Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003450.1

Orthogroup ID

OG0008836

Physical Location & Seq

Genomic Coordinates Reverse (-)

9498 .. 9836

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003450.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgaagctgattgttctaggggcactaataagcatatggaaagatcctgctccagatgcaattttccataatcttaaaagtttggaagtttatgaatgcacaaaactgagaagtctcttctccttggatgtagcgcaatgtcttttccaattggaagacctttcggttgagagctgtagtagcttggatagagttattgaagcaagcgaggcaacagagaataagaagattgttcttccagaactgaaggacctacttttgaaagatcttccagagctcacaagattctgtggtagtactactggaagtcttactattgttattcagtgcccttcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

112

Amino Acids

12.41

Weight (kDa)

4.77

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05590
malus_domestica	MD15G1398400.v1.1
rosa_chinensis	RchiOBHm_Chr5g0079581 RchiOBHm_Chr6g0274621 RchiOBHm_Chr7g0212741
rosa_multiflora	Rmu_sc0000595.1_g000005 Rmu_sc0000595.1_g000014 Rmu_sc0000631.1_g000034 Rmu_sc0001148.1_g000042 Rmu_sc0003131.1_g000018 Rmu_sc0003450.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110810 Rroxscaffold_3G00240350 Rroxscaffold_6G00412400 Rroxscaffold_7G00194710
rosa_rugosa	Rorug03G0098100
rosa_samantha	Rh7AG267900 Rh7CG286900 Rh7CG342200 Rh7DG321400
rosa_wichuraiana	Rw5G042570 Rw5G042580 Rw7G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	38
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	1 cut(s)	298
AgsI	TTSAA	2 cut(s)	200, 262
AluBI	AGCT	4 cut(s)	7, 174, 183, 277
AluI	AGCT	4 cut(s)	7, 174, 183, 277
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	250
BaeGI	GKGCMC	2 cut(s)	25, 332
BanII	GRGCYC	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	1 cut(s)	175
BglII	AGATCT	1 cut(s)	265
BmcAI	AGTACT	1 cut(s)	298
Bme18I	GGWCC	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	250
BmsI	GCATC	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	123
Bse1I	ACTGG	1 cut(s)	307
Bse3DI	GCAATG	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	133
BseMI	GCAATG	1 cut(s)	143
BseMII	CTCAG	1 cut(s)	98
BseNI	ACTGG	1 cut(s)	307
BseSI	GKGCMC	2 cut(s)	25, 332
BsiHKAI	GWGCWC	1 cut(s)	279
BsmAI	GTCTC	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	101
Bsp1286I	GDGCHC	3 cut(s)	25, 279, 332
Bsp143I	GATC	2 cut(s)	43, 265
BspCNI	CTCAG	1 cut(s)	99
BspPI	GGATC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	2 cut(s)	43, 265
BssT1I	CCWWGG	1 cut(s)	123
Bst6I	CTCTTC	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	2 cut(s)	46, 268
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	2 cut(s)	43, 265
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 180, 209
BstSFI	CTRYAG	1 cut(s)	175
BstSLI	GKGCMC	2 cut(s)	25, 332
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	2 cut(s)	43, 265
BstYI	RGATCY	2 cut(s)	43, 265
BtsCI	GGATG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	332
Cac8I	GCNNGC	1 cut(s)	205
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	297
CviJI	RGCY	4 cut(s)	7, 174, 183, 277
CviKI_1	RGCY	4 cut(s)	7, 174, 183, 277
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	2 cut(s)	45, 267
DpnII	GATC	2 cut(s)	43, 265
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	277
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	250
Eco53kI	GAGCTC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	123
FaiI	YATR	5 cut(s)	35, 37, 69, 93, 337
FauNDI	CATATG	1 cut(s)	35
FokI	GGATG	1 cut(s)	140
FriOI	GRGCYC	1 cut(s)	279
FspBI	CTAG	1 cut(s)	17
GlaI	GCGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	36
HhaI	GCGC	1 cut(s)	136
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	1 cut(s)	285
Hpy188III	TCNNGA	3 cut(s)	53, 239, 272
HpyAV	CCTTC	1 cut(s)	241
HpyCH4V	TGCA	2 cut(s)	59, 99
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 180, 209
HpyF3I	CTNAG	1 cut(s)	107
HspAI	GCGC	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	43, 265
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	5 cut(s)	60, 66, 252, 285, 288
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	17
MalI	GATC	2 cut(s)	45, 267
MboI	GATC	2 cut(s)	43, 265
MboII	GAAGA	5 cut(s)	109, 167, 227, 238, 260
MfeI	CAATTG	1 cut(s)	149
MflI	RGATCY	2 cut(s)	43, 265
MhlI	GDGCHC	3 cut(s)	25, 279, 332
MluCI	AATT	2 cut(s)	60, 149
MnlI	CCTC	1 cut(s)	202
MseI	TTAA	1 cut(s)	75
MunI	CAATTG	1 cut(s)	149
Mva1269I	GAATGC	1 cut(s)	101
MwoI	GCNNNNNNNGC	3 cut(s)	56, 180, 209
NdeI	CATATG	1 cut(s)	35
NdeII	GATC	2 cut(s)	43, 265
PctI	GAATGC	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	285
PpuMI	RGGWCCY	1 cut(s)	250
Psp124BI	GAGCTC	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	250
PspPPI	RGGWCCY	1 cut(s)	250
PsuI	RGATCY	2 cut(s)	43, 265
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
SacI	GAGCTC	1 cut(s)	279
SaqAI	TTAA	1 cut(s)	75
Sau3AI	GATC	2 cut(s)	43, 265
Sau96I	GGNCC	1 cut(s)	250
ScaI	AGTACT	1 cut(s)	298
SduI	GDGCHC	3 cut(s)	25, 279, 332
SetI	ASST	6 cut(s)	9, 162, 176, 185, 255, 279
SfaNI	GCATC	1 cut(s)	46
SfcI	CTRYAG	1 cut(s)	175
SinI	GGWCC	1 cut(s)	250
Sse9I	AATT	2 cut(s)	60, 149
SspMI	CTAG	1 cut(s)	17
SstI	GAGCTC	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	123
TasI	AATT	2 cut(s)	60, 149
TatI	WGTACW	1 cut(s)	296
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	332
TspDTI	ATGAA	3 cut(s)	17, 108, 324
TspRI	CASTG	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	250
XspI	CTAG	1 cut(s)	17
ZrmI	AGTACT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.