Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014388

Physical Location & Seq

Genomic Coordinates Forward (+)

9620199 .. 9623158

Gene Structure 2960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g15490.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCACCCTACAAAGCTGTGACTTTAACCCACATCCGCTACCAAAAAGGCGACCCCTTAGGCCACTTCCTGGCCTGGATATCCCTCATCCCAGTCTTCATCTCCTTCGGCGGCTTCGTTTCCCACTTCATCTTCCGCCGCGAGCTTCAAGGCATGTTCTTCGCAATCGGCCTCATCATCTCCCAGCTCATCAACGAAGTGATCAAAGACTTCTTCCAGCAAGCTCGCCCCGCCACGTGTGCCCTCCTCGAAATGTGCGACTCCCATGGCTGGCCCTCAAGTCATTCTCAGTACATGTTCTTCTTCGCTGTTTACTTCACTCTTTTGACCTACAGAGGAATCGCGCTGTCGGATACCCGGAACAAGCTGGCTGTGATTTTCTTGCCGTGGTGCTTGGCTTTGCTGACTATGTATTCCAGGGTCTATTTGGGGTATCATACTGTGGCTCAGGTGTTTGCTGGGTCGGGTTTGGGGATTGTTCTTGGGGGTTTGTGGTTTTGGGTTGTGAATTCTCTGTTGATTTGTTTCTTTCCGGCGATTGAGGAGAGTGCGTTTGGGAGGTATTTTTATGTTAAGGATACTTCTCATATACCCAATGTGTTGAAGTTTGAGTATGACAATGCGAGGAAAGCGCGGAGCGAGATGGCTGCCAAATCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009856 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0022414 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0048856 GO:0048868 GO:0051704 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

221

Amino Acids

25.12

Weight (kDa)

