 1 cut(s) 339
AfiI CCNNNNNNNGG 3 cut(s) 178, 321, 361
AflIII ACRYGT 2 cut(s) 326, 328
AgsI TTSAA 2 cut(s) 506, 622
AjnI CCWGG 4 cut(s) 171, 177, 419, 824
AluBI AGCT 6 cut(s) 187, 695, 711, 739, 773, 853
AluI AGCT 6 cut(s) 187, 695, 711, 739, 773, 853
Alw21I GWGCWC 1 cut(s) 648
Alw26I GTCTC 4 cut(s) 4, 68, 220, 271
AlwNI CAGNNNCTG 1 cut(s) 172
Ama87I CYCGRG 1 cut(s) 242
Aor13HI TCCGGA 1 cut(s) 454
AoxI GGCC 6 cut(s) 123, 169, 174, 180, 195, 405
ApaI GGGCCC 1 cut(s) 199
ApoI RAATTY 2 cut(s) 379, 671
Asp700I GAANNNNTTC 1 cut(s) 617
AspLEI GCGC 2 cut(s) 252, 282
AspS9I GGNCC 6 cut(s) 169, 175, 181, 195, 196, 312
AsuC2I CCSGG 3 cut(s) 140, 193, 322
AsuHPI GGTGA 2 cut(s) 151, 750
AsuNHI GCTAGC 1 cut(s) 853
AvaI CYCGRG 1 cut(s) 242
AvaII GGWCC 1 cut(s) 312
BaeGI GKGCMC 1 cut(s) 199
BanII GRGCYC 2 cut(s) 199, 793
BbrPI CACGTG 1 cut(s) 329
BbsI GAAGAC 4 cut(s) 18, 27, 33, 595
Bbv12I GWGCWC 1 cut(s) 648
BccI CCATC 2 cut(s) 22, 729
BciT130I CCWGG 4 cut(s) 173, 179, 421, 826
BcnI CCSGG 3 cut(s) 140, 193, 322
BcoDI GTCTC 4 cut(s) 4, 68, 220, 271
BfaI CTAG 1 cut(s) 854
BisI GCNGC 3 cut(s) 123, 208, 471
BlpI GCTNAGC 1 cut(s) 712
BlsI GCNGC 3 cut(s) 124, 209, 472
Bme1390I CCNGG 7 cut(s) 140, 173, 179, 193, 322, 421, 826
Bme18I GGWCC 1 cut(s) 312
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 6 cut(s) 169, 175, 181, 195, 196, 312
BmiI GGNNCC 2 cut(s) 196, 197
BmrFI CCNGG 7 cut(s) 140, 173, 179, 193, 322, 421, 826
BmsI GCATC 1 cut(s) 672
BmtI GCTAGC 1 cut(s) 857
BoxI GACNNNNGTC 1 cut(s) 329
BpiI GAAGAC 4 cut(s) 18, 27, 33, 595
Bpu1102I GCTNAGC 1 cut(s) 712
BpuMI CCSGG 3 cut(s) 140, 193, 322
BsaAI YACGTR 1 cut(s) 329
BsaHI GRCGYC 1 cut(s) 339
BsaI GGTCTC 1 cut(s) 4
BsaJI CCNNGG 6 cut(s) 103, 138, 177, 192, 420, 824
BsaWI WCCGGW 1 cut(s) 454
BsaXI ACNNNNNCTCC 6 cut(s) 48, 78, 215, 245, 449, 479
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 321, 361
Bse1I ACTGG 1 cut(s) 495
BseAI TCCGGA 1 cut(s) 454
BseBI CCWGG 4 cut(s) 173, 179, 421, 826
BseDI CCNNGG 6 cut(s) 103, 138, 177, 192, 420, 824
BseLI CCNNNNNNNGG 3 cut(s) 178, 321, 361
BseNI ACTGG 1 cut(s) 495
BseRI GAGGAG 2 cut(s) 362, 407
BseSI GKGCMC 1 cut(s) 199
BseYI CCCAGC 1 cut(s) 183
Bsh1236I CGCG 4 cut(s) 210, 252, 345, 598
Bsh1285I CGRYCG 1 cut(s) 487
BshFI GGCC 6 cut(s) 125, 171, 176, 182, 197, 407
BsiEI CGRYCG 1 cut(s) 487
BsiHKAI GWGCWC 1 cut(s) 648
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 5 cut(s) 140, 192, 322, 355, 455
BslFI GGGAC 1 cut(s) 533
BslI CCNNNNNNNGG 3 cut(s) 178, 321, 361
BsmAI GTCTC 4 cut(s) 4, 68, 220, 271
BsmBI CGTCTC 2 cut(s) 220, 271
BsmFI GGGAC 1 cut(s) 533
BsnI GGCC 6 cut(s) 125, 171, 176, 182, 197, 407
Bso31I GGTCTC 1 cut(s) 4
BsoBI CYCGRG 1 cut(s) 242
Bsp120I GGGCCC 1 cut(s) 195
Bsp1286I GDGCHC 3 cut(s) 199, 648, 793
Bsp13I TCCGGA 1 cut(s) 454
Bsp143I GATC 2 cut(s) 303, 484
Bsp1720I GCTNAGC 1 cut(s) 712
BspANI GGCC 6 cut(s) 125, 171, 176, 182, 197, 407
BspEI TCCGGA 1 cut(s) 454
BspFNI CGCG 4 cut(s) 210, 252, 345, 598
BspHI TCATGA 2 cut(s) 556, 609
BspLI GGNNCC 2 cut(s) 196, 197
BspOI GCTAGC 1 cut(s) 857
BspQI GCTCTTC 1 cut(s) 729
BspTNI GGTCTC 1 cut(s) 4
BsrBI CCGCTC 2 cut(s) 157, 288
BsrI ACTGG 1 cut(s) 495
BssECI CCNNGG 6 cut(s) 103, 138, 177, 192, 420, 824
BssMI GATC 2 cut(s) 303, 484
BssNI GRCGYC 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 4 cut(s) 173, 179, 421, 826
Bst4CI ACNGT 4 cut(s) 312, 631, 668, 818
Bst6I CTCTTC 1 cut(s) 729
BstACI GRCGYC 1 cut(s) 339
BstBAI YACGTR 1 cut(s) 329
BstC8I GCNNGC 4 cut(s) 189, 697, 789, 855
BstDEI CTNAG 1 cut(s) 712
BstENI CCTNNNNNAGG 1 cut(s) 176
BstFNI CGCG 4 cut(s) 210, 252, 345, 598
BstHHI GCGC 2 cut(s) 252, 282
BstKTI GATC 2 cut(s) 306, 487
BstMAI GTCTC 4 cut(s) 4, 68, 220, 271
BstMBI GATC 2 cut(s) 303, 484
BstMCI CGRYCG 1 cut(s) 487
BstMWI GCNNNNNNNGC 3 cut(s) 188, 351, 643
BstNI CCWGG 4 cut(s) 173, 179, 421, 826
BstPAI GACNNNNGTC 1 cut(s) 329
BstSCI CCNGG 7 cut(s) 138, 171, 177, 191, 320, 419, 824
BstSLI GKGCMC 1 cut(s) 199
BstUI CGCG 4 cut(s) 210, 252, 345, 598
BstV2I GAAGAC 4 cut(s) 18, 27, 33, 595
BsuRI GGCC 6 cut(s) 125, 171, 176, 182, 197, 407
BtgZI GCGATG 1 cut(s) 579
Cac8I GCNNGC 4 cut(s) 189, 697, 789, 855
CaiI CAGNNNCTG 1 cut(s) 172
CciI TCATGA 2 cut(s) 556, 609
CfoI GCGC 2 cut(s) 252, 282
Cfr13I GGNCC 6 cut(s) 169, 175, 181, 195, 196, 312
CseI GACGC 4 cut(s) 77, 199, 241, 328
CspCI CAANNNNNGTGG 2 cut(s) 533, 568
CviAII CATG 8 cut(s) 5, 60, 118, 529, 557, 584, 610, 893
DdeI CTNAG 1 cut(s) 712
DpnI GATC 2 cut(s) 305, 486
DpnII GATC 2 cut(s) 303, 484
Eam1104I CTCTTC 1 cut(s) 729
EarI CTCTTC 1 cut(s) 729
EciI GGCGGA 4 cut(s) 194, 208, 457, 714
Eco130I CCWWGG 1 cut(s) 103
Eco24I GRGCYC 2 cut(s) 199, 793
Eco31I GGTCTC 1 cut(s) 4
Eco47I GGWCC 1 cut(s) 312
Eco72I CACGTG 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 242
EcoNI CCTNNNNNAGG 1 cut(s) 176
EcoO109I RGGNCCY 2 cut(s) 169, 195
EcoRII CCWGG 4 cut(s) 171, 177, 419, 824
EcoT14I CCWWGG 1 cut(s) 103
