Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0014388

Physical Location & Seq

Genomic Coordinates Reverse (-)

19742696 .. 19744919

Gene Structure 2224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1123000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCTGAGCCGTCTCTCAAAGCCGTGACGCTGACCCACGTCCGGTACCAGAGAGGCGACCCACTGGGTCACTTCCTCGCTTGGATTTCCCTAATCCCAGTATTCATCAGCCTCGGCGGCTTCGTCTGCCACTTCTTCTTCCGCCGTGAGCTCCAAGGCATGTTCTTTGCCGTCGGCCTCTTAATCTCCCAGGTCATCAACGAACTCATCAAGGATTTCTTCCAGCAAGCTCGGCCGGAAACCTGCGCCCTGCTCGAGATGTGCGACTCGCACGGATGGCCCTCGAGTCACTCGCAGTACATGTTCTTCTTCGCCACCTACTTTACTCTCCTGACTTACAAAGGGATTGGGCTCTCGGACAGGACGAACAAGTGGGCTGTGATTTTTCCGCCATGGGTTTTGGCTTTGCTGACCATGTATTCGAGGGTTTATTTGGGTTACCACACGGTGGCTCAGGTGTTCGCTGGCTCGGCCCTCGGAGTTTTTCTGGGGGCAGTGTGGTTCTGGGTTGTGAATTCTGTGCTTTACCCGAGCTTTCCGATGATCGAAGAGAGCTGGTTTGGGAGGTATTTTTATATTAAGGACACTTCTCATATACCCAATGTGTTGAAGTTTGAGTATGATAATGCGCGAGAGGCGAGGAGCAAACTGGCTGCCAAGAGTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009856 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0022414 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0048856 GO:0048868 GO:0051704 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

223

Amino Acids

25.55

Weight (kDa)

8.73

Isoelectric Point (pI)

35.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2	PF01569	54 - 172	9.8e-21	PAP2 superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03080
fragaria_vesca	FvH4_6g15490 FvH4_6g15490 FvH4_6g15490
malus_domestica	MD04G1105500.v1.1 MD12G1123000.v1.1
prunus_persica	Prupe.6G240200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0468971
rosa_laevigata	RLG00000024394
rosa_multiflora	Rmu_sc0001639.1_g000006
rosa_roxburghii	Rroxscaffold_6G00412410
rosa_rugosa	Rorug03G0098000 Rorug03G0098100
rosa_samantha	Rh3AG147700 Rh3BG170300 Rh3DG204800
rosa_wichuraiana	Rw3G013900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	251
Acc65I	GGTACC	1 cut(s)	45
AccB1I	GGYRCC	1 cut(s)	45
AccB7I	CCANNNNNTGG	1 cut(s)	448
AccII	CGCG	1 cut(s)	631
AciI	CCGC	3 cut(s)	117, 142, 389
AcoI	YGGCCR	1 cut(s)	233
AcsI	RAATTY	1 cut(s)	514
AdeI	CACNNNGTG	1 cut(s)	448
AfaI	GTAC	2 cut(s)	47, 299
AfiI	CCNNNNNNNGG	2 cut(s)	42, 448
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	1 cut(s)	610
AjiI	CACGTC	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	4 cut(s)	151, 230, 534, 555
AluI	AGCT	4 cut(s)	151, 230, 534, 555
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	1 cut(s)	18
Ama87I	CYCGRG	3 cut(s)	254, 283, 529
AoxI	GGCC	4 cut(s)	175, 233, 278, 471
ApeKI	GCWGC	1 cut(s)	653
ApoI	RAATTY	1 cut(s)	514
ArsI	GACNNNNNNTTYG	2 cut(s)	403, 435
Asp718I	GGTACC	1 cut(s)	45
AspLEI	GCGC	2 cut(s)	248, 631
AspS9I	GGNCC	2 cut(s)	279, 472
AvaI	CYCGRG	3 cut(s)	254, 283, 529
BanI	GGYRCC	1 cut(s)	45
BanII	GRGCYC	2 cut(s)	153, 354
BarI	GAAGNNNNNNTAC	2 cut(s)	290, 322
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	640
BccI	CCATC	1 cut(s)	270
BceAI	ACGGC	3 cut(s)	8, 129, 155
BciT130I	CCWGG	1 cut(s)	191
BcoDI	GTCTC	1 cut(s)	18
BfuAI	ACCTGC	1 cut(s)	251
BglI	GCCNNNNNGGC	1 cut(s)	117
BisI	GCNGC	2 cut(s)	118, 654
BlpI	GCTNAGC	1 cut(s)	6
BlsI	GCNGC	2 cut(s)	119, 655
Bme1390I	CCNGG	1 cut(s)	191
BmeT110I	CYCGRG	3 cut(s)	254, 283, 529
BmgBI	CACGTC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	279, 472
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	191
BmrI	ACTGGG	2 cut(s)	74, 92
BmuI	ACTGGG	2 cut(s)	74, 92
BoxI	GACNNNNGTC	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	453
Bpu1102I	GCTNAGC	1 cut(s)	6
BsaJI	CCNNGG	5 cut(s)	112, 154, 189, 392, 475
BsaWI	WCCGGW	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 448
Bse1I	ACTGG	3 cut(s)	69, 98, 654
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	5 cut(s)	112, 154, 189, 392, 475
BseGI	GGATG	1 cut(s)	281
BseLI	CCNNNNNNNGG	2 cut(s)	42, 448
BseMII	CTCAG	1 cut(s)	467
BseNI	ACTGG	3 cut(s)	69, 98, 654
BseRI	GAGGAG	1 cut(s)	655
BseX3I	CGGCCG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	640
Bsh1236I	CGCG	1 cut(s)	631
Bsh1285I	CGRYCG	1 cut(s)	236
BshFI	GGCC	4 cut(s)	177, 235, 280, 473
BshNI	GGYRCC	1 cut(s)	45
BsiEI	CGRYCG	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	153
BsiHKCI	CYCGRG	3 cut(s)	254, 283, 529
BsiSI	CCGG	2 cut(s)	43, 236
BslI	CCNNNNNNNGG	2 cut(s)	42, 448