8.87

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2	PF01569	52 - 170	4.1e-22	PAP2 superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03080
fragaria_vesca	FvH4_6g15490 FvH4_6g15490 FvH4_6g15490
malus_domestica	MD04G1105500.v1.1 MD12G1123000.v1.1
prunus_persica	Prupe.6G240200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0468971
rosa_laevigata	RLG00000024394
rosa_multiflora	Rmu_sc0001639.1_g000006
rosa_roxburghii	Rroxscaffold_6G00412410
rosa_rugosa	Rorug03G0098000 Rorug03G0098100
rosa_samantha	Rh3AG147700 Rh3BG170300 Rh3DG204800
rosa_wichuraiana	Rw3G013900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	70
AccII	CGCG	3 cut(s)	141, 344, 634
AciI	CCGC	6 cut(s)	37, 111, 136, 139, 231, 634
AcsI	RAATTY	1 cut(s)	508
AcvI	CACGTG	1 cut(s)	237
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	2 cut(s)	70, 270
AflIII	ACRYGT	2 cut(s)	236, 294
AgsI	TTSAA	2 cut(s)	149, 604
AjnI	CCWGG	3 cut(s)	69, 74, 416
AluBI	AGCT	5 cut(s)	17, 145, 187, 224, 367
AluI	AGCT	5 cut(s)	17, 145, 187, 224, 367
AoxI	GGCC	4 cut(s)	61, 72, 169, 272
ApeKI	GCWGC	1 cut(s)	647
ApoI	RAATTY	1 cut(s)	508
AspLEI	GCGC	2 cut(s)	346, 634
AspS9I	GGNCC	1 cut(s)	273
AsuC2I	CCSGG	1 cut(s)	358
AxyI	CCTNAGG	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	4
BarI	GAAGNNNNNNTAC	2 cut(s)	284, 316
BbrPI	CACGTG	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	634
BccI	CCATC	1 cut(s)	637
BceAI	ACGGC	1 cut(s)	370
BcgI	CGANNNNNNTGC	4 cut(s)	142, 176, 629, 663
BciT130I	CCWGG	3 cut(s)	71, 76, 418
BciVI	GTATCC	2 cut(s)	346, 571
BclI	TGATCA	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	358
BfmI	CTRYAG	1 cut(s)	331
BfuI	GTATCC	2 cut(s)	346, 571
BisI	GCNGC	3 cut(s)	112, 139, 648
BlsI	GCNGC	3 cut(s)	113, 140, 649
Bme1390I	CCNGG	4 cut(s)	71, 76, 358, 418
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	4 cut(s)	71, 76, 358, 418
BmrI	ACTGGG	1 cut(s)	86
BmuI	ACTGGG	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	88
Bpu10I	CCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	262
BpuMI	CCSGG	1 cut(s)	358
BsaAI	YACGTR	1 cut(s)	237
BsaJI	CCNNGG	3 cut(s)	265, 386, 417
BsaXI	ACNNNNNCTCC	2 cut(s)	536, 566
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 270
Bse1I	ACTGG	1 cut(s)	92
Bse21I	CCTNAGG	1 cut(s)	58
BseBI	CCWGG	3 cut(s)	71, 76, 418
BseDI	CCNNGG	3 cut(s)	265, 386, 417
BseGI	GGATG	2 cut(s)	33, 87
BseLI	CCNNNNNNNGG	2 cut(s)	70, 270
BseMII	CTCAG	3 cut(s)	302, 461, 648
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	2 cut(s)	236, 557
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	1 cut(s)	634
BseYI	CCCAGC	2 cut(s)	183, 458
Bsh1236I	CGCG	3 cut(s)	141, 344, 634
BshFI	GGCC	4 cut(s)	63, 74, 171, 274
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	2 cut(s)	358, 533
BslI	CCNNNNNNNGG	2 cut(s)	70, 270
BsnI	GGCC	4 cut(s)	63, 74, 171, 274
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	201
Bsp19I	CCATGG	1 cut(s)	265
BspACI	CCGC	6 cut(s)	37, 111, 136, 139, 231, 634
BspANI	GGCC	4 cut(s)	63, 74, 171, 274
BspCNI	CTCAG	3 cut(s)	301, 460, 649
BspFNI	CGCG	3 cut(s)	141, 344, 634
BspLI	GGNNCC	1 cut(s)	6
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	92
BssECI	CCNNGG	3 cut(s)	265, 386, 417
BssMI	GATC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	265
Bst2UI	CCWGG	3 cut(s)	71, 76, 418
Bst4CI	ACNGT	1 cut(s)	442
BstBAI	YACGTR	1 cut(s)	237
BstC8I	GCNNGC	5 cut(s)	143, 222, 226, 272, 369
BstDEI	CTNAG	4 cut(s)	58, 288, 447, 657
BstDSI	CCRYGG	2 cut(s)	265, 386
BstF5I	GGATG	2 cut(s)	33, 87
BstFNI	CGCG	3 cut(s)	141, 344, 634
BstHHI	GCGC	2 cut(s)	346, 634
BstKTI	GATC	1 cut(s)	204
BstMBI	GATC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 239, 629
BstNI	CCWGG	3 cut(s)	71, 76, 418
BstNSI	RCATGY	2 cut(s)	157, 298
BstSCI	CCNGG	4 cut(s)	69, 74, 356, 416
BstSFI	CTRYAG	1 cut(s)	331
BstSLI	GKGCMC	1 cut(s)	244
BstUI	CGCG	3 cut(s)	141, 344, 634
BstV1I	GCAGC	1 cut(s)	634
BstV2I	GAAGAC	1 cut(s)	88
Bsu36I	CCTNAGG	1 cut(s)	58
BsuI	GTATCC	2 cut(s)	346, 571
BsuRI	GGCC	4 cut(s)	63, 74, 171, 274
BtgI	CCRYGG	2 cut(s)	265, 386
BtsCI	GGATG	2 cut(s)	33, 87
Cac8I	GCNNGC	5 cut(s)	143, 222, 226, 272, 369
CfoI	GCGC	2 cut(s)	346, 634
Cfr13I	GGNCC	1 cut(s)	273
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	3 cut(s)	154, 266, 295
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	4 cut(s)	58, 288, 447, 657
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
EciI	GGCGGA	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	265
Eco32I	GATATC	1 cut(s)	81
Eco72I	CACGTG	1 cut(s)	237
Eco81I	CCTNAGG	1 cut(s)	58
EcoRI	GAATTC	1 cut(s)	508
EcoRII	CCWGG	3 cut(s)	69, 74, 416
EcoRV	GATATC	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	265
FaeI	CATG	3 cut(s)	157, 269, 298
FaiI	YATR	9 cut(s)	155, 267, 296, 410, 438, 570, 588, 590, 615
FatI	CATG	3 cut(s)	153, 265, 294
FauI	CCCGC	1 cut(s)	238
FbaI	TGATCA	1 cut(s)	201
Fnu4HI	GCNGC	3 cut(s)	112, 139, 648
FokI	GGATG	2 cut(s)	20, 74
Fsp4HI	GCNGC	3 cut(s)	112, 139, 648
GlaI	GCGC	2 cut(s)	345, 633
GluI	GCNGC	3 cut(s)	112, 139, 648
GsaI	CCCAGC	2 cut(s)	187, 462
HaeIII	GGCC	4 cut(s)	63, 74, 171, 274
HapII	CCGG	2 cut(s)	358, 533
HhaI	GCGC	2 cut(s)	346, 634
Hin1II	CATG	3 cut(s)	157, 269, 298
Hin6I	GCGC	2 cut(s)	344, 632
HinP1I	GCGC	2 cut(s)	344, 632
HinfI	GANTC	2 cut(s)	260, 339
HpaII	CCGG	2 cut(s)	358, 533
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	2 cut(s)	352, 658
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4IV	ACGT	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 239, 629
HpyF3I	CTNAG	4 cut(s)	58, 288, 447, 657
HpySE526I	ACGT	1 cut(s)	236
Hsp92II	CATG	3 cut(s)	157, 269, 298
HspAI	GCGC	2 cut(s)	344, 632
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	201
LmnI	GCTCC	1 cut(s)	636
Lsp1109I	GCAGC	1 cut(s)	634
MaeII	ACGT	1 cut(s)	236
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	6 cut(s)	88, 124, 151, 205, 292, 295
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	1 cut(s)	508
MlyI	GAGTC	1 cut(s)	254
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	9 cut(s)	95, 182, 254, 257, 286, 329, 535, 552, 618
MseI	TTAA	2 cut(s)	26, 573
MspI	CCGG	2 cut(s)	358, 533
MspR9I	CCNGG	4 cut(s)	71, 76, 358, 418
MvaI	CCWGG	3 cut(s)	71, 76, 418
MvnI	CGCG	3 cut(s)	141, 344, 634
MwoI	GCNNNNNNNGC	3 cut(s)	230, 239, 629
NciI	CCSGG	1 cut(s)	358
NcoI	CCATGG	1 cut(s)	265
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	3 cut(s)	157, 269, 298
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	19
NspI	RCATGY	2 cut(s)	157, 298
PciI	ACATGT	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 255
PfeI	GAWTC	1 cut(s)	339
PflMI	CCANNNNNTGG	1 cut(s)	70
PkrI	GCNGC	3 cut(s)	113, 140, 649
PleI	GAGTC	1 cut(s)	254
PmaCI	CACGTG	1 cut(s)	237
PmlI	CACGTG	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	254
Ppu21I	YACGTR	1 cut(s)	237
PscI	ACATGT	1 cut(s)	294
Psp6I	CCWGG	3 cut(s)	69, 74, 416
PspCI	CACGTG	1 cut(s)	237
PspFI	CCCAGC	2 cut(s)	183, 458
PspGI	CCWGG	3 cut(s)	69, 74, 416
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	273
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SaqAI	TTAA	2 cut(s)	26, 573
SatI	GCNGC	3 cut(s)	112, 139, 648
Sau3AI	GATC	1 cut(s)	201
Sau96I	GGNCC	1 cut(s)	273
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	4 cut(s)	71, 76, 358, 418
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	9 cut(s)	19, 147, 189, 226, 239, 332, 369, 453, 563
SfcI	CTRYAG	1 cut(s)	331
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	1 cut(s)	508
SsiI	CCGC	6 cut(s)	37, 111, 136, 139, 231, 634
StyD4I	CCNGG	4 cut(s)	69, 74, 356, 416
StyI	CCWWGG	1 cut(s)	265
TaaI	ACNGT	1 cut(s)	442
TaiI	ACGT	1 cut(s)	239
TaqI	TCGA	1 cut(s)	249
TasI	AATT	1 cut(s)	508
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	2 cut(s)	114, 141
TfiI	GAWTC	1 cut(s)	339
Tru1I	TTAA	2 cut(s)	26, 573
Tru9I	TTAA	2 cut(s)	26, 573
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	647
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	2 cut(s)	88, 118
Van91I	CCANNNNNTGG	1 cut(s)	70
XapI	RAATTY	1 cut(s)	508
XceI	RCATGY	2 cut(s)	157, 298
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.