Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008836

Physical Location & Seq

Genomic Coordinates Forward (+)

27877544 .. 27882568

Gene Structure 5025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG267900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTCACCTCCGCCCAATCGAGTCCCTTATCCAAATACTGCCTCAAAAAATGTGCACTTGTTTTTAATTGGGTCTCTAAAACATCAAACAAGACCGGGCAATCTATTTGGCACACCCCTATCAGCATGGGATACTCTCATCAAGTCACGTCTCAAGGTCGGGGAAAAGATCTTAACATCGATGGAGCCTGAAATGATGCAGAGGGCGGTTGAATTCACGGGGAAGATGTCTCAAATCATACAGACGAAGCCCGAATTTGCAAAGAAGTTTTTACCTAGTTCGTTAGCGAAGCCTGAATTGTTGGAGATGATGCCTAGACTGATGGAGTTGCTGAATGGAAGTTTGACAGAGAAGAATCCTGAATCGATGGAGAATCTTATAGCGTTGGCGAATATCACTCCTGATCTGATGAATCATATACCTGCTGAGATTAGTGAGATGATGGATCTGACGACTAAATTGATGGAGGATACGAACTTTATCAAGTCCTTGACTGGAATCGTGGAGAACATCCCTGGAATCATGAACTTGCCTCGAATCATAGAGGACTTTCCTCGATTGTTTGAGATTTTGCCAATGACTGGATCGGTGGAGAATATGCCTGGAATCATGGAGGACTTTGCTCAATTGATTGAGAATTCGCCTCAGATGGCTGAATCGTTGAAGGACTTTGCTCAATCGGTTGAGAATTTTCTGAATTTGCCTCAAATGACTGAATGGATGGGAATCATGGAGAACTTATCTCAGATGACTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

252

Amino Acids

28.45

Weight (kDa)

