FvH4_2g05590
WRKY Family

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0008836
Physical Location & Seq
Reverse (-)
4583669 .. 4585511
1843 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g05590.t1

Sequence Viewer

Length: 708 bp
ATGTGTAGCAACTTGTTGAATCCACTTCTTCCATCAAATTTGTTGCAGAGATTGCAAAATCTGGAAACACTATTGATTTCAGATGTGAAAAGTGTGGAGTATGTGTTTCGGTCGGAAGATTTTGGGCAAGAACCAATTCAGTTGAGAAAATTGAGAGAACTCAGATTGTGGTATCTACCGCAACTGGAAAACATATGGACCGGTCCTGTTCATTATGTAATCTTCCGTAATGTTCGAACTTTGCAAGTTCAAGGGTGCAACAAATTGAAATATATCTTCACATCCGAGATATCTCAAAGTCTCTTGCAATTGGAGGTGCTTACTGTCCAGTACTGTAGTTTTTTGGAAATGATCATTGGACCACCGGGCGAGGGAACTATAGTGAACAACATCATTTTGCCACAATTAAAGTACTTGCAGTTGGAACATCTTCCACAGATAACAAGCTTCTACACCGAAAATAACAGGATTGAGTGTCCCTCATTGCAAGTCTTAACTGTAAACAATTGCCCGCAGTTTCCAACCTCTACTTACGACTTCCACAGCAGGAACCCAGTCACAATCCAAGAGAAGGGAAGGTGGCATCCAGTGGTCTTGAAGAAAATGATGTTCAAATGGCATTCACTCTTTGGCAAGAATGTATATTTTGAGTTGGCTTTCAATTCATTTGTATTGGGGATTCATAATGTTATTGATGCACTTATTTAA

Protein Analysis

236

Amino Acids

27.44

Weight (kDa)

7.67

Isoelectric Point (pI)

