Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008836

Physical Location & Seq

Genomic Coordinates Reverse (-)

38435885 .. 38437789

Gene Structure 1905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG342200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTTGTACAGTGGTAGTGCTGCTATTGATATGAAGTGTCCTTCATTGCAACACTTGTATGTGGAAGACTGCCCTCATGTTCCGGCCTCCGCTTATGACTTCGGGAGCAATAACCAAGTCATACTGAACGATCCACTGCATTACGCATCTCAGCAAGCCACAAAATTTGGCACACCCCTATTAGCATGGGATACTCTCAAGTCACGTCTCAAGGTCGGGGAAAAGATCTTAACATCGATGGAGCCTGAAATGATGCAGAGGGCGGTTGAATTCACGGGGAAGGTGTCTCAAATCATACAGACGAAGCCCGAATTTGCAAAGAAGTTTTTACCTAGTTTGTTAGCGAAGCCTGAATTATTAGAGATGATGCCTAGACTGATGGAGTTGCTTAATGGAATTTTGACAGAGAAGAATCCTGAATCGATGGAGAATCTTATAGCATTGGCGAATATCACTCCTGATCTGATGAATCATATACCTGCTGAGATTAGTGAGATGATGGATCTGATGACTAAATTGATGGAGGATACGAACTTTATCAAGTCCTTGCCTGGAATCGTGGAGAACATCCCTGGAATCATGAACTTGCCTCGAATCATAGAGGACTTTCCTCGATTGTTTGAGATTTTGCCAATGACTGGATCGGTGGAGAATATGCCTGGAATCATGGAGGGACTTTGCTCAATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

230

Amino Acids

25.74

Weight (kDa)

4.79

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05590
malus_domestica	MD15G1398400.v1.1
rosa_chinensis	RchiOBHm_Chr5g0079581 RchiOBHm_Chr6g0274621 RchiOBHm_Chr7g0212741
rosa_multiflora	Rmu_sc0000595.1_g000005 Rmu_sc0000595.1_g000014 Rmu_sc0000631.1_g000034 Rmu_sc0001148.1_g000042 Rmu_sc0003131.1_g000018 Rmu_sc0003450.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110810 Rroxscaffold_3G00240350 Rroxscaffold_6G00412400 Rroxscaffold_7G00194710
rosa_rugosa	Rorug03G0098100
rosa_samantha	Rh7AG267900 Rh7CG286900 Rh7CG342200 Rh7DG321400
rosa_wichuraiana	Rw5G042570 Rw5G042580 Rw7G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	487
AccB7I	CCANNNNNTGG	1 cut(s)	638
AciI	CCGC	2 cut(s)	90, 263
AclWI	GGATC	3 cut(s)	125, 510, 649
AcsI	RAATTY	4 cut(s)	164, 269, 311, 396
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	638
AgsI	TTSAA	1 cut(s)	269
AjiI	CACGTC	1 cut(s)	206
AjnI	CCWGG	3 cut(s)	550, 571, 658
Alw26I	GTCTC	2 cut(s)	212, 291
AlwI	GGATC	3 cut(s)	125, 510, 649
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	4 cut(s)	164, 269, 311, 396
BbsI	GAAGAC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	7
BccI	CCATC	5 cut(s)	232, 373, 418, 493, 514
BciT130I	CCWGG	3 cut(s)	552, 573, 660
BciVI	GTATCC	2 cut(s)	184, 520
BcoDI	GTCTC	2 cut(s)	212, 291
BfaI	CTAG	2 cut(s)	333, 372
BfuAI	ACCTGC	1 cut(s)	487
BfuI	GTATCC	2 cut(s)	184, 520
BglII	AGATCT	1 cut(s)	225
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	3 cut(s)	552, 573, 660
BmgBI	CACGTC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	3 cut(s)	552, 573, 660
BmsI	GCATC	3 cut(s)	155, 243, 357
BpiI	GAAGAC	1 cut(s)	72
BpuEI	CTTGAG	2 cut(s)	182, 194
Bsa29I	ATCGAT	2 cut(s)	236, 422
BsaJI	CCNNGG	1 cut(s)	571
Bsc4I	CCNNNNNNNGG	1 cut(s)	638
Bse1I	ACTGG	1 cut(s)	643
Bse3DI	GCAATG	1 cut(s)	44
BseBI	CCWGG	3 cut(s)	552, 573, 660
BseCI	ATCGAT	2 cut(s)	236, 422
BseDI	CCNNGG	1 cut(s)	571
BseGI	GGATG	1 cut(s)	567
BseLI	CCNNNNNNNGG	1 cut(s)	638
BseMI	GCAATG	1 cut(s)	44
BseMII	CTCAG	2 cut(s)	164, 474
BseNI	ACTGG	1 cut(s)	643
BseXI	GCAGC	1 cut(s)	7
BshFI	GGCC	1 cut(s)	86
BshVI	ATCGAT	2 cut(s)	236, 422
BsiSI	CCGG	1 cut(s)	83
BslFI	GGGAC	1 cut(s)	687
BslI	CCNNNNNNNGG	1 cut(s)	638
BsmAI	GTCTC	2 cut(s)	212, 291
BsmBI	CGTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	687
BsnI	GGCC	1 cut(s)	86
Bsp1407I	TGTACA	1 cut(s)	6
Bsp143I	GATC	5 cut(s)	130, 225, 460, 502, 641
BspACI	CCGC	2 cut(s)	90, 263
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	2 cut(s)	163, 475
BspDI	ATCGAT	2 cut(s)	236, 422
BspHI	TCATGA	1 cut(s)	579
BspLI	GGNNCC	1 cut(s)	243
BspMI	ACCTGC	1 cut(s)	487
BspPI	GGATC	3 cut(s)	125, 510, 649
BsrDI	GCAATG	1 cut(s)	44
BsrGI	TGTACA	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	643
BssECI	CCNNGG	1 cut(s)	571
BssMI	GATC	5 cut(s)	130, 225, 460, 502, 641
Bst2UI	CCWGG	3 cut(s)	552, 573, 660
Bst4CI	ACNGT	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	6
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	2 cut(s)	150, 483
BstF5I	GGATG	1 cut(s)	567
BstKTI	GATC	5 cut(s)	133, 228, 463, 505, 644
BstMAI	GTCTC	2 cut(s)	212, 291
BstMBI	GATC	5 cut(s)	130, 225, 460, 502, 641
BstNI	CCWGG	3 cut(s)	552, 573, 660
BstSCI	CCNGG	3 cut(s)	550, 571, 658
BstV1I	GCAGC	1 cut(s)	7
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	2 cut(s)	225, 502
BstYI	RGATCY	2 cut(s)	225, 502
Bsu15I	ATCGAT	2 cut(s)	236, 422
BsuI	GTATCC	2 cut(s)	184, 520
BsuRI	GGCC	1 cut(s)	86
BsuTUI	ATCGAT	2 cut(s)	236, 422
BtrI	CACGTC	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	567
BtsI	GCAGTG	1 cