Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014388

Physical Location & Seq

Genomic Coordinates Forward (+)

721778 .. 723400

Gene Structure 1623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G03080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGACCTAATACCTCAGCAGCTCAAGGCCGTAACTCTTACACACGTCCGGTACCGTCCCGGAGATCAGCTCGGACATTTCCTCGCCTGGATCTCTCTCGTCCCAGTCTTCATTAGCCTCGGTGGATTCGTCTCTCATTTCCTTTTCCGGCGTGAGCTTCAAGGGATCTTCTTCGGTATAGGTCTCGTGATCTCACAATTCATCAACGAGTTTATCAAAACATCTGTAGAGCAAGCGCGTCCCGAGACATGTACGTTGCTCGAAGCTTGCGATTCACATGGATGGCCATCAAGCCACTCGCAATTCATGTTCTTCTTCGCTACGTATTTCAGTTTGATGGGATGTAAAGGAATTGGATTCTGGTTTGGTTTAAGAAGCAGATGGATTATGAATCTTCTTCATTGGTCTTTAGCTGTTGTTACCATGTATTCTAGGGTTTATTTAGGTTACCACACGGTGGCGCAGGTTTTTGCTGGTGCGGCTCTTGGGGGTATTGTTGGTGCGAGTTGGTTCTGGGTGGTGAATTCTGTGTTGTATCCATTTTTTCCGGTGATTGAGGAGAGTGTATTGGGGAGATGGCTATATGTTAAGGATACTTCGCATATTCCTGATGTGTTGAAGTTTGAATATGACAATGCCAGAGCTGCTAGGAAGGATATGGATTCTGCTAAATCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009856 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0022414 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0048856 GO:0048868 GO:0051704 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

226

Amino Acids

25.75

Weight (kDa)

