Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001148.1

Orthogroup ID

OG0008836

Physical Location & Seq

Genomic Coordinates Forward (+)

170146 .. 170658

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001148.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atggatgaattggaatatgtgtttggatgcgaagggttagagccgatacaatcaaaactgagagagatgcatttgttgggtccaaattcagtgaaaagcatttgtagcggtcctgtcccacgtgcagtgttccagagtcttaaaagtttgaccatttaccgttgcgagctgctgcaaagtctgttcgcatctgatgtagccaactgtcttgttcaattggaagaccttttagtagacaggtgccctttgttggaaagattaattgaagcagtgaacaacgagaagattacggttctttcaaaattaaagaatatggttttgaagaatcttcctgtgttgaatggtgcaagtgctactgttgatattgagtgtccttcattggaacgcttgactgtggaggaatgcccccagttttcaacctctgcttccaactactttggcagtaggaacccagtcaaactcaatgatccacaactacaccgcttcctatatgaaaggcatgtctctgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

170

Amino Acids

19.08

Weight (kDa)

5.43

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05590
malus_domestica	MD15G1398400.v1.1
rosa_chinensis	RchiOBHm_Chr5g0079581 RchiOBHm_Chr6g0274621 RchiOBHm_Chr7g0212741
rosa_multiflora	Rmu_sc0000595.1_g000005 Rmu_sc0000595.1_g000014 Rmu_sc0000631.1_g000034 Rmu_sc0001148.1_g000042 Rmu_sc0003131.1_g000018 Rmu_sc0003450.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110810 Rroxscaffold_3G00240350 Rroxscaffold_6G00412400 Rroxscaffold_7G00194710
rosa_rugosa	Rorug03G0098100
rosa_samantha	Rh7AG267900 Rh7CG286900 Rh7CG342200 Rh7DG321400
rosa_wichuraiana	Rw5G042570 Rw5G042580 Rw7G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	240
AccI	GTMKAC	1 cut(s)	234
AciI	CCGC	2 cut(s)	108, 481
AclWI	GGATC	1 cut(s)	461
AcsI	RAATTY	1 cut(s)	85
AcvI	CACGTG	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	250
AgsI	TTSAA	6 cut(s)	215, 266, 300, 322, 340, 417
AjuI	GAANNNNNNNTTGG	1 cut(s)	38
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw26I	GTCTC	1 cut(s)	508
AlwI	GGATC	1 cut(s)	461
ApeKI	GCWGC	2 cut(s)	169, 172
ApoI	RAATTY	1 cut(s)	85
AseI	ATTAAT	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	80, 110
AvaII	GGWCC	2 cut(s)	80, 110
BaeGI	GKGCMC	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	240
BbrPI	CACGTG	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	156, 159
BcoDI	GTCTC	1 cut(s)	508
BisI	GCNGC	2 cut(s)	170, 173
BlsI	GCNGC	2 cut(s)	171, 174
Bme18I	GGWCC	2 cut(s)	80, 110
BmgT120I	GGNCC	2 cut(s)	80, 110
BmiI	GGNNCC	3 cut(s)	81, 242, 449
BmrI	ACTGGG	2 cut(s)	403, 446
BmsI	GCATC	3 cut(s)	17, 57, 197
BmuI	ACTGGG	2 cut(s)	403, 446
BpiI	GAAGAC	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse1I	ACTGG	2 cut(s)	409, 452
BseGI	GGATG	2 cut(s)	10, 32
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	2 cut(s)	409, 452
BseSI	GKGCMC	1 cut(s)	245
BseXI	GCAGC	2 cut(s)	156, 159
BsgI	GTGCAG	1 cut(s)	144
BshNI	GGYRCC	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	508
BsmFI	GGGAC	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	1 cut(s)	466
BspACI	CCGC	2 cut(s)	108, 481
BspCNI	CTCAG	1 cut(s)	51
BspLI	GGNNCC	3 cut(s)	81, 242, 449
BspPI	GGATC	1 cut(s)	461
BspT107I	GGYRCC	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	409, 452
BssMI	GATC	1 cut(s)	466
Bst4CI	ACNGT	5 cut(s)	161, 206, 292, 358, 394
BstBAI	YACGTR	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	1 cut(s)	59
BstF5I	GGATG	2 cut(s)	10, 32
BstKTI	GATC	1 cut(s)	469
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	1 cut(s)	466
