Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0014388

Physical Location & Seq

Genomic Coordinates Forward (+)

14596757 .. 14599840

Gene Structure 3084 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG170300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCACCCCACAAAGCTGTGACGCTGACCCACGTCCGGTACCAGAAGGGCGACCCATTGGGACACTTCCTCGCCTGGGTTTCCCTCATCCCAGTCTTCATCTCCTTAGGCGGCTTCATCTCCCACTTCATCTTCCGCCGTGAGCTCCAAGGCATGTTCTTCGCCATCGGCCTCATAATCTCTCAACTCATCAACGAAGTCATCAAGGATTTGTTCCAGCAAGCTCGCCCCGCCACCTGTGCCCTCCTCGAAATGTGTGACTCCCATGGATGGCCTTCAAGTCACTCCCAGTACATGTTCTTCTTCGCTGTTTACTTTACCCTTTTGACCCAGAAAGGAATTGGGCTGTGGGATACCAAGCACAAGTTTGCTGTGAATTTCTTGCCGTGGTGCTTGGCTTTGCTGACTATGTATTCCAGGGTTTATTTGGGGTATCATACTGTGGCTCAGGTTTTTGCTGGGTCTGCTTTGGGGATTTTTCTTGGGGGTTTGTGGTTTTGGGTTGTGAATTCTGTGTTCATATGTTACTTTCCGGCGATTGAGGAAAGTGCGTTTGGGAGGTTCTTTTATGTTAAGGATACTTCTCATATACCCAATGTGTTGAAGTTTGAGTACGACAATGCGAGGAAAGCTAGGAGCGAAAAGGCTGCCAAGTCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009856 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0022414 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0048856 GO:0048868 GO:0051704 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

220

Amino Acids

25.13

Weight (kDa)

9.18

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2	PF01569	52 - 170	1.8e-21	PAP2 superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0014388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03080
fragaria_vesca	FvH4_6g15490 FvH4_6g15490 FvH4_6g15490
malus_domestica	MD04G1105500.v1.1 MD12G1123000.v1.1
prunus_persica	Prupe.6G240200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0468971
rosa_laevigata	RLG00000024394
rosa_multiflora	Rmu_sc0001639.1_g000006
rosa_roxburghii	Rroxscaffold_6G00412410
rosa_rugosa	Rorug03G0098000 Rorug03G0098100
rosa_samantha	Rh3AG147700 Rh3BG170300 Rh3DG204800
rosa_wichuraiana	Rw3G013900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	39
AccB1I	GGYRCC	2 cut(s)	4, 39
AciI	CCGC	3 cut(s)	111, 136, 231
AcsI	RAATTY	2 cut(s)	376, 508
AfaI	GTAC	3 cut(s)	41, 293, 614
AfiI	CCNNNNNNNGG	3 cut(s)	36, 76, 270
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	279, 604
AjiI	CACGTC	1 cut(s)	34
AjnI	CCWGG	2 cut(s)	74, 416
AjuI	GAANNNNNNNTTGG	2 cut(s)	537, 569
AluBI	AGCT	4 cut(s)	17, 145, 224, 632
AluI	AGCT	4 cut(s)	17, 145, 224, 632
Alw21I	GWGCWC	1 cut(s)	147
AoxI	GGCC	2 cut(s)	169, 272
ApeKI	GCWGC	1 cut(s)	647
ApoI	RAATTY	2 cut(s)	376, 508
Asp718I	GGTACC	1 cut(s)	39
AxyI	CCTNAGG	1 cut(s)	106
BaeGI	GKGCMC	1 cut(s)	244
BanI	GGYRCC	2 cut(s)	4, 39
BanII	GRGCYC	1 cut(s)	147
BarI	GAAGNNNNNNTAC	4 cut(s)	284, 316, 596, 628
BbsI	GAAGAC	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	634
BccI	CCATC	2 cut(s)	173, 264
BceAI	ACGGC	2 cut(s)	123, 370
BcgI	CGANNNNNNTGC	4 cut(s)	142, 176, 629, 663
BciT130I	CCWGG	2 cut(s)	76, 418
BciVI	GTATCC	2 cut(s)	346, 571
BfaI	CTAG	1 cut(s)	633
BfuI	GTATCC	2 cut(s)	346, 571
BisI	GCNGC	2 cut(s)	112, 648
BlsI	GCNGC	2 cut(s)	113, 649
Bme1390I	CCNGG	2 cut(s)	76, 418
BmgBI	CACGTC	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	6, 41
BmrFI	CCNGG	2 cut(s)	76, 418
BmrI	ACTGGG	2 cut(s)	86, 283
BmuI	ACTGGG	2 cut(s)	86, 283
BoxI	GACNNNNGTC	1 cut(s)	32
BpiI	GAAGAC	1 cut(s)	88
Bpu10I	CCTNAGC	1 cut(s)	447
BsaJI	CCNNGG	5 cut(s)	75, 148, 265, 386, 417
BsaWI	WCCGGW	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 76, 270
Bse1I	ACTGG	2 cut(s)	92, 289
Bse21I	CCTNAGG	1 cut(s)	106
BseBI	CCWGG	2 cut(s)	76, 418
BseDI	CCNNGG	5 cut(s)	75, 148, 265, 386, 417
BseGI	GGATG	2 cut(s)	87, 275
BseLI	CCNNNNNNNGG	3 cut(s)	36, 76, 270
BseMII	CTCAG	1 cut(s)	461
BseNI	ACTGG	2 cut(s)	92, 289
BseRI	GAGGAG	1 cut(s)	236
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	1 cut(s)	634
BseYI	CCCAGC	1 cut(s)	458
BshFI	GGCC	2 cut(s)	171, 274
BshNI	GGYRCC	2 cut(s)	4, 39
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	2 cut(s)	37, 533
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	3 cut(s)	36, 76, 270
BsmFI	GGGAC	1 cut(s)	75
BsnI	GGCC	2 cut(s)	171, 274
Bsp1286I	GDGCHC	2 cut(s)	147, 244
Bsp19I	CCATGG	1 cut(s)	265
BspACI	CCGC	3 cut(s)	111, 136, 231
BspANI	GGCC	2 cut(s)	171, 274
BspCNI	CTCAG	1 cut(s)	460
BspLI	GGNNCC	2 cut(s)	6, 41
BspT107I	GGYRCC	2 cut(s)	4, 39
BsrI	ACTGG	2 cut(s)	92, 289
BssECI	CCNNGG	5 cut(s)	75, 148, 265, 386, 417
BssT1I	CCWWGG	2 cut(s)	148, 265
Bst2UI	CCWGG	2 cut(s)	76, 418
Bst4CI	ACNGT	1 cut(s)	442
BstC8I	GCNNGC	2 cut(s)	222, 226
BstDEI	CTNAG	2 cut(s)	106, 447
BstDSI	CCRYGG	2 cut(s)	265, 386
BstF5I	GGATG	2 cut(s)	87, 275
BstMWI	GCNNNNNNNGC	4 cut(s)	230, 239, 464, 629
BstNI	CCWGG	2 cut(s)	76, 418
BstNSI	RCATGY	2 cut(s)	157, 298
BstPAI	GACNNNNGTC	1 cut(s)	32
BstSCI	CCNGG	2 cut(s)	74, 416
BstSLI	GKGCMC	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	634
BstV2I	GAAGAC	1 cut(s)	88
Bsu36I	CCTNAGG	1 cut(s)	106
BsuI	GTATCC	2 cut(s)	346, 571
BsuRI	GGCC	2 cut(s)	171, 274
