Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008836

Physical Location & Seq

Genomic Coordinates Reverse (-)

7684110 .. 7687491

Gene Structure 3382 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0098100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAGCGTGACGTTGCAGTCGGTCTCTCTCTTAAACCCTAACCCTAGCTCTCGCTTCCAGAAGGCGGCGGCGGCGACGACGACTCCGGTAGCCTTGTGTTCTCGGCGGTTCGATCATTTCGTCGGTGCTCGCGGTTATGGAGGAGCTCCGGTTGCCGTTCCGAAGGGGCTCGGCTGTGGTGGCTCGCTGTCTCTGAGCCGGCGGAGCTTGTGGTGCCGGCCAATTGTAGCCGTTGCTGCCTCGCAAGATGAATCGAAGCATCCAGAGGTTGAGGTGGAGAAGGAAAAGGAAAGTGCCAAGTTGAAAGCTGAAGAATCAGAAGAAGCTTGGGAACAGACTTTGGCTTCTTTCAAAGAACAAGCTTTAAAGATGCAAAGTGTCTCACAGGAAGCGTATGAGATATATTCTAAGAAAGCCTTGGTTATTTTGAAGGAAACGTCAGAGCAGTTGAAAATACAGGCTGATAAGGCAAGGTATGATATCACTGAGATAGCTAAAGAGATCAGCGTTGAAGGTAAAGAATATATCTCCACAGCCGCAAAGAATTCCCCTGAACCAGTGAAGGAAATTGTTGAAACATTCAATTCATCAACAGACGATCTGAATGACGTCACAAAAATCCGCGACTTTCATGTTGGGATACCATATGGTCTGGTTCTTTCTCTTGGTGGCTTCCTTTCCTTCATGGTAACAGGAAGCACTGCTGGAATTAGGTTTGGGGTTATCCTTGGTGGCATTCTTTTGGCTTTCAGTGTTTCAAGTTTGAGATCATATAAGCAAGGAGAATCATTTCCTTTGGCCTTGAAAGGGCAGGCAGCTATAGCCAGTATAATTTTTCTGAGGGAGACATGCCTACTGGCTCAGAGATCATGGATTCCATATTTGTTGAGAACCCTTGTCAGTGGAGGTGTTGTAGCTTTCTATGTCTATAGGATTGTACAGAATGGTAAACACCATAAACACCAAAAAGATTCGAGCTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009856 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0022414 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0048856 GO:0048868 GO:0051704 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

328

Amino Acids

35.84

Weight (kDa)