4.87

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05590
malus_domestica	MD15G1398400.v1.1
rosa_chinensis	RchiOBHm_Chr5g0079581 RchiOBHm_Chr6g0274621 RchiOBHm_Chr7g0212741
rosa_multiflora	Rmu_sc0000595.1_g000005 Rmu_sc0000595.1_g000014 Rmu_sc0000631.1_g000034 Rmu_sc0001148.1_g000042 Rmu_sc0003131.1_g000018 Rmu_sc0003450.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110810 Rroxscaffold_3G00240350 Rroxscaffold_6G00412400 Rroxscaffold_7G00194710
rosa_rugosa	Rorug03G0098100
rosa_samantha	Rh7AG267900 Rh7CG286900 Rh7CG342200 Rh7DG321400
rosa_wichuraiana	Rw5G042570 Rw5G042580 Rw7G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	430
AccB7I	CCANNNNNTGG	1 cut(s)	581
AciI	CCGC	2 cut(s)	11, 206
AclWI	GGATC	2 cut(s)	453, 592
AcsI	RAATTY	5 cut(s)	212, 254, 637, 688, 697
AfiI	CCNNNNNNNGG	1 cut(s)	581
AgsI	TTSAA	2 cut(s)	212, 664
AjiI	CACGTC	1 cut(s)	149
AjnI	CCWGG	2 cut(s)	514, 601
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	3 cut(s)	78, 155, 234
Alw44I	GTGCAC	1 cut(s)	53
AlwI	GGATC	2 cut(s)	453, 592
ApaLI	GTGCAC	1 cut(s)	53
ApoI	RAATTY	5 cut(s)	212, 254, 637, 688, 697
AsuC2I	CCSGG	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	57
BccI	CCATC	7 cut(s)	175, 316, 361, 436, 457, 643, 715
BciT130I	CCWGG	2 cut(s)	516, 603
BciVI	GTATCC	2 cut(s)	124, 463
BcnI	CCSGG	1 cut(s)	96
BcoDI	GTCTC	3 cut(s)	78, 155, 234
BfaI	CTAG	2 cut(s)	276, 315
BfuAI	ACCTGC	1 cut(s)	430
BfuI	GTATCC	2 cut(s)	124, 463
BglII	AGATCT	1 cut(s)	168
Bme1390I	CCNGG	3 cut(s)	96, 516, 603
BmgBI	CACGTC	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	3 cut(s)	96, 516, 603
BmsI	GCATC	2 cut(s)	186, 300
BpuEI	CTTGAG	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	96
Bsa29I	ATCGAT	2 cut(s)	179, 365
BsaBI	GATNNNNATC	1 cut(s)	725
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	514
Bsc4I	CCNNNNNNNGG	1 cut(s)	581
Bse1I	ACTGG	2 cut(s)	499, 586
Bse8I	GATNNNNATC	1 cut(s)	725
BseBI	CCWGG	2 cut(s)	516, 603
BseCI	ATCGAT	2 cut(s)	179, 365
BseDI	CCNNGG	1 cut(s)	514
BseGI	GGATG	2 cut(s)	510, 726
BseJI	GATNNNNATC	1 cut(s)	725
BseLI	CCNNNNNNNGG	1 cut(s)	581
BseMII	CTCAG	3 cut(s)	417, 659, 758
BseNI	ACTGG	2 cut(s)	499, 586
BseSI	GKGCMC	1 cut(s)	57
BshVI	ATCGAT	2 cut(s)	179, 365
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	581
BsmAI	GTCTC	3 cut(s)	78, 155, 234
BsmBI	CGTCTC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	8
Bso31I	GGTCTC	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	4 cut(s)	168, 403, 445, 584
BspACI	CCGC	2 cut(s)	11, 206
BspCNI	CTCAG	3 cut(s)	418, 658, 757
BspDI	ATCGAT	2 cut(s)	179, 365
BspHI	TCATGA	1 cut(s)	522
BspLI	GGNNCC	1 cut(s)	186
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	2 cut(s)	453, 592
BspTNI	GGTCTC	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	499, 586
BssECI	CCNNGG	1 cut(s)	514
BssMI	GATC	4 cut(s)	168, 403, 445, 584
Bst2UI	CCWGG	2 cut(s)	516, 603
BstDEI	CTNAG	3 cut(s)	426, 645, 744
BstF5I	GGATG	2 cut(s)	510, 726
BstKTI	GATC	4 cut(s)	171, 406, 448, 587
BstMAI	GTCTC	3 cut(s)	78, 155, 234
BstMBI	GATC	4 cut(s)	168, 403, 445, 584
BstNI	CCWGG	2 cut(s)	516, 603
BstSCI	CCNGG	3 cut(s)	94, 514, 601
BstSLI	GKGCMC	1 cut(s)	57
BstX2I	RGATCY	2 cut(s)	168, 445
