Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0014388

Physical Location & Seq

Genomic Coordinates Reverse (-)

19354917 .. 19357841

Gene Structure 2925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1105500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGTTTCGGCGTCTCTCAAAGCCGTGACGCTGACTTACGTCCAGTACCAGAGAGGCGACCAACTGGGTCACTTCCTCGCTTGGATTTCCCTCGTCCCAGTATTCATCAACTTCGGCGGCTTCTTCTGCCACTTCTTCTTCCGCCGTGAACTCCAGGGCATGTTCTTCTTCGTCGGCCTTGTAATCTCCCAGATCATCAACGAGCTCATCAAGGATTTCTTCCAGCAAGCTCGGCCGGAAACCTGCGCTATACTCGAGATGTGCGATTCGCACGGGTGGCCGTCGAGTCACTCGCAGTACATGTTCTTCTTCGCCACATACTTCACCCTCTTGACTTACAAGGGGATTGGGCTCTGGGACACCAAGAACAAGTTGGCGGTGGTTTTTTCTTCCATGGGTTCTGGCTTTGCTGACTATGTGTTTGCGGGATCGGCTTTTGGAGTGTTTCTCGGGGCGGTGTGGTTCTGGGTTGTGAACTCTGTGCTTTACCGTAGCTTTCCGATGATCGAAGAGAGCTGGTTTGGGAGGTATTTTTATATCAAGGATACTTCTCATATACCCAATGTGTTGAAGTTTGAGTATGATAATGCGCGGGATGCGAGGAGTAAACTGGCTGCCAAGATTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009856 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0022414 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0048856 GO:0048868 GO:0051704 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

210

Amino Acids

24.14

Weight (kDa)

8.39

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2	PF01569	54 - 119	5.1e-07	PAP2 superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03080
fragaria_vesca	FvH4_6g15490 FvH4_6g15490 FvH4_6g15490
malus_domestica	MD04G1105500.v1.1 MD12G1123000.v1.1
prunus_persica	Prupe.6G240200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0468971
rosa_laevigata	RLG00000024394
rosa_multiflora	Rmu_sc0001639.1_g000006
rosa_roxburghii	Rroxscaffold_6G00412410
rosa_rugosa	Rorug03G0098000 Rorug03G0098100
rosa_samantha	Rh3AG147700 Rh3BG170300 Rh3DG204800
rosa_wichuraiana	Rw3G013900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	251
AccII	CGCG	1 cut(s)	592
AciI	CCGC	6 cut(s)	117, 142, 377, 425, 455, 592
AclWI	GGATC	1 cut(s)	436
AcoI	YGGCCR	2 cut(s)	233, 278
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	2 cut(s)	47, 299
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	1 cut(s)	571
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	4 cut(s)	205, 230, 495, 516
AluI	AGCT	4 cut(s)	205, 230, 495, 516
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	1 cut(s)	436
Ama87I	CYCGRG	2 cut(s)	254, 449
AoxI	GGCC	3 cut(s)	175, 233, 278
ApeKI	GCWGC	1 cut(s)	614
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
AspLEI	GCGC	2 cut(s)	248, 592
AsuHPI	GGTGA	1 cut(s)	316
AvaI	CYCGRG	2 cut(s)	254, 449
BanII	GRGCYC	2 cut(s)	207, 354
BarI	GAAGNNNNNNTAC	2 cut(s)	290, 322
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	601
BceAI	ACGGC	3 cut(s)	8, 129, 265
BciT130I	CCWGG	1 cut(s)	155
BciVI	GTATCC	1 cut(s)	538
BcoDI	GTCTC	1 cut(s)	18
BfuAI	ACCTGC	1 cut(s)	251
BfuI	GTATCC	1 cut(s)	538
BisI	GCNGC	2 cut(s)	118, 615
BlsI	GCNGC	2 cut(s)	119, 616
Bme1390I	CCNGG	1 cut(s)	155
BmeT110I	CYCGRG	2 cut(s)	254, 449
BmrFI	CCNGG	1 cut(s)	155
BmrI	ACTGGG	2 cut(s)	74, 92
BmsI	GCATC	1 cut(s)	586
BmuI	ACTGGG	2 cut(s)	74, 92
BoxI	GACNNNNGTC	1 cut(s)	38
BplI	GAGNNNNNCTC	2 cut(s)	432, 464
BpmI	CTGGAG	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	154, 393
Bse1I	ACTGG	4 cut(s)	43, 69, 98, 615
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	2 cut(s)	154, 393
BseGI	GGATG	1 cut(s)	601
BseNI	ACTGG	4 cut(s)	43, 69, 98, 615
BseRI	GAGGAG	1 cut(s)	616
BseX3I	CGGCCG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	601
Bsh1236I	CGCG	1 cut(s)	592
Bsh1285I	CGRYCG	1 cut(s)	236
BshFI	GGCC	3 cut(s)	177, 235, 280
BsiEI	CGRYCG	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	2 cut(s)	254, 449
BsiSI	CCGG	1 cut(s)	236
BslFI	GGGAC	2 cut(s)	80, 371
BsmAI	GTCTC	1 cut(s)	18
BsmBI	CGTCTC	1 cut(s)	18
BsmFI	GGGAC	2 cut(s)	80, 371
BsnI	GGCC	3 cut(s)	177, 235, 280
BsoBI	CYCGRG	2 cut(s)	254, 449
Bsp1286I	GDGCHC	2 cut(s)	207, 354
Bsp143I	GATC	3 cut(s)	192, 428, 504
Bsp19I	CCATGG	1 cut(s)	393
BspACI	CCGC	6 cut(s)	117, 142, 377, 425, 455, 592
BspANI	GGCC	3 cut(s)	177, 235, 280
BspFNI	CGCG	1 cut(s)	592
BspMI	ACCTGC	1 cut(s)	251
BspPI	GGATC	1 cut(s)	436
BsrI	ACTGG	4 cut(s)	43, 69, 98, 615
BssECI	CCNNGG	2 cut(s)	154, 393
BssMI	GATC	3 cut(s)	192, 428, 504
BssNI	GRCGYC	1 cut(s)	11
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	1 cut(s)	491
Bst6I	CTCTTC	1 cut(s)	504
BstACI	GRCGYC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	228
BstDSI	CCRYGG	1 cut(s)	393
BstF5I	GGATG	1 cut(s)	601
BstFNI	CGCG	1 cut(s)	592
BstHHI	GCGC	2 cut(s)	248, 592
BstKTI	GATC	3 cut(s)	195, 431, 507
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	3 cut(s)	192, 428, 504
BstMCI	CGRYCG	1 cut(s)	236
BstMWI	GCNNNNNNNGC	5 cut(s)	126, 232, 277, 431, 596
BstNI	CCWGG	1 cut(s)	155
BstNSI	RCATGY	2 cut(s)	163, 304
BstPAI	GACNNNNGTC	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	153
BstUI	CGCG	1 cut(s)	592
BstV1I	GCAGC	1 cut(s)	601
BstZI	CGGCCG	1 cut(s)	233
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	3 cut(s)	177, 235, 280
BtgI	CCRYGG	1 cut(s)	393
BtsCI	GGATG	1 cut(s)	601
BveI	ACCTGC	1 cut(s)	251
Cac8I	GCNNGC	1 cut(s)	228
CfoI	GCGC	2 cut(s)	248, 592
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	46, 298
CviAII	CATG	3 cut(s)	160, 301, 394
CviQI	GTAC	2 cut(s)	46, 298
DpnI	GATC	3 cut(s)	194, 430, 506
DpnII	GATC	3 cut(s)	192, 428, 504
EaeI	YGGCCR	2 cut(s)	233, 278
EagI	CGGCCG	1 cut(s)	233
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
EciI	GGCGGA	1 cut(s)	131
Ecl136II	GAGCTC	1 cut(s)	205
EclXI	CGGCCG	1 cut(s)	233
Eco130I	CCWWGG	1 cut(s)	393
Eco24I	GRGCYC	2 cut(s)	207, 354
Eco52I	CGGCCG	1 cut(s)	233
Eco53kI	GAGCTC	1 cut(s)	205
Eco88I	CYCGRG	2 cut(s)	254, 449
EcoICRI	GAGCTC	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	393
EcoT38I	GRGCYC	2 cut(s)	207, 354
ErhI	CCWWGG	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	18
FaeI	CATG	3 cut(s)	163, 304, 397
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FaqI	GGGAC	2 cut(s)	80, 371
FatI	CATG	3 cut(s)	159, 300, 393
FauI	CCCGC	2 cut(s)	418, 585
Fnu4HI	GCNGC	2 cut(s)	118, 615
FokI	GGATG	1 cut(s)	608
FriOI	GRGCYC	2 cut(s)	207, 354
Fsp4HI	GCNGC	2 cut(s)	118, 615
GlaI	GCGC	2 cut(s)	247, 591
GluI	GCNGC	2 cut(s)	118, 615
GsuI	CTGGAG	1 cut(s)	137
HaeIII	GGCC	3 cut(s)	177, 235, 280
HapII	CCGG	1 cut(s)	236
HgaI	GACGC	1 cut(s)	37
HhaI	GCGC	2 cut(s)	248, 592
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	3 cut(s)	163, 304, 397
Hin6I	GCGC	2 cut(s)	246, 590
HinP1I	GCGC	2 cut(s)	246, 590
HinfI	GANTC	2 cut(s)	266, 286
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	3 cut(s)	149, 475, 608
Hpy188I	TCNGA	1 cut(s)	501
Hpy188III	TCNNGA	2 cut(s)	256, 331
Hpy8I	GTNNAC	3 cut(s)	149, 475, 608
Hpy99I	CGWCG	2 cut(s)	176, 286
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4IV	ACGT	1 cut(s)	39
HpyF10VI	GCNNNNNNNGC	5 cut(s)	126, 232, 277, 431, 596
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	3 cut(s)	163, 304, 397
HspAI	GCGC	2 cut(s)	246, 590
Kzo9I	GATC	3 cut(s)	192, 428, 504
Lsp1109I	GCAGC	1 cut(s)	601
LweI	GCATC	1 cut(s)	586
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	3 cut(s)	25, 68, 287
MalI	GATC	3 cut(s)	194, 430, 506
MboI	GATC	3 cut(s)	192, 428, 504
MhlI	GDGCHC	2 cut(s)	207, 354
MlyI	GAGTC	1 cut(s)	295
MnlI	CCTC	6 cut(s)	47, 86, 101, 338, 519, 594
MseI	TTAA	1 cut(s)	624
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	155
MvnI	CGCG	1 cut(s)	592
MwoI	GCNNNNNNNGC	5 cut(s)	126, 232, 277, 431, 596
NcoI	CCATGG	1 cut(s)	393
NdeII	GATC	3 cut(s)	192, 428, 504
NlaIII	CATG	3 cut(s)	163, 304, 397
NmeAIII	GCCGAG	1 cut(s)	211
NmuCI	GTSAC	3 cut(s)	25, 68, 287
NspI	RCATGY	2 cut(s)	163, 304
PaeR7I	CTCGAG	1 cut(s)	254
PciI	ACATGT	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	266
PkrI	GCNGC	2 cut(s)	119, 616
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
PscI	ACATGT	1 cut(s)	300
PshAI	GACNNNNGTC	1 cut(s)	38
Psp124BI	GAGCTC	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
RsaI	GTAC	2 cut(s)	47, 299
RsaNI	GTAC	2 cut(s)	46, 298
SacI	GAGCTC	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	624
SatI	GCNGC	2 cut(s)	118, 615
Sau3AI	GATC	3 cut(s)	192, 428, 504
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	1 cut(s)	155
SduI	GDGCHC	2 cut(s)	207, 354
SetI	ASST	7 cut(s)	42, 207, 232, 245, 497, 518, 530
SfaNI	GCATC	1 cut(s)	586
Sfr274I	CTCGAG	1 cut(s)	254
SlaI	CTCGAG	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SsiI	CCGC	6 cut(s)	117, 142, 377, 425, 455, 592
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	153
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	1 cut(s)	491
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	3 cut(s)	255, 284, 507
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	1 cut(s)	624
Tru9I	TTAA	1 cut(s)	624
TseFI	GTSAC	3 cut(s)	25, 68, 287
TseI	GCWGC	1 cut(s)	614
Tsp45I	GTSAC	3 cut(s)	25, 68, 287
TspDTI	ATGAA	1 cut(s)	94
XceI	RCATGY	2 cut(s)	163, 304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XhoI	CTCGAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.