BsmAI	GTCTC	1 cut(s)	18
BsmBI	CGTCTC	1 cut(s)	18
BsnI	GGCC	4 cut(s)	177, 235, 280, 473
BsoBI	CYCGRG	3 cut(s)	254, 283, 529
Bsp1286I	GDGCHC	2 cut(s)	153, 354
Bsp143I	GATC	1 cut(s)	543
Bsp1720I	GCTNAGC	1 cut(s)	6
Bsp19I	CCATGG	1 cut(s)	392
BspACI	CCGC	3 cut(s)	117, 142, 389
BspANI	GGCC	4 cut(s)	177, 235, 280, 473
BspCNI	CTCAG	1 cut(s)	466
BspFNI	CGCG	1 cut(s)	631
BspLI	GGNNCC	1 cut(s)	47
BspMI	ACCTGC	1 cut(s)	251
BspT107I	GGYRCC	1 cut(s)	45
BsrI	ACTGG	3 cut(s)	69, 98, 654
BssECI	CCNNGG	5 cut(s)	112, 154, 189, 392, 475
BssMI	GATC	1 cut(s)	543
BssT1I	CCWWGG	2 cut(s)	154, 392
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	1 cut(s)	543
BstC8I	GCNNGC	2 cut(s)	228, 466
BstDEI	CTNAG	2 cut(s)	6, 453
BstDSI	CCRYGG	1 cut(s)	392
BstEII	GGTNACC	1 cut(s)	437
BstF5I	GGATG	1 cut(s)	281
BstFNI	CGCG	1 cut(s)	631
BstHHI	GCGC	2 cut(s)	248, 631
BstKTI	GATC	1 cut(s)	546
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	1 cut(s)	543
BstMCI	CGRYCG	1 cut(s)	236
BstMWI	GCNNNNNNNGC	6 cut(s)	117, 126, 232, 277, 470, 635
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	2 cut(s)	163, 304
BstPAI	GACNNNNGTC	1 cut(s)	38
BstPI	GGTNACC	1 cut(s)	437
BstSCI	CCNGG	1 cut(s)	189
BstUI	CGCG	1 cut(s)	631
BstV1I	GCAGC	1 cut(s)	640
BstZI	CGGCCG	1 cut(s)	233
BsuRI	GGCC	4 cut(s)	177, 235, 280, 473
BtgI	CCRYGG	1 cut(s)	392
BtrI	CACGTC	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	281
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	2 cut(s)	62, 501
BveI	ACCTGC	1 cut(s)	251
Cac8I	GCNNGC	2 cut(s)	228, 466
CfoI	GCGC	2 cut(s)	248, 631
Cfr13I	GGNCC	2 cut(s)	279, 472
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	46, 298
CviAII	CATG	4 cut(s)	160, 301, 393, 415
CviQI	GTAC	2 cut(s)	46, 298
DdeI	CTNAG	2 cut(s)	6, 453
DpnI	GATC	1 cut(s)	545
DpnII	GATC	1 cut(s)	543
DraIII	CACNNNGTG	1 cut(s)	448
EaeI	YGGCCR	1 cut(s)	233
EagI	CGGCCG	1 cut(s)	233
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
EciI	GGCGGA	2 cut(s)	131, 378
Ecl136II	GAGCTC	1 cut(s)	151
EclXI	CGGCCG	1 cut(s)	233
Eco130I	CCWWGG	2 cut(s)	154, 392
Eco24I	GRGCYC	2 cut(s)	153, 354
Eco52I	CGGCCG	1 cut(s)	233
Eco53kI	GAGCTC	1 cut(s)	151
Eco88I	CYCGRG	3 cut(s)	254, 283, 529
Eco91I	GGTNACC	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	151
EcoO65I	GGTNACC	1 cut(s)	437
EcoRI	GAATTC	1 cut(s)	514
EcoRII	CCWGG	1 cut(s)	189
EcoT14I	CCWWGG	2 cut(s)	154, 392
EcoT38I	GRGCYC	2 cut(s)	153, 354
ErhI	CCWWGG	2 cut(s)	154, 392
Esp3I	CGTCTC	1 cut(s)	18
FaeI	CATG	4 cut(s)	163, 304, 396, 418
FaiI	YATR	8 cut(s)	161, 302, 394, 416, 576, 594, 596, 621
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FatI	CATG	4 cut(s)	159, 300, 392, 414
Fnu4HI	GCNGC	2 cut(s)	118, 654
FokI	GGATG	1 cut(s)	288
FriOI	GRGCYC	2 cut(s)	153, 354
Fsp4HI	GCNGC	2 cut(s)	118, 654
GlaI	GCGC	2 cut(s)	247, 630
GluI	GCNGC	2 cut(s)	118, 654
HaeIII	GGCC	4 cut(s)	177, 235, 280, 473
HapII	CCGG	2 cut(s)	43, 236
HgaI	GACGC	1 cut(s)	37
HhaI	GCGC	2 cut(s)	248, 631
Hin1II	CATG	4 cut(s)	163, 304, 396, 418