7.79

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2	PF01569	57 - 175	3.7e-18	PAP2 superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03080
fragaria_vesca	FvH4_6g15490 FvH4_6g15490 FvH4_6g15490
malus_domestica	MD04G1105500.v1.1 MD12G1123000.v1.1
prunus_persica	Prupe.6G240200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0468971
rosa_laevigata	RLG00000024394
rosa_multiflora	Rmu_sc0001639.1_g000006
rosa_roxburghii	Rroxscaffold_6G00412410
rosa_rugosa	Rorug03G0098000 Rorug03G0098100
rosa_samantha	Rh3AG147700 Rh3BG170300 Rh3DG204800
rosa_wichuraiana	Rw3G013900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	454
Acc65I	GGTACC	1 cut(s)	51
AccB1I	GGYRCC	1 cut(s)	51
AccB7I	CCANNNNNTGG	1 cut(s)	457
AccII	CGCG	1 cut(s)	238
AciI	CCGC	1 cut(s)	479
AclWI	GGATC	2 cut(s)	98, 173
AcoI	YGGCCR	1 cut(s)	284
AcsI	RAATTY	1 cut(s)	523
AdeI	CACNNNGTG	1 cut(s)	457
AfaI	GTAC	2 cut(s)	53, 253
AfiI	CCNNNNNNNGG	1 cut(s)	457
AflIII	ACRYGT	2 cut(s)	43, 248
AgsI	TTSAA	3 cut(s)	161, 619, 626
AjiI	CACGTC	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	86
AluBI	AGCT	6 cut(s)	22, 70, 157, 266, 413, 644
AluI	AGCT	6 cut(s)	22, 70, 157, 266, 413, 644
Alw26I	GTCTC	3 cut(s)	136, 188, 239
AlwI	GGATC	2 cut(s)	98, 173
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	2 cut(s)	27, 284
ApeKI	GCWGC	2 cut(s)	19, 644
ApoI	RAATTY	1 cut(s)	523
Asp718I	GGTACC	1 cut(s)	51
AspLEI	GCGC	2 cut(s)	238, 463
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	532, 562
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	4
BalI	TGGCCA	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	51
BauI	CACGAG	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	100
BbvCI	CCTCAGC	1 cut(s)	15
BbvI	GCAGC	2 cut(s)	31, 631
BccI	CCATC	5 cut(s)	276, 295, 331, 375, 570
BceAI	ACGGC	1 cut(s)	14
BciT130I	CCWGG	1 cut(s)	88
BciVI	GTATCC	2 cut(s)	546, 586
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	3 cut(s)	136, 188, 239
BfaI	CTAG	2 cut(s)	432, 648
BfmI	CTRYAG	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	454
BfuI	GTATCC	2 cut(s)	546, 586
BisI	GCNGC	3 cut(s)	20, 480, 645
BlsI	GCNGC	3 cut(s)	21, 481, 646
Bme1390I	CCNGG	2 cut(s)	60, 88
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	242
BmgBI	CACGTC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	2 cut(s)	60, 88
BmrI	ACTGGG	1 cut(s)	98
BmuI	ACTGGG	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	100
BplI	GAGNNNNNCTC	2 cut(s)	54, 86
Bpu10I	CCTNAGC	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	8
BpuMI	CCSGG	1 cut(s)	60
BsaAI	YACGTR	1 cut(s)	324
BsaBI	GATNNNNATC	1 cut(s)	286
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	118
BsaWI	WCCGGW	2 cut(s)	48, 547
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse1I	ACTGG	1 cut(s)	104
Bse8I	GATNNNNATC	1 cut(s)	286
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	2 cut(s)	287, 347
BseJI	GATNNNNATC	1 cut(s)	286
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	104
BseRI	GAGGAG	1 cut(s)	572
BseXI	GCAGC	2 cut(s)	31, 631
Bsh1236I	CGCG	1 cut(s)	238
BshFI	GGCC	2 cut(s)	29, 286
BshNI	GGYRCC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	4 cut(s)	49, 60, 148, 548
BslFI	GGGAC	3 cut(s)	42, 86, 225
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	3 cut(s)	136, 188, 239
BsmBI	CGTCTC	1 cut(s)	136
BsmFI	GGGAC	3 cut(s)	42, 86, 225
BsnI	GGCC	2 cut(s)	29, 286
Bso31I	GGTCTC	1 cut(s)	188
BsoBI	CYCGRG	1 cut(s)	242
Bsp143I	GATC	4 cut(s)	64, 90, 165, 189
BspACI	CCGC	1 cut(s)	479
BspANI	GGCC	2 cut(s)	29, 286
BspCNI	CTCAG	1 cut(s)	28
BspFNI	CGCG	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	53
BspMI	ACCTGC	1 cut(s)	454
BspPI	GGATC	2 cut(s)	98, 173
BspT107I	GGYRCC	1 cut(s)	51
BspTNI	GGTCTC	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	4 cut(s)	64, 90, 165, 189
BssSI	CACGAG	1 cut(s)	185
Bst2BI	CACGAG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	88
Bst4CI	ACNGT	2 cut(s)	56, 457
BstBAI	YACGTR	1 cut(s)	324
BstC8I	GCNNGC	2 cut(s)	234, 268
BstDEI	CTNAG	1 cut(s)	15
BstEII	GGTNACC	1 cut(s)	446
BstF5I	GGATG	2 cut(s)	287, 347
BstFNI	CGCG	1 cut(s)	238
BstHHI	GCGC	2 cut(s)	238, 463
BstKTI	GATC	4 cut(s)	67, 93, 168, 192
BstMAI	GTCTC	3 cut(s)	136, 188, 239
BstMBI	GATC	4 cut(s)	64, 90, 165, 189
BstMWI	GCNNNNNNNGC	2 cut(s)	479, 644
BstNI	CCWGG	1 cut(s)	88
BstNSI	RCATGY	1 cut(s)	252
BstPI	GGTNACC	1 cut(s)	446
BstSCI	CCNGG	2 cut(s)	58, 86
BstSFI	CTRYAG	1 cut(s)	225
BstSNI	TACGTA	1 cut(s)	324
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	2 cut(s)	31, 631
BstV2I	GAAGAC	1 cut(s)	100
BstX2I	RGATCY	2 cut(s)	90, 165
BstYI	RGATCY	2 cut(s)	90, 165
BsuI	GTATCC	2 cut(s)	546, 586
BsuRI	GGCC	2 cut(s)	29, 286
BtrI	CACGTC	1 cut(s)	46
BtsCI	GGATG	2 cut(s)	287, 347
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	2 cut(s)	234, 268
CfoI	GCGC	2 cut(s)	238, 463
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	52, 252
CviAII	CATG	4 cut(s)	249, 278, 307, 424
CviQI	GTAC	2 cut(s)	52, 252
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	4 cut(s)	66, 92, 167, 191
DpnII	GATC	4 cut(s)	64, 90, 165, 189
DraIII	CACNNNGTG	1 cut(s)	457
EaeI	YGGCCR	1 cut(s)	284
Eco105I	TACGTA	1 cut(s)	324
Eco31I	GGTCTC	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	242
Eco91I	GGTNACC	1 cut(s)	446
EcoO65I	GGTNACC	1 cut(s)	446
EcoRI	GAATTC	1 cut(s)	523
EcoRII	CCWGG	1 cut(s)	86
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	4 cut(s)	252, 281, 310, 427
FaqI	GGGAC	3 cut(s)	42, 86, 225
FatI	CATG	4 cut(s)	248, 277, 306, 423
Fnu4HI	GCNGC	3 cut(s)	20, 480, 645
FokI	GGATG	2 cut(s)	294, 354
Fsp4HI	GCNGC	3 cut(s)	20, 480, 645
FspBI	CTAG	2 cut(s)	432, 648
GlaI	GCGC	2 cut(s)	237, 462
GluI	GCNGC	3 cut(s)	20, 480, 645
HaeIII	GGCC	2 cut(s)	29, 286
HapII	CCGG	4 cut(s)	49, 60, 148, 548
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	2 cut(s)	238, 463
Hin1II	CATG	4 cut(s)	252, 281, 310, 427
Hin6I	GCGC	2 cut(s)	236, 461
HinP1I	GCGC	2 cut(s)	236, 461
HindIII	AAGCTT	1 cut(s)	264
HinfI	GANTC	5 cut(s)	126, 272, 357, 391, 662
HpaII	CCGG	4 cut(s)	49, 60, 148, 548
HphI	GGTGA	2 cut(s)	532, 562
Hpy188I	TCNGA	2 cut(s)	74, 676
Hpy188III	TCNNGA	3 cut(s)	187, 242, 608
HpyAV	CCTTC	1 cut(s)	646
HpyCH4III	ACNGT	2 cut(s)	56, 457
HpyCH4IV	ACGT	3 cut(s)	45, 254, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	479, 644
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	3 cut(s)	45, 254, 323
Hsp92II	CATG	4 cut(s)	252, 281, 310, 427
HspAI	GCGC	2 cut(s)	236, 461
KpnI	GGTACC	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	64, 90, 165, 189
Lsp1109I	GCAGC	2 cut(s)	31, 631
MaeI	CTAG	2 cut(s)	432, 648
MaeII	ACGT	3 cut(s)	45, 254, 323
MaeIII	GTNAC	3 cut(s)	31, 418, 446
MalI	GATC	4 cut(s)	66, 92, 167, 191
MboI	GATC	4 cut(s)	64, 90, 165, 189
MboII	GAAGA	7 cut(s)	100, 160, 163, 304, 307, 386, 389
MflI	RGATCY	2 cut(s)	90, 165
MlsI	TGGCCA	1 cut(s)	286
MluCI	AATT	4 cut(s)	197, 302, 351, 523
MluNI	TGGCCA	1 cut(s)	286
MnlI	CCTC	4 cut(s)	24, 92, 128, 550
Mox20I	TGGCCA	1 cut(s)	286
MscI	TGGCCA	1 cut(s)	286
MseI	TTAA	3 cut(s)	371, 588, 679
MslI	CAYNNNNRTG	1 cut(s)	280
Msp20I	TGGCCA	1 cut(s)	286
MspI	CCGG	4 cut(s)	49, 60, 148, 548
MspR9I	CCNGG	2 cut(s)	60, 88
MvaI	CCWGG	1 cut(s)	88
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	2 cut(s)	479, 644
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	4 cut(s)	64, 90, 165, 189
NlaIII	CATG	4 cut(s)	252, 281, 310, 427
NlaIV	GGNNCC	1 cut(s)	53
NspI	RCATGY	1 cut(s)	252
PciI	ACATGT	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	2 cut(s)	126, 267
PfeI	GAWTC	5 cut(s)	126, 272, 357, 391, 662
PflMI	CCANNNNNTGG	1 cut(s)	457
PfoI	TCCNGGA	1 cut(s)	58
PkrI	GCNGC	3 cut(s)	21, 481, 646
Ppu21I	YACGTR	1 cut(s)	324
PscI	ACATGT	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	86
PspEI	GGTNACC	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	2 cut(s)	90, 165
RsaI	GTAC	2 cut(s)	53, 253
RsaNI	GTAC	2 cut(s)	52, 252
RseI	CAYNNNNRTG	1 cut(s)	280
SaqAI	TTAA	3 cut(s)	371, 588, 679
SatI	GCNGC	3 cut(s)	20, 480, 645
Sau3AI	GATC	4 cut(s)	64, 90, 165, 189
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	60, 88
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SnaBI	TACGTA	1 cut(s)	324
Sse9I	AATT	4 cut(s)	197, 302, 351, 523
SsiI	CCGC	1 cut(s)	479
SspMI	CTAG	2 cut(s)	432, 648
StyD4I	CCNGG	2 cut(s)	58, 86
TaaI	ACNGT	2 cut(s)	56, 457
TaiI	ACGT	3 cut(s)	48, 257, 326
TaqI	TCGA	1 cut(s)	261
TasI	AATT	4 cut(s)	197, 302, 351, 523
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	5 cut(s)	126, 272, 357, 391, 662
Tru1I	TTAA	3 cut(s)	371, 588, 679
Tru9I	TTAA	3 cut(s)	371, 588, 679
TseI	GCWGC	2 cut(s)	19, 644
TspDTI	ATGAA	5 cut(s)	100, 190, 295, 389, 404
Van91I	CCANNNNNTGG	1 cut(s)	457
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	523
XceI	RCATGY	1 cut(s)	252
XspI	CTAG	2 cut(s)	432, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.