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 199, 793
ErhI CCWWGG 1 cut(s) 103
Esp3I CGTCTC 2 cut(s) 220, 271
FaeI CATG 8 cut(s) 8, 63, 121, 532, 560, 587, 613, 896
FaqI GGGAC 1 cut(s) 533
FatI CATG 8 cut(s) 4, 59, 117, 528, 556, 583, 609, 892
FauI CCCGC 2 cut(s) 162, 293
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 3 cut(s) 123, 208, 471
FriOI GRGCYC 2 cut(s) 199, 793
Fsp4HI GCNGC 3 cut(s) 123, 208, 471
FspBI CTAG 1 cut(s) 854
GlaI GCGC 2 cut(s) 251, 281
GluI GCNGC 3 cut(s) 123, 208, 471
GsaI CCCAGC 1 cut(s) 187
HaeIII GGCC 6 cut(s) 125, 171, 176, 182, 197, 407
HapII CCGG 5 cut(s) 140, 192, 322, 355, 455
HgaI GACGC 4 cut(s) 77, 199, 241, 328
HhaI GCGC 2 cut(s) 252, 282
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 8 cut(s) 8, 63, 121, 532, 560, 587, 613, 896
Hin6I GCGC 2 cut(s) 250, 280
HinP1I GCGC 2 cut(s) 250, 280
HincII GTYRAC 1 cut(s) 591
HindII GTYRAC 1 cut(s) 591
HinfI GANTC 7 cut(s) 98, 230, 438, 464, 506, 836, 860
HpaI GTTAAC 1 cut(s) 591
HpaII CCGG 5 cut(s) 140, 192, 322, 355, 455
HphI GGTGA 2 cut(s) 151, 750
Hpy166II GTNNAC 4 cut(s) 256, 481, 591, 627
Hpy188I TCNGA 2 cut(s) 308, 865
Hpy188III TCNNGA 7 cut(s) 67, 113, 376, 455, 503, 557, 610
Hpy8I GTNNAC 4 cut(s) 256, 481, 591, 627
Hpy99I CGWCG 2 cut(s) 215, 887
HpyAV CCTTC 2 cut(s) 325, 397
HpyCH4III ACNGT 4 cut(s) 312, 631, 668, 818
HpyCH4IV ACGT 4 cut(s) 32, 264, 328, 885
HpyCH4V TGCA 2 cut(s) 4, 685
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 351, 643
HpyF3I CTNAG 1 cut(s) 712
HpySE526I ACGT 4 cut(s) 32, 264, 328, 885
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 8 cut(s) 8, 63, 121, 532, 560, 587, 613, 896
HspAI GCGC 2 cut(s) 250, 280
Kpn2I TCCGGA 1 cut(s) 454
KspAI GTTAAC 1 cut(s) 591
Kzo9I GATC 2 cut(s) 303, 484
LguI GCTCTTC 1 cut(s) 729
LmnI GCTCC 3 cut(s) 293, 364, 692
LweI GCATC 1 cut(s) 672
MaeI CTAG 1 cut(s) 854
MaeII ACGT 4 cut(s) 32, 264, 328, 885
MaeIII GTNAC 1 cut(s) 89
MalI GATC 2 cut(s) 305, 486
MbiI CCGCTC 2 cut(s) 157, 288
MboI GATC 2 cut(s) 303, 484
MboII GAAGA 8 cut(s) 9, 12, 18, 27, 33, 433, 595, 746
MhlI GDGCHC 3 cut(s) 199, 648, 793
MluCI AATT 6 cut(s) 379, 573, 638, 671, 686, 922
MlyI GAGTC 3 cut(s) 224, 473, 854
MmeI TCCRAC 2 cut(s) 258, 788
MnlI CCTC 6 cut(s) 340, 385, 451, 510, 617, 724
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 454
MroXI GAANNNNTTC 1 cut(s) 617
MseI TTAA 3 cut(s) 411, 564, 590
MslI CAYNNNNRTG 1 cut(s) 527
MspA1I CMGCKG 1 cut(s) 473