BstYI	RGATCY	2 cut(s)	168, 445
Bsu15I	ATCGAT	2 cut(s)	179, 365
BsuI	GTATCC	2 cut(s)	124, 463
BsuTUI	ATCGAT	2 cut(s)	179, 365
BtrI	CACGTC	1 cut(s)	149
BtsCI	GGATG	2 cut(s)	510, 726
BveI	ACCTGC	1 cut(s)	430
CciI	TCATGA	1 cut(s)	522
ClaI	ATCGAT	2 cut(s)	179, 365
CviAII	CATG	4 cut(s)	126, 523, 610, 730
CviJI	RGCY	4 cut(s)	187, 250, 292, 653
CviKI_1	RGCY	4 cut(s)	187, 250, 292, 653
DdeI	CTNAG	3 cut(s)	426, 645, 744
DpnI	GATC	4 cut(s)	170, 405, 447, 586
DpnII	GATC	4 cut(s)	168, 403, 445, 584
Eco31I	GGTCTC	1 cut(s)	78
EcoRI	GAATTC	2 cut(s)	212, 637
EcoRII	CCWGG	2 cut(s)	514, 601
Esp3I	CGTCTC	1 cut(s)	155
FaeI	CATG	4 cut(s)	129, 526, 613, 733
FaqI	GGGAC	1 cut(s)	8
FatI	CATG	4 cut(s)	125, 522, 609, 729
FokI	GGATG	2 cut(s)	497, 733
FspBI	CTAG	2 cut(s)	276, 315
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	4 cut(s)	129, 526, 613, 733
HpaII	CCGG	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	5 cut(s)	408, 450, 648, 696, 747
Hpy188III	TCNNGA	3 cut(s)	359, 401, 523
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	658
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	3 cut(s)	55, 199, 260
HpyF3I	CTNAG	3 cut(s)	426, 645, 744
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	4 cut(s)	129, 526, 613, 733
Kzo9I	GATC	4 cut(s)	168, 403, 445, 584
LmnI	GCTCC	1 cut(s)	184
LweI	GCATC	2 cut(s)	186, 300
MaeI	CTAG	2 cut(s)	276, 315
MaeII	ACGT	1 cut(s)	148
MaeIII	GTNAC	2 cut(s)	3, 144
MalI	GATC	4 cut(s)	170, 405, 447, 586
MboI	GATC	4 cut(s)	168, 403, 445, 584
MboII	GAAGA	2 cut(s)	235, 364
MfeI	CAATTG	1 cut(s)	626
MflI	RGATCY	2 cut(s)	168, 445
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	9 cut(s)	66, 212, 254, 296, 458, 626, 637, 688, 697
MlyI	GAGTC	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	282
MseI	TTAA	2 cut(s)	65, 173
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	3 cut(s)	96, 516, 603
MunI	CAATTG	1 cut(s)	626
MvaI	CCWGG	2 cut(s)	516, 603
NciI	CCSGG	1 cut(s)	96
NdeII	GATC	4 cut(s)	168, 403, 445, 584
NlaIII	CATG	4 cut(s)	129, 526, 613, 733
NlaIV	GGNNCC	1 cut(s)	186
NmuCI	GTSAC	2 cut(s)	3, 144
PagI	TCATGA	1 cut(s)	522
PflMI	CCANNNNNTGG	1 cut(s)	581
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
Psp6I	CCWGG	2 cut(s)	514, 601
PspGI	CCWGG	2 cut(s)	514, 601
PspN4I	GGNNCC	1 cut(s)	186
PsuI	RGATCY	2 cut(s)	168, 445
SaqAI	TTAA	2 cut(s)	65, 173
Sau3AI	GATC	4 cut(s)	168, 403, 445, 584
SchI	GAGTC	1 cut(s)	30
ScrFI	CCNGG	3 cut(s)	96, 516, 603
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	5 cut(s)	10, 151, 159, 277, 424
SfaNI	GCATC	2 cut(s)	186, 300
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	9 cut(s)	66, 212, 254, 296, 458, 626, 637, 688, 697
SsiI	CCGC	2 cut(s)	11, 206
SspMI	CTAG	2 cut(s)	276, 315
StyD4I	CCNGG	3 cut(s)	94, 514, 601
TaiI	ACGT	1 cut(s)	151
TaqI	TCGA	5 cut(s)	19, 179, 365, 535, 556
TasI	AATT	9 cut(s)	66, 212, 254, 296, 458, 626, 637, 688, 697
Tru1I	TTAA	2 cut(s)	65, 173
Tru9I	TTAA	2 cut(s)	65, 173
TseFI	GTSAC	2 cut(s)	3, 144
Tsp45I	GTSAC	2 cut(s)	3, 144
TspDTI	ATGAA	2 cut(s)	425, 539
Van91I	CCANNNNNTGG	1 cut(s)	581
VneI	GTGCAC	1 cut(s)	53
XapI	RAATTY	5 cut(s)	212, 254, 637, 688, 697
XspI	CTAG	2 cut(s)	276, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.