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNSI	RCATGY	1 cut(s)	503
BstSLI	GKGCMC	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	156, 159
BstV2I	GAAGAC	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	10, 32
BtsI	GCAGTG	2 cut(s)	132, 276
BtsIMutI	CAGTG	3 cut(s)	96, 132, 276
Cac8I	GCNNGC	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	80, 110
CviAII	CATG	1 cut(s)	500
CviJI	RGCY	3 cut(s)	43, 169, 200
CviKI_1	RGCY	3 cut(s)	43, 169, 200
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	1 cut(s)	468
DpnII	GATC	1 cut(s)	466
Eco47I	GGWCC	2 cut(s)	80, 110
Eco72I	CACGTG	1 cut(s)	122
EcoT22I	ATGCAT	1 cut(s)	72
FaeI	CATG	1 cut(s)	503
FaiI	YATR	5 cut(s)	18, 314, 490, 492, 501
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	1 cut(s)	499
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	170, 173
FokI	GGATG	2 cut(s)	17, 39
Fsp4HI	GCNGC	2 cut(s)	170, 173
GluI	GCNGC	2 cut(s)	170, 173
Hin1II	CATG	1 cut(s)	503
HinfI	GANTC	2 cut(s)	136, 325
Hpy166II	GTNNAC	2 cut(s)	235, 274
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	2 cut(s)	235, 274
HpyAV	CCTTC	2 cut(s)	26, 384
HpyCH4III	ACNGT	5 cut(s)	161, 206, 292, 358, 394
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	4 cut(s)	70, 125, 175, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	1 cut(s)	59
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	1 cut(s)	503
Kzo9I	GATC	1 cut(s)	466
LpnPI	CCDG	6 cut(s)	126, 146, 223, 345, 422, 465
Lsp1109I	GCAGC	2 cut(s)	156, 159
LweI	GCATC	3 cut(s)	17, 57, 197
MaeII	ACGT	1 cut(s)	121
MalI	GATC	1 cut(s)	468
MboI	GATC	1 cut(s)	466
MboII	GAAGA	4 cut(s)	233, 295, 320, 334
MfeI	CAATTG	1 cut(s)	215
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	5 cut(s)	8, 85, 215, 261, 302
MlyI	GAGTC	1 cut(s)	145
MmeI	TCCRAC	2 cut(s)	231, 453
MnlI	CCTC	2 cut(s)	391, 430
Mph1103I	ATGCAT	1 cut(s)	72
MseI	TTAA	3 cut(s)	141, 260, 305
MunI	CAATTG	1 cut(s)	215
Mva1269I	GAATGC	1 cut(s)	407
MwoI	GCNNNNNNNGC	1 cut(s)	105
NdeII	GATC	1 cut(s)	466
NlaIII	CATG	1 cut(s)	503
NlaIV	GGNNCC	3 cut(s)	81, 242, 449
NsiI	ATGCAT	1 cut(s)	72
NspI	RCATGY	1 cut(s)	503
PctI	GAATGC	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	171, 174
PleI	GAGTC	1 cut(s)	144
PmaCI	CACGTG	1 cut(s)	122
PmlI	CACGTG	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	144
Ppu21I	YACGTR	1 cut(s)	122
PshBI	ATTAAT	1 cut(s)	260
PspCI	CACGTG	1 cut(s)	122
PspN4I	GGNNCC	3 cut(s)	81, 242, 449
PspPI	GGNCC	2 cut(s)	80, 110
SaqAI	TTAA	3 cut(s)	141, 260, 305
SatI	GCNGC	2 cut(s)	170, 173
Sau3AI	GATC	1 cut(s)	466
Sau96I	GGNCC	2 cut(s)	80, 110
SchI	GAGTC	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	245
SetI	ASST	5 cut(s)	124, 171, 228, 242, 422
SfaNI	GCATC	3 cut(s)	17, 57, 197
SinI	GGWCC	2 cut(s)	80, 110
Sse9I	AATT	5 cut(s)	8, 85, 215, 261, 302
SsiI	CCGC	2 cut(s)	108, 481
TaaI	ACNGT	5 cut(s)	161, 206, 292, 358, 394
TaiI	ACGT	1 cut(s)	124
TasI	AATT	5 cut(s)	8, 85, 215, 261, 302
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	3 cut(s)	141, 260, 305
Tru9I	TTAA	3 cut(s)	141, 260, 305
TscAI	CASTG	3 cut(s)	96, 132, 276
TseI	GCWGC	2 cut(s)	169, 172
TspDTI	ATGAA	3 cut(s)	21, 366, 507
TspRI	CASTG	3 cut(s)	96, 132, 276
VpaK11BI	GGWCC	2 cut(s)	80, 110
VspI	ATTAAT	1 cut(s)	260
XapI	RAATTY	1 cut(s)	85
XceI	RCATGY	1 cut(s)	503
XmiI	GTMKAC	1 cut(s)	234
Zsp2I	ATGCAT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.