MspI CCGG 5 cut(s) 140, 192, 322, 355, 455
MspR9I CCNGG 7 cut(s) 140, 173, 179, 193, 322, 421, 826
MvaI CCWGG 4 cut(s) 173, 179, 421, 826
MvnI CGCG 4 cut(s) 210, 252, 345, 598
MwoI GCNNNNNNNGC 3 cut(s) 188, 351, 643
NciI CCSGG 3 cut(s) 140, 193, 322
NdeII GATC 2 cut(s) 303, 484
NheI GCTAGC 1 cut(s) 853
NlaIII CATG 8 cut(s) 8, 63, 121, 532, 560, 587, 613, 896
NlaIV GGNNCC 2 cut(s) 196, 197
NmuCI GTSAC 1 cut(s) 89
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 2 cut(s) 556, 609
PciSI GCTCTTC 1 cut(s) 729
PcsI WCGNNNNNNNCGW 3 cut(s) 29, 219, 342
PdmI GAANNNNTTC 1 cut(s) 617
PfeI GAWTC 4 cut(s) 98, 438, 506, 836
PfoI TCCNGGA 1 cut(s) 320
PkrI GCNGC 3 cut(s) 124, 209, 472
Ple19I CGATCG 1 cut(s) 487
PleI GAGTC 3 cut(s) 224, 472, 854
PmaCI CACGTG 1 cut(s) 329
PmlI CACGTG 1 cut(s) 329
PpsI GAGTC 3 cut(s) 224, 472, 854
Ppu21I YACGTR 1 cut(s) 329
PshAI GACNNNNGTC 1 cut(s) 329
Psp6I CCWGG 4 cut(s) 171, 177, 419, 824
PspCI CACGTG 1 cut(s) 329
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 4 cut(s) 171, 177, 419, 824
PspN4I GGNNCC 2 cut(s) 196, 197
PspOMI GGGCCC 1 cut(s) 195
PspPI GGNCC 6 cut(s) 169, 175, 181, 195, 196, 312
PstNI CAGNNNCTG 1 cut(s) 172
PvuI CGATCG 1 cut(s) 487
RseI CAYNNNNRTG 1 cut(s) 527
SapI GCTCTTC 1 cut(s) 729
SaqAI TTAA 3 cut(s) 411, 564, 590
SatI GCNGC 3 cut(s) 123, 208, 471
Sau3AI GATC 2 cut(s) 303, 484
Sau96I GGNCC 6 cut(s) 169, 175, 181, 195, 196, 312
SchI GAGTC 3 cut(s) 224, 473, 854
ScrFI CCNGG 7 cut(s) 140, 173, 179, 193, 322, 421, 826
SduI GDGCHC 3 cut(s) 199, 648, 793
SfaNI GCATC 1 cut(s) 672
SinI GGWCC 1 cut(s) 312
SmiMI CAYNNNNRTG 1 cut(s) 527
Sse9I AATT 6 cut(s) 379, 573, 638, 671, 686, 922
SspMI CTAG 1 cut(s) 854
StyD4I CCNGG 7 cut(s) 138, 171, 177, 191, 320, 419, 824
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 4 cut(s) 312, 631, 668, 818
TaiI ACGT 4 cut(s) 35, 267, 331, 888
TaqI TCGA 2 cut(s) 642, 676
TasI AATT 6 cut(s) 379, 573, 638, 671, 686, 922
TauI GCSGC 3 cut(s) 125, 210, 473
TfiI GAWTC 4 cut(s) 98, 438, 506, 836
Tru1I TTAA 3 cut(s) 411, 564, 590
Tru9I TTAA 3 cut(s) 411, 564, 590
TseFI GTSAC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 6 cut(s) 416, 545, 626, 820, 828, 909
TspGWI ACGGA 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 312
XagI CCTNNNNNAGG 1 cut(s) 176
XapI RAATTY 2 cut(s) 379, 671
XmiI GTMKAC 1 cut(s) 255
XmnI GAANNNNTTC 1 cut(s) 617
XspI CTAG 1 cut(s) 854
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.