Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003131.1

Orthogroup ID

OG0008836

Physical Location & Seq

Genomic Coordinates Reverse (-)

94978 .. 95361

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003131.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgtggttgaatgtctttttcagttggaagacctttccacatatagagcgctgtcctagcttggacagagtcattgaagcaagctatagcttgaacagcaagattaaacttcccacattgaagaagttagctttgatagatcttccgtcgctcacaaggttctgcactgaaagtgatactattgaaactgagtgcccttcattggaatacttgtacttggtggagaagtgcttccagttttcatattttgcttaccacttcgacaacaagaaccaagttgttagtataggtacttgtattgttggcattccctatgcaaaactactgagtcctaggttaagaattgtacttgagaagaatgaaattgaagtccaagattggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

127

Amino Acids

14.89

Weight (kDa)

6.1

Isoelectric Point (pI)

53.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05590
malus_domestica	MD15G1398400.v1.1
rosa_chinensis	RchiOBHm_Chr5g0079581 RchiOBHm_Chr6g0274621 RchiOBHm_Chr7g0212741
rosa_multiflora	Rmu_sc0000595.1_g000005 Rmu_sc0000595.1_g000014 Rmu_sc0000631.1_g000034 Rmu_sc0001148.1_g000042 Rmu_sc0003131.1_g000018 Rmu_sc0003450.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110810 Rroxscaffold_3G00240350 Rroxscaffold_6G00412400 Rroxscaffold_7G00194710
rosa_rugosa	Rorug03G0098100
rosa_samantha	Rh7AG267900 Rh7CG286900 Rh7CG342200 Rh7DG321400
rosa_wichuraiana	Rw5G042570 Rw5G042580 Rw7G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	3 cut(s)	215, 292, 348
AfeI	AGCGCT	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	202
AgsI	TTSAA	6 cut(s)	10, 77, 94, 121, 185, 368
AluBI	AGCT	4 cut(s)	60, 84, 90, 131
AluI	AGCT	4 cut(s)	60, 84, 90, 131
Aor51HI	AGCGCT	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	230
AspA2I	CCTAGG	1 cut(s)	332
AspLEI	GCGC	1 cut(s)	51
AvrII	CCTAGG	1 cut(s)	332
BaeGI	GKGCMC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	35
BfaI	CTAG	2 cut(s)	57, 333
BfmI	CTRYAG	1 cut(s)	85
BfoI	RGCGCY	1 cut(s)	52
BglII	AGATCT	1 cut(s)	139
BlnI	CCTAGG	1 cut(s)	332
BpiI	GAAGAC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	332
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMII	CTCAG	2 cut(s)	180, 317
BseNI	ACTGG	1 cut(s)	235
BseSI	GKGCMC	1 cut(s)	197
BsgI	GTGCAG	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmI	GAATGC	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	139
BspCNI	CTCAG	2 cut(s)	181, 318
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	332
BssMI	GATC	1 cut(s)	139
BssT1I	CCWWGG	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	2 cut(s)	189, 326
BstH2I	RGCGCY	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 96
BstSFI	CTRYAG	1 cut(s)	85
BstSLI	GKGCMC	1 cut(s)	197
BstV2I	GAAGAC	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	1 cut(s)	82
CfoI	GCGC	1 cut(s)	51
Csp6I	GTAC	3 cut(s)	214, 291, 347
CviJI	RGCY	4 cut(s)	60, 84, 90, 131
CviKI_1	RGCY	4 cut(s)	60, 84, 90, 131
CviQI	GTAC	3 cut(s)	214, 291, 347
DdeI	CTNAG	2 cut(s)	189, 326
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	332
Eco47III	AGCGCT	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	332
ErhI	CCWWGG	1 cut(s)	332
FaiI	YATR	6 cut(s)	42, 44, 87, 244, 287, 315
FspBI	CTAG	2 cut(s)	57, 333
GlaI	GCGC	1 cut(s)	50
HaeII	RGCGCY	1 cut(s)	52
HhaI	GCGC	1 cut(s)	51
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HinfI	GANTC	2 cut(s)	69, 328
Hpy99I	CGWCG	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	207
HpyCH4V	TGCA	2 cut(s)	165, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 96
HpyF3I	CTNAG	2 cut(s)	189, 326
HspAI	GCGC	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	139
LpnPI	CCDG	1 cut(s)	248
MaeI	CTAG	2 cut(s)	57, 333
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	4 cut(s)	40, 133, 134, 367
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	2 cut(s)	342, 363
MlyI	GAGTC	2 cut(s)	78, 337
MmeI	TCCRAC	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	230
MseI	TTAA	2 cut(s)	105, 338
Mva1269I	GAATGC	1 cut(s)	306
MwoI	GCNNNNNNNGC	2 cut(s)	57, 96
NdeII	GATC	1 cut(s)	139
PctI	GAATGC	1 cut(s)	306
PdmI	GAANNNNTTC	1 cut(s)	230
PflFI	GACNNNGTC	1 cut(s)	68
PleI	GAGTC	2 cut(s)	77, 336
PpsI	GAGTC	2 cut(s)	77, 336
PsuI	RGATCY	1 cut(s)	139
PsyI	GACNNNGTC	1 cut(s)	68
RsaI	GTAC	3 cut(s)	215, 292, 348
RsaNI	GTAC	3 cut(s)	214, 291, 347
SaqAI	TTAA	2 cut(s)	105, 338
Sau3AI	GATC	1 cut(s)	139
SchI	GAGTC	2 cut(s)	78, 337
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	8 cut(s)	35, 62, 86, 92, 133, 161, 292, 338
SfcI	CTRYAG	1 cut(s)	85
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	2 cut(s)	342, 363
SspMI	CTAG	2 cut(s)	57, 333
StyI	CCWWGG	1 cut(s)	332
TaqI	TCGA	1 cut(s)	261
TasI	AATT	2 cut(s)	342, 363
TatI	WGTACW	2 cut(s)	213, 346
Tru1I	TTAA	2 cut(s)	105, 338
Tru9I	TTAA	2 cut(s)	105, 338
TscAI	CASTG	1 cut(s)	172
TspDTI	ATGAA	3 cut(s)	189, 231, 375
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	172
Tth111I	GACNNNGTC	1 cut(s)	68
XmaJI	CCTAGG	1 cut(s)	332
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	2 cut(s)	57, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.