Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000595.1

Orthogroup ID

OG0008836

Physical Location & Seq

Genomic Coordinates Reverse (-)

85285 .. 85788

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000595.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgcattttttgggtctaaagtcagtgaagagcatttgtagtggtcctgccccacgcgtaatgtttcagagtcttaaaagtttgactatttaccgctgcgagttgctgcgaagtctgttcgcatgtgatgtagcccagtgtctctttcaattggaagaccttcttgtagagcggtgccctttgttggatacagtaagtgaagcagtgaacaatgagaagacggttctaccaaaattaaagaacttggctttgaggaaacttcctatgttgtatggtgcaagtggtactgttgatattgagtgtccttcattggaacacttgattgtggtggagtgcccccagttttcattttcaacttcttccgatctgttcgaattcttcaaaagcatgaaccatatttcattttcaacccctgcttccgactgctttggcagcacgaacccagtccaactcaatgattttcaaatgtaccaatttctacgtggcaggtatgtctctgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

167

Amino Acids

18.79

Weight (kDa)

6.28

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05590
malus_domestica	MD15G1398400.v1.1
rosa_chinensis	RchiOBHm_Chr5g0079581 RchiOBHm_Chr6g0274621 RchiOBHm_Chr7g0212741
rosa_multiflora	Rmu_sc0000595.1_g000005 Rmu_sc0000595.1_g000014 Rmu_sc0000631.1_g000034 Rmu_sc0001148.1_g000042 Rmu_sc0003131.1_g000018 Rmu_sc0003450.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110810 Rroxscaffold_3G00240350 Rroxscaffold_6G00412400 Rroxscaffold_7G00194710
rosa_rugosa	Rorug03G0098100
rosa_samantha	Rh7AG267900 Rh7CG286900 Rh7CG342200 Rh7DG321400
rosa_wichuraiana	Rw5G042570 Rw5G042580 Rw7G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	477
AccB1I	GGYRCC	1 cut(s)	174
AccBSI	CCGCTC	1 cut(s)	172
AccII	CGCG	1 cut(s)	57
AciI	CCGC	2 cut(s)	94, 172
AcsI	RAATTY	1 cut(s)	374
AfaI	GTAC	2 cut(s)	286, 470
AfiI	CCNNNNNNNGG	1 cut(s)	184
AflIII	ACRYGT	1 cut(s)	55
AgsI	TTSAA	5 cut(s)	149, 354, 382, 408, 464
Alw26I	GTCTC	2 cut(s)	146, 499
ApeKI	GCWGC	3 cut(s)	96, 106, 432
ApoI	RAATTY	1 cut(s)	374
Asp700I	GAANNNNTTC	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	44
AsuII	TTCGAA	1 cut(s)	372
AvaII	GGWCC	1 cut(s)	44
BaeGI	GKGCMC	2 cut(s)	179, 338
BanI	GGYRCC	1 cut(s)	174
BbsI	GAAGAC	2 cut(s)	162, 224
BbvI	GCAGC	3 cut(s)	83, 93, 444
BciVI	GTATCC	1 cut(s)	181
BcoDI	GTCTC	2 cut(s)	146, 499
BfuAI	ACCTGC	1 cut(s)	477
BfuI	GTATCC	1 cut(s)	181
BisI	GCNGC	3 cut(s)	97, 107, 433
BlsI	GCNGC	3 cut(s)	98, 108, 434
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	176
BmrI	ACTGGG	3 cut(s)	130, 334, 437
BmuI	ACTGGG	3 cut(s)	130, 334, 437
BpiI	GAAGAC	2 cut(s)	162, 224
Bpu14I	TTCGAA	1 cut(s)	372
BsaAI	YACGTR	1 cut(s)	482
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse1I	ACTGG	3 cut(s)	136, 340, 443
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseNI	ACTGG	3 cut(s)	136, 340, 443
BseSI	GKGCMC	2 cut(s)	179, 338
BseXI	GCAGC	3 cut(s)	83, 93, 444
Bsh1236I	CGCG	1 cut(s)	57
BshNI	GGYRCC	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	2 cut(s)	146, 499
Bsp119I	TTCGAA	1 cut(s)	372
Bsp1286I	GDGCHC	2 cut(s)	179, 338
Bsp143I	GATC	1 cut(s)	364
BspACI	CCGC	2 cut(s)	94, 172
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	176
BspMI	ACCTGC	1 cut(s)	477
BspQI	GCTCTTC	1 cut(s)	23
BspT104I	TTCGAA	1 cut(s)	372
BspT107I	GGYRCC	1 cut(s)	174
BsrBI	CCGCTC	1 cut(s)	172
BsrI	ACTGG	3 cut(s)	136, 340, 443
BssMI	GATC	1 cut(s)	364
Bst4CI	ACNGT	3 cut(s)	193, 223, 289
Bst6I	CTCTTC	1 cut(s)	23
BstBAI	YACGTR	1 cut(s)	482
BstBI	TTCGAA	1 cut(s)	372
BstFNI	CGCG	1 cut(s)	57