8.71

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tmemb_14	PF03647	212 - 308	9.5e-13	Transmembrane proteins 14C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05590
malus_domestica	MD15G1398400.v1.1
rosa_chinensis	RchiOBHm_Chr5g0079581 RchiOBHm_Chr6g0274621 RchiOBHm_Chr7g0212741
rosa_multiflora	Rmu_sc0000595.1_g000005 Rmu_sc0000595.1_g000014 Rmu_sc0000631.1_g000034 Rmu_sc0001148.1_g000042 Rmu_sc0003131.1_g000018 Rmu_sc0003450.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110810 Rroxscaffold_3G00240350 Rroxscaffold_6G00412400 Rroxscaffold_7G00194710
rosa_rugosa	Rorug03G0098100
rosa_samantha	Rh7AG267900 Rh7CG286900 Rh7CG342200 Rh7DG321400
rosa_wichuraiana	Rw5G042570 Rw5G042580 Rw7G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	16
AatII	GACGTC	1 cut(s)	612
AccB1I	GGYRCC	1 cut(s)	213
AccII	CGCG	2 cut(s)	132, 624
AciI	CCGC	8 cut(s)	65, 68, 71, 106, 132, 202, 537, 622
AcoI	YGGCCR	1 cut(s)	218
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	1 cut(s)	330
AcyI	GRCGYC	1 cut(s)	609
AfaI	GTAC	1 cut(s)	939
AfiI	CCNNNNNNNGG	2 cut(s)	64, 807
Alw21I	GWGCWC	2 cut(s)	130, 148
Alw26I	GTCTC	4 cut(s)	28, 195, 385, 839
AoxI	GGCC	2 cut(s)	218, 798
ApeKI	GCWGC	2 cut(s)	236, 815
ApoI	RAATTY	1 cut(s)	544
Asp700I	GAANNNNTTC	1 cut(s)	789
BanI	GGYRCC	1 cut(s)	213
BanII	GRGCYC	2 cut(s)	148, 171
Bbv12I	GWGCWC	2 cut(s)	130, 148
BbvI	GCAGC	2 cut(s)	223, 827
BceAI	ACGGC	2 cut(s)	140, 215
BciVI	GTATCC	1 cut(s)	633
BcoDI	GTCTC	4 cut(s)	28, 195, 385, 839
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	2 cut(s)	819, 928
BfuI	GTATCC	1 cut(s)	633
BisI	GCNGC	6 cut(s)	66, 69, 72, 237, 537, 816
BlsI	GCNGC	6 cut(s)	67, 70, 73, 238, 538, 817
BmiI	GGNNCC	1 cut(s)	215
BmsI	GCATC	2 cut(s)	268, 360
BsaHI	GRCGYC	1 cut(s)	609
BsaI	GGTCTC	1 cut(s)	28
BsaJI	CCNNGG	2 cut(s)	417, 727
BsaWI	WCCGGW	2 cut(s)	85, 148
BsaXI	ACNNNNNCTCC	6 cut(s)	67, 97, 135, 165, 897, 927
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 807
Bse118I	RCCGGY	2 cut(s)	198, 216
Bse1I	ACTGG	3 cut(s)	557, 825, 861
BseDI	CCNNGG	2 cut(s)	417, 727
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	64, 807
BseMII	CTCAG	4 cut(s)	185, 477, 830, 875
BseNI	ACTGG	3 cut(s)	557, 825, 861
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	223, 827
Bsh1236I	CGCG	2 cut(s)	132, 624
BshFI	GGCC	2 cut(s)	220, 800
BshNI	GGYRCC	1 cut(s)	213
BsiHKAI	GWGCWC	2 cut(s)	130, 148
BsiSI	CCGG	4 cut(s)	86, 149, 199, 217
BslI	CCNNNNNNNGG	2 cut(s)	64, 807
BsmAI	GTCTC	4 cut(s)	28, 195, 385, 839
BsmI	GAATGC	1 cut(s)	735
BsnI	GGCC	2 cut(s)	220, 800
Bso31I	GGTCTC	1 cut(s)	28
Bsp1286I	GDGCHC	3 cut(s)	130, 148, 171
Bsp1407I	TGTACA	1 cut(s)	937
Bsp143I	GATC	5 cut(s)	112, 501, 598, 767, 866
BspACI	CCGC	8 cut(s)	65, 68, 71, 106, 132, 202, 537, 622
BspANI	GGCC	2 cut(s)	220, 800
BspCNI	CTCAG	4 cut(s)	186, 478, 831, 874
BspFNI	CGCG	2 cut(s)	132, 624
BspLI	GGNNCC	1 cut(s)	215