60.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 2 - 112 1.3e-26 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 179, 512
AcsI RAATTY 1 cut(s) 37
AfaI GTAC 2 cut(s) 332, 413
AfiI CCNNNNNNNGG 2 cut(s) 371, 571
AgeI ACCGGT 1 cut(s) 200
AgsI TTSAA 6 cut(s) 19, 251, 268, 598, 613, 661
AjuI GAANNNNNNNTTGG 2 cut(s) 339, 371
AluBI AGCT 1 cut(s) 447
AluI AGCT 1 cut(s) 447
Alw26I GTCTC 1 cut(s) 305
ApoI RAATTY 1 cut(s) 37
AsiGI ACCGGT 1 cut(s) 200
Asp700I GAANNNNTTC 2 cut(s) 135, 429
AspS9I GGNCC 3 cut(s) 198, 203, 359
AsuC2I CCSGG 1 cut(s) 366
AsuII TTCGAA 1 cut(s) 235
AvaII GGWCC 3 cut(s) 198, 203, 359
BccI CCATC 1 cut(s) 40
BclI TGATCA 1 cut(s) 351
BcnI CCSGG 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 305
BfmI CTRYAG 2 cut(s) 334, 378
BmcAI AGTACT 2 cut(s) 332, 413
Bme1390I CCNGG 1 cut(s) 366
Bme18I GGWCC 3 cut(s) 198, 203, 359
BmgT120I GGNCC 3 cut(s) 198, 203, 359
BmiI GGNNCC 1 cut(s) 551
BmrFI CCNGG 1 cut(s) 366
BmrI ACTGGG 1 cut(s) 548
BmsI GCATC 2 cut(s) 592, 685
BmuI ACTGGG 1 cut(s) 548
BplI GAGNNNNNCTC 2 cut(s) 464, 496
Bpu14I TTCGAA 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 366
BsaWI WCCGGW 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 2 cut(s) 371, 571
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 4 cut(s) 189, 328, 554, 587
Bse3DI GCAATG 1 cut(s) 482
BseGI GGATG 2 cut(s) 281, 583
BseLI CCNNNNNNNGG 2 cut(s) 371, 571
BseMI GCAATG 1 cut(s) 482
BseMII CTCAG 1 cut(s) 175
BseNI ACTGG 4 cut(s) 189, 328, 554, 587
Bsh1285I CGRYCG 1 cut(s) 113
BshTI ACCGGT 1 cut(s) 200
BsiEI CGRYCG 1 cut(s) 113
BsiSI CCGG 2 cut(s) 201, 365
BslFI GGGAC 1 cut(s) 462
BslI CCNNNNNNNGG 2 cut(s) 371, 571
BsmAI GTCTC 1 cut(s) 305
BsmFI GGGAC 1 cut(s) 462
BsmI GAATGC 1 cut(s) 619
Bsp119I TTCGAA 1 cut(s) 235
Bsp143I GATC 1 cut(s) 351
BspACI CCGC 2 cut(s) 179, 512
BspCNI CTCAG 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 551
BspT104I TTCGAA 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 482
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 4 cut(s) 189, 328, 554, 587
BssAI RCCGGY 1 cut(s) 200
BssMI GATC 1 cut(s) 351
Bst4CI ACNGT 3 cut(s) 325, 335, 499
BstAPI GCANNNNNTGC 1 cut(s) 52
BstBI TTCGAA 1 cut(s) 235
BstC8I GCNNGC 1 cut(s) 512
BstDEI CTNAG 1 cut(s) 161
BstF5I GGATG 2 cut(s) 281, 583
BstKTI GATC 1 cut(s) 354
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 1 cut(s) 351
BstMCI CGRYCG 1 cut(s) 113
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 364
BstSFI CTRYAG 2 cut(s) 334, 378
BtsCI GGATG 2 cut(s) 281, 583
BtsIMutI CAGTG 1 cut(s) 594
Cac8I GCNNGC 1 cut(s) 512
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 3 cut(s) 198, 203, 359
Csp6I GTAC 2 cut(s) 331, 412
CspAI ACCGGT 1 cut(s) 200
CviJI RGCY 2 cut(s) 447, 656
CviKI_1 RGCY 2 cut(s) 447, 656
CviQI GTAC 2 cut(s) 331, 412
DdeI CTNAG 1 cut(s) 161
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
Eco32I GATATC 1 cut(s) 291
Eco47I GGWCC 3 cut(s) 198, 203, 359
EcoRV GATATC 1 cut(s) 291
FaiI YATR 8 cut(s) 102, 194, 196, 216, 273, 380, 643, 684
FaqI GGGAC 1 cut(s) 462
FauI CCCGC 1 cut(s) 519
FauNDI CATATG 1 cut(s) 194
FbaI TGATCA 1 cut(s) 351
FokI GGATG 2 cut(s) 268, 570
HapII CCGG 2 cut(s) 201, 365
HindIII AAGCTT 1 cut(s) 445
HinfI GANTC 2 cut(s) 19, 679
HpaII CCGG 2 cut(s) 201, 365
Hpy166II GTNNAC 2 cut(s) 385, 502
Hpy188I TCNGA 4 cut(s) 82, 115, 164, 286
Hpy188III TCNNGA 2 cut(s) 62, 595
Hpy8I GTNNAC 2 cut(s) 385, 502
HpyAV CCTTC 2 cut(s) 565, 570
HpyCH4III ACNGT 3 cut(s) 325, 335, 499
HpyCH4V TGCA 8 cut(s) 46, 55, 244, 258, 307, 418, 487, 698
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 1 cut(s) 161
Ksp22I TGATCA 1 cut(s) 351
Kzo9I GATC 1 cut(s) 351
LweI GCATC 2 cut(s) 592, 685
MaeIII GTNAC 1 cut(s) 556
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 6 cut(s) 20, 128, 214, 268, 422, 610
MfeI CAATTG 2 cut(s) 308, 505
MluCI AATT 8 cut(s) 37, 135, 149, 263, 308, 404, 505, 661
MmeI TCCRAC 3 cut(s) 93, 402, 545
MnlI CCTC 4 cut(s) 307, 364, 490, 535
MroXI GAANNNNTTC 2 cut(s) 135, 429
MseI TTAA 3 cut(s) 407, 494, 706
MspI CCGG 2 cut(s) 201, 365
MspR9I CCNGG 1 cut(s) 366
MunI CAATTG 2 cut(s) 308, 505
Mva1269I GAATGC 1 cut(s) 619
MwoI GCNNNNNNNGC 1 cut(s) 52
NciI CCSGG 1 cut(s) 366
NdeI CATATG 1 cut(s) 194
NdeII GATC 1 cut(s) 351
NlaIV GGNNCC 1 cut(s) 551
NmuCI GTSAC 1 cut(s) 556
NspV TTCGAA 1 cut(s) 235
PctI GAATGC 1 cut(s) 619
PdmI GAANNNNTTC 2 cut(s) 135, 429
PfeI GAWTC 2 cut(s) 19, 679
PinAI ACCGGT 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 551
PspPI GGNCC 3 cut(s) 198, 203, 359
RsaI GTAC 2 cut(s) 332, 413
RsaNI GTAC 2 cut(s) 331, 412
SaqAI TTAA 3 cut(s) 407, 494, 706
Sau3AI GATC 1 cut(s) 351
Sau96I GGNCC 3 cut(s) 198, 203, 359
ScaI AGTACT 2 cut(s) 332, 413
ScrFI CCNGG 1 cut(s) 366
SetI ASST 4 cut(s) 318, 449, 527, 581
SfaNI GCATC 2 cut(s) 592, 685
SfcI CTRYAG 2 cut(s) 334, 378
SfuI TTCGAA 1 cut(s) 235
SinI GGWCC 3 cut(s) 198, 203, 359
Sse9I AATT 8 cut(s) 37, 135, 149, 263, 308, 404, 505, 661
SsiI CCGC 2 cut(s) 179, 512
StyD4I CCNGG 1 cut(s) 364
TaaI ACNGT 3 cut(s) 325, 335, 499
TaqI TCGA 1 cut(s) 235
TaqII GACCGA 1 cut(s) 99
TasI AATT 8 cut(s) 37, 135, 149, 263, 308, 404, 505, 661
TatI WGTACW 2 cut(s) 330, 411
TfiI GAWTC 2 cut(s) 19, 679
Tru1I TTAA 3 cut(s) 407, 494, 706
Tru9I TTAA 3 cut(s) 407, 494, 706
TscAI CASTG 1 cut(s) 594
TseFI GTSAC 1 cut(s) 556
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 3 cut(s) 200, 654, 671
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 1 cut(s) 594
VpaK11BI GGWCC 3 cut(s) 198, 203, 359
XapI RAATTY 1 cut(s) 37
XmnI GAANNNNTTC 2 cut(s) 135, 429
ZrmI AGTACT 2 cut(s) 332, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.