BstKTI	GATC	1 cut(s)	367
BstMAI	GTCTC	2 cut(s)	146, 499
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	1 cut(s)	432
BstNSI	RCATGY	1 cut(s)	126
BstSLI	GKGCMC	2 cut(s)	179, 338
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	3 cut(s)	83, 93, 444
BstV2I	GAAGAC	2 cut(s)	162, 224
BsuI	GTATCC	1 cut(s)	181
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	3 cut(s)	30, 143, 210
BveI	ACCTGC	1 cut(s)	477
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	2 cut(s)	285, 469
CviAII	CATG	2 cut(s)	123, 388
CviJI	RGCY	2 cut(s)	134, 248
CviKI_1	RGCY	2 cut(s)	134, 248
CviQI	GTAC	2 cut(s)	285, 469
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	374
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	126, 391
FaiI	YATR	6 cut(s)	124, 266, 273, 389, 396, 492
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FatI	CATG	2 cut(s)	122, 387
Fnu4HI	GCNGC	3 cut(s)	97, 107, 433
Fsp4HI	GCNGC	3 cut(s)	97, 107, 433
GluI	GCNGC	3 cut(s)	97, 107, 433
Hin1II	CATG	2 cut(s)	126, 391
HinfI	GANTC	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	3 cut(s)	69, 364, 421
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	2 cut(s)	170, 315
HpyCH4III	ACNGT	3 cut(s)	193, 223, 289
HpyCH4IV	ACGT	1 cut(s)	481
HpyCH4V	TGCA	2 cut(s)	4, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	432
HpySE526I	ACGT	1 cut(s)	481
Hsp92II	CATG	2 cut(s)	126, 391
Kzo9I	GATC	1 cut(s)	364
LguI	GCTCTTC	1 cut(s)	23
LpnPI	CCDG	6 cut(s)	60, 149, 353, 426, 456, 472
Lsp1109I	GCAGC	3 cut(s)	83, 93, 444
MaeII	ACGT	1 cut(s)	481
MalI	GATC	1 cut(s)	366
MbiI	CCGCTC	1 cut(s)	172
MboI	GATC	1 cut(s)	364
MboII	GAAGA	5 cut(s)	40, 167, 229, 351, 370
MfeI	CAATTG	1 cut(s)	149
MhlI	GDGCHC	2 cut(s)	179, 338
MluCI	AATT	4 cut(s)	149, 233, 374, 473
MluI	ACGCGT	1 cut(s)	55
MlyI	GAGTC	1 cut(s)	79
MmeI	TCCRAC	3 cut(s)	165, 444, 472
MnlI	CCTC	1 cut(s)	246
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	159
MseI	TTAA	2 cut(s)	75, 236
MspA1I	CMGCKG	1 cut(s)	96
MunI	CAATTG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	432
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	2 cut(s)	126, 391
NlaIV	GGNNCC	1 cut(s)	176
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	126
NspV	TTCGAA	1 cut(s)	372
PciSI	GCTCTTC	1 cut(s)	23
PdmI	GAANNNNTTC	1 cut(s)	159
PkrI	GCNGC	3 cut(s)	98, 108, 434
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
Ppu21I	YACGTR	1 cut(s)	482
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	44
RsaI	GTAC	2 cut(s)	286, 470
RsaNI	GTAC	2 cut(s)	285, 469
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	75, 236
SatI	GCNGC	3 cut(s)	97, 107, 433
Sau3AI	GATC	1 cut(s)	364
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	79
SduI	GDGCHC	2 cut(s)	179, 338
SetI	ASST	3 cut(s)	162, 484, 491
SfuI	TTCGAA	1 cut(s)	372
SinI	GGWCC	1 cut(s)	44
Sse9I	AATT	4 cut(s)	149, 233, 374, 473
SsiI	CCGC	2 cut(s)	94, 172
TaaI	ACNGT	3 cut(s)	193, 223, 289
TaiI	ACGT	1 cut(s)	484
TaqI	TCGA	1 cut(s)	372
TasI	AATT	4 cut(s)	149, 233, 374, 473
Tru1I	TTAA	2 cut(s)	75, 236
Tru9I	TTAA	2 cut(s)	75, 236
TscAI	CASTG	3 cut(s)	30, 143, 210
TseI	GCWGC	3 cut(s)	96, 106, 432
TspDTI	ATGAA	4 cut(s)	297, 336, 390, 404
TspRI	CASTG	3 cut(s)	30, 143, 210
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	1 cut(s)	374
XceI	RCATGY	1 cut(s)	126
XcmI	CCANNNNNNNNNTGG	1 cut(s)	479
XmnI	GAANNNNTTC	1 cut(s)	159
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.