Hin6I	GCGC	2 cut(s)	246, 629
HinP1I	GCGC	2 cut(s)	246, 629
HinfI	GANTC	2 cut(s)	266, 286
HpaII	CCGG	2 cut(s)	43, 236
Hpy188I	TCNGA	4 cut(s)	358, 479, 540, 668
Hpy188III	TCNNGA	2 cut(s)	256, 331
Hpy99I	CGWCG	1 cut(s)	176
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	1 cut(s)	39
HpyF10VI	GCNNNNNNNGC	6 cut(s)	117, 126, 232, 277, 470, 635
HpyF3I	CTNAG	2 cut(s)	6, 453
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	4 cut(s)	163, 304, 396, 418
HspAI	GCGC	2 cut(s)	246, 629
KpnI	GGTACC	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	543
LmnI	GCTCC	2 cut(s)	156, 642
Lsp1109I	GCAGC	1 cut(s)	640
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	4 cut(s)	25, 68, 287, 437
MalI	GATC	1 cut(s)	545
MboI	GATC	1 cut(s)	543
MboII	GAAGA	6 cut(s)	127, 130, 211, 298, 301, 560
MhlI	GDGCHC	2 cut(s)	153, 354
MluCI	AATT	1 cut(s)	514
MlyI	GAGTC	2 cut(s)	260, 295
MseI	TTAA	2 cut(s)	182, 579
MspI	CCGG	2 cut(s)	43, 236
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
MvnI	CGCG	1 cut(s)	631
MwoI	GCNNNNNNNGC	6 cut(s)	117, 126, 232, 277, 470, 635
NcoI	CCATGG	1 cut(s)	392
NdeII	GATC	1 cut(s)	543
NlaIII	CATG	4 cut(s)	163, 304, 396, 418
NlaIV	GGNNCC	1 cut(s)	47
NmeAIII	GCCGAG	3 cut(s)	93, 211, 449
NmuCI	GTSAC	3 cut(s)	25, 68, 287
NspI	RCATGY	2 cut(s)	163, 304
PaeR7I	CTCGAG	2 cut(s)	254, 283
PciI	ACATGT	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	3 cut(s)	120, 261, 362
PflMI	CCANNNNNTGG	1 cut(s)	448
PkrI	GCNGC	2 cut(s)	119, 655
PleI	GAGTC	2 cut(s)	260, 294
PpsI	GAGTC	2 cut(s)	260, 294
PscI	ACATGT	1 cut(s)	300
PshAI	GACNNNNGTC	1 cut(s)	38
Psp124BI	GAGCTC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	189
PspEI	GGTNACC	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	2 cut(s)	279, 472
PspXI	VCTCGAGB	1 cut(s)	283
RsaI	GTAC	2 cut(s)	47, 299
RsaNI	GTAC	2 cut(s)	46, 298
SacI	GAGCTC	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	182, 579
SatI	GCNGC	2 cut(s)	118, 654
Sau3AI	GATC	1 cut(s)	543
Sau96I	GGNCC	2 cut(s)	279, 472
SchI	GAGTC	2 cut(s)	260, 295
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	2 cut(s)	153, 354
Sfr274I	CTCGAG	2 cut(s)	254, 283
SlaI	CTCGAG	2 cut(s)	254, 283
SmlI	CTYRAG	2 cut(s)	254, 283
SmoI	CTYRAG	2 cut(s)	254, 283
Sse9I	AATT	1 cut(s)	514
SsiI	CCGC	3 cut(s)	117, 142, 389
SstI	GAGCTC	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	189
StyI	CCWWGG	2 cut(s)	154, 392
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	4 cut(s)	255, 284, 422, 546
TasI	AATT	1 cut(s)	514
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	1 cut(s)	120
Tru1I	TTAA	2 cut(s)	182, 579
Tru9I	TTAA	2 cut(s)	182, 579
TscAI	CASTG	2 cut(s)	69, 501
TseFI	GTSAC	3 cut(s)	25, 68, 287
TseI	GCWGC	1 cut(s)	653
Tsp45I	GTSAC	3 cut(s)	25, 68, 287
TspDTI	ATGAA	1 cut(s)	94
TspGWI	ACGGA	1 cut(s)	288
TspRI	CASTG	2 cut(s)	69, 501
Van91I	CCANNNNNTGG	1 cut(s)	448
XapI	RAATTY	1 cut(s)	514
XceI	RCATGY	2 cut(s)	163, 304
XhoI	CTCGAG	2 cut(s)	254, 283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.