BspT107I	GGYRCC	1 cut(s)	213
BspTNI	GGTCTC	1 cut(s)	28
BsrFI	RCCGGY	2 cut(s)	198, 216
BsrGI	TGTACA	1 cut(s)	937
BsrI	ACTGG	3 cut(s)	557, 825, 861
BssAI	RCCGGY	2 cut(s)	198, 216
BssECI	CCNNGG	2 cut(s)	417, 727
BssMI	GATC	5 cut(s)	112, 501, 598, 767, 866
BssNI	GRCGYC	1 cut(s)	609
BssT1I	CCWWGG	2 cut(s)	417, 727
BstACI	GRCGYC	1 cut(s)	609
BstAUI	TGTACA	1 cut(s)	937
BstC8I	GCNNGC	5 cut(s)	130, 185, 200, 218, 813
BstDEI	CTNAG	5 cut(s)	194, 408, 486, 839, 861
BstF5I	GGATG	1 cut(s)	259
BstFNI	CGCG	2 cut(s)	132, 624
BstKTI	GATC	5 cut(s)	115, 504, 601, 770, 869
BstMAI	GTCTC	4 cut(s)	28, 195, 385, 839
BstMBI	GATC	5 cut(s)	112, 501, 598, 767, 866
BstMWI	GCNNNNNNNGC	8 cut(s)	71, 152, 180, 204, 213, 236, 467, 821
BstNSI	RCATGY	1 cut(s)	852
BstSFI	CTRYAG	2 cut(s)	819, 928
BstUI	CGCG	2 cut(s)	132, 624
BstV1I	GCAGC	2 cut(s)	223, 827
BsuI	GTATCC	1 cut(s)	633
BsuRI	GGCC	2 cut(s)	220, 800
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	699
BtsIMutI	CAGTG	5 cut(s)	483, 564, 699, 757, 907
Cac8I	GCNNGC	5 cut(s)	130, 185, 200, 218, 813
Cfr10I	RCCGGY	2 cut(s)	198, 216
Csp6I	GTAC	1 cut(s)	938
CviAII	CATG	4 cut(s)	632, 685, 849, 870
CviQI	GTAC	1 cut(s)	938
DdeI	CTNAG	5 cut(s)	194, 408, 486, 839, 861
DpnI	GATC	5 cut(s)	114, 503, 600, 769, 868
DpnII	GATC	5 cut(s)	112, 501, 598, 767, 866
DraI	TTTAAA	1 cut(s)	366
DrdI	GACNNNNNNGTC	1 cut(s)	16
DseDI	GACNNNNNNGTC	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	218
EciI	GGCGGA	1 cut(s)	217
Ecl136II	GAGCTC	1 cut(s)	146
Eco130I	CCWWGG	2 cut(s)	417, 727
Eco24I	GRGCYC	2 cut(s)	148, 171
Eco31I	GGTCTC	1 cut(s)	28
Eco32I	GATATC	1 cut(s)	481
Eco53kI	GAGCTC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	544
EcoRV	GATATC	1 cut(s)	481
EcoT14I	CCWWGG	2 cut(s)	417, 727
EcoT38I	GRGCYC	2 cut(s)	148, 171
ErhI	CCWWGG	2 cut(s)	417, 727
FaeI	CATG	4 cut(s)	635, 688, 852, 873
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FatI	CATG	4 cut(s)	631, 684, 848, 869
FauNDI	CATATG	1 cut(s)	646
Fnu4HI	GCNGC	6 cut(s)	66, 69, 72, 237, 537, 816
FokI	GGATG	1 cut(s)	246
FriOI	GRGCYC	2 cut(s)	148, 171
Fsp4HI	GCNGC	6 cut(s)	66, 69, 72, 237, 537, 816
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	6 cut(s)	66, 69, 72, 237, 537, 816
HaeIII	GGCC	2 cut(s)	220, 800
HapII	CCGG	4 cut(s)	86, 149, 199, 217
Hin1I	GRCGYC	1 cut(s)	609
Hin1II	CATG	4 cut(s)	635, 688, 852, 873
HindIII	AAGCTT	2 cut(s)	324, 360
HinfI	GANTC	6 cut(s)	82, 251, 314, 785, 874, 971
HpaII	CCGG	4 cut(s)	86, 149, 199, 217
Hpy166II	GTNNAC	1 cut(s)	950
Hpy188I	TCNGA	7 cut(s)	162, 195, 319, 442, 603, 840, 864
Hpy188III	TCNNGA	2 cut(s)	58, 263
Hpy8I	GTNNAC	1 cut(s)	950
Hpy99I	CGWCG	3 cut(s)	79, 82, 125
HpyAV	CCTTC	7 cut(s)	55, 157, 274, 424, 506, 556, 691
HpyCH4IV	ACGT	3 cut(s)	11, 437, 609
HpyCH4V	TGCA	2 cut(s)	16, 373
HpyF10VI	GCNNNNNNNGC	8 cut(s)	71, 152, 180, 204, 213, 236, 467, 821
HpyF3I	CTNAG	5 cut(s)	194, 408, 486, 839, 861