BtgI	CCRYGG	2 cut(s)	265, 386
BtrI	CACGTC	1 cut(s)	34
BtsCI	GGATG	2 cut(s)	87, 275
Cac8I	GCNNGC	2 cut(s)	222, 226
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	3 cut(s)	40, 292, 613
CviAII	CATG	3 cut(s)	154, 266, 295
CviQI	GTAC	3 cut(s)	40, 292, 613
DdeI	CTNAG	2 cut(s)	106, 447
EciI	GGCGGA	1 cut(s)	125
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	2 cut(s)	148, 265
Eco24I	GRGCYC	1 cut(s)	147
Eco53kI	GAGCTC	1 cut(s)	145
Eco81I	CCTNAGG	1 cut(s)	106
EcoICRI	GAGCTC	1 cut(s)	145
EcoRI	GAATTC	1 cut(s)	508
EcoRII	CCWGG	2 cut(s)	74, 416
EcoT14I	CCWWGG	2 cut(s)	148, 265
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	2 cut(s)	148, 265
FaeI	CATG	3 cut(s)	157, 269, 298
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	3 cut(s)	153, 265, 294
FauI	CCCGC	1 cut(s)	238
FauNDI	CATATG	1 cut(s)	521
Fnu4HI	GCNGC	2 cut(s)	112, 648
FokI	GGATG	2 cut(s)	74, 282
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	2 cut(s)	112, 648
FspBI	CTAG	1 cut(s)	633
GluI	GCNGC	2 cut(s)	112, 648
GsaI	CCCAGC	1 cut(s)	462
HaeIII	GGCC	2 cut(s)	171, 274
HapII	CCGG	2 cut(s)	37, 533
HgaI	GACGC	1 cut(s)	31
Hin1II	CATG	3 cut(s)	157, 269, 298
HinfI	GANTC	1 cut(s)	260
HpaII	CCGG	2 cut(s)	37, 533
Hpy166II	GTNNAC	1 cut(s)	313
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	2 cut(s)	40, 285
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4IV	ACGT	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	4 cut(s)	230, 239, 464, 629
HpyF3I	CTNAG	2 cut(s)	106, 447
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	157, 269, 298
KpnI	GGTACC	1 cut(s)	43
LmnI	GCTCC	2 cut(s)	150, 636
Lsp1109I	GCAGC	1 cut(s)	634
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	4 cut(s)	19, 257, 281, 524
MboII	GAAGA	5 cut(s)	88, 124, 151, 292, 295
MhlI	GDGCHC	2 cut(s)	147, 244
MluCI	AATT	4 cut(s)	339, 376, 508, 658
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	8 cut(s)	80, 95, 182, 254, 257, 535, 552, 618
MseI	TTAA	1 cut(s)	573
MspI	CCGG	2 cut(s)	37, 533
MspR9I	CCNGG	2 cut(s)	76, 418
MvaI	CCWGG	2 cut(s)	76, 418
MwoI	GCNNNNNNNGC	4 cut(s)	230, 239, 464, 629
NcoI	CCATGG	1 cut(s)	265
NdeI	CATATG	1 cut(s)	521
NlaIII	CATG	3 cut(s)	157, 269, 298
NlaIV	GGNNCC	2 cut(s)	6, 41
NmuCI	GTSAC	3 cut(s)	19, 257, 281
NspI	RCATGY	2 cut(s)	157, 298
PciI	ACATGT	1 cut(s)	294
PkrI	GCNGC	2 cut(s)	113, 649
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
PscI	ACATGT	1 cut(s)	294
PshAI	GACNNNNGTC	1 cut(s)	32
Psp124BI	GAGCTC	1 cut(s)	147
Psp6I	CCWGG	2 cut(s)	74, 416
PspFI	CCCAGC	1 cut(s)	458
PspGI	CCWGG	2 cut(s)	74, 416
PspN4I	GGNNCC	2 cut(s)	6, 41
RsaI	GTAC	3 cut(s)	41, 293, 614
RsaNI	GTAC	3 cut(s)	40, 292, 613
SacI	GAGCTC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	573
SatI	GCNGC	2 cut(s)	112, 648
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	2 cut(s)	76, 418
SduI	GDGCHC	2 cut(s)	147, 244
SetI	ASST	8 cut(s)	19, 36, 147, 226, 239, 453, 563, 634
Sse9I	AATT	4 cut(s)	339, 376, 508, 658
SsiI	CCGC	3 cut(s)	111, 136, 231
SspMI	CTAG	1 cut(s)	633
SstI	GAGCTC	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	74, 416
StyI	CCWWGG	2 cut(s)	148, 265
TaaI	ACNGT	1 cut(s)	442
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	249
TasI	AATT	4 cut(s)	339, 376, 508, 658
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	1 cut(s)	114
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TseFI	GTSAC	3 cut(s)	19, 257, 281
TseI	GCWGC	1 cut(s)	647
Tsp45I	GTSAC	3 cut(s)	19, 257, 281
TspDTI	ATGAA	4 cut(s)	88, 106, 118, 508
XapI	RAATTY	2 cut(s)	376, 508
XceI	RCATGY	2 cut(s)	157, 298
XcmI	CCANNNNNNNNNTGG	2 cut(s)	338, 424
XspI	CTAG	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.