HpySE526I	ACGT	3 cut(s)	11, 437, 609
Hsp92I	GRCGYC	1 cut(s)	609
Hsp92II	CATG	4 cut(s)	635, 688, 852, 873
KroI	GCCGGC	2 cut(s)	198, 216
KroNI	GCCGGC	2 cut(s)	200, 218
Kzo9I	GATC	5 cut(s)	112, 501, 598, 767, 866
LmnI	GCTCC	3 cut(s)	143, 151, 204
Lsp1109I	GCAGC	2 cut(s)	223, 827
LweI	GCATC	2 cut(s)	268, 360
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	3 cut(s)	11, 437, 609
MaeIII	GTNAC	3 cut(s)	7, 610, 688
MalI	GATC	5 cut(s)	114, 503, 600, 769, 868
MboI	GATC	5 cut(s)	112, 501, 598, 767, 866
MboII	GAAGA	2 cut(s)	323, 332
MfeI	CAATTG	1 cut(s)	222
MhlI	GDGCHC	3 cut(s)	130, 148, 171
MluCI	AATT	6 cut(s)	222, 544, 567, 583, 708, 831
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	6 cut(s)	134, 250, 259, 265, 834, 899
MroNI	GCCGGC	2 cut(s)	198, 216
MroXI	GAANNNNTTC	1 cut(s)	789
MseI	TTAA	2 cut(s)	32, 365
MspI	CCGG	4 cut(s)	86, 149, 199, 217
MunI	CAATTG	1 cut(s)	222
Mva1269I	GAATGC	1 cut(s)	735
MvnI	CGCG	2 cut(s)	132, 624
MwoI	GCNNNNNNNGC	8 cut(s)	71, 152, 180, 204, 213, 236, 467, 821
NaeI	GCCGGC	2 cut(s)	200, 218
NdeI	CATATG	1 cut(s)	646
NdeII	GATC	5 cut(s)	112, 501, 598, 767, 866
NgoMIV	GCCGGC	2 cut(s)	198, 216
NlaIII	CATG	4 cut(s)	635, 688, 852, 873
NlaIV	GGNNCC	1 cut(s)	215
NmeAIII	GCCGAG	2 cut(s)	82, 150
NmuCI	GTSAC	2 cut(s)	7, 610
NspI	RCATGY	1 cut(s)	852
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PctI	GAATGC	1 cut(s)	735
PdiI	GCCGGC	2 cut(s)	200, 218
PdmI	GAANNNNTTC	1 cut(s)	789
PfeI	GAWTC	5 cut(s)	251, 314, 785, 874, 971
PkrI	GCNGC	6 cut(s)	67, 70, 73, 238, 538, 817
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp124BI	GAGCTC	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	215
RsaI	GTAC	1 cut(s)	939
RsaNI	GTAC	1 cut(s)	938
SacI	GAGCTC	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	32, 365
SatI	GCNGC	6 cut(s)	66, 69, 72, 237, 537, 816
Sau3AI	GATC	5 cut(s)	112, 501, 598, 767, 866
SchI	GAGTC	1 cut(s)	76
SduI	GDGCHC	3 cut(s)	130, 148, 171
SfaNI	GCATC	2 cut(s)	268, 360
SfcI	CTRYAG	2 cut(s)	819, 928
Sse9I	AATT	6 cut(s)	222, 544, 567, 583, 708, 831
SsiI	CCGC	8 cut(s)	65, 68, 71, 106, 132, 202, 537, 622
SspMI	CTAG	1 cut(s)	45
SstI	GAGCTC	1 cut(s)	148
StyI	CCWWGG	2 cut(s)	417, 727
TaiI	ACGT	3 cut(s)	14, 440, 612
TaqI	TCGA	3 cut(s)	111, 254, 974
TaqII	GACCGA	1 cut(s)	10
TasI	AATT	6 cut(s)	222, 544, 567, 583, 708, 831
TatI	WGTACW	1 cut(s)	937
TauI	GCSGC	4 cut(s)	68, 71, 74, 539
TfiI	GAWTC	5 cut(s)	251, 314, 785, 874, 971
Tru1I	TTAA	2 cut(s)	32, 365
Tru9I	TTAA	2 cut(s)	32, 365
TscAI	CASTG	5 cut(s)	490, 564, 706, 757, 907
TseFI	GTSAC	2 cut(s)	7, 610
TseI	GCWGC	2 cut(s)	236, 815
Tsp45I	GTSAC	2 cut(s)	7, 610
TspDTI	ATGAA	4 cut(s)	264, 576, 620, 673
TspRI	CASTG	5 cut(s)	490, 564, 706, 757, 907
XapI	RAATTY	1 cut(s)	544
XceI	RCATGY	1 cut(s)	852
XmnI	GAANNNNTTC	1 cut(s)	789
XspI	CTAG	1 cut(s)	45
ZraI	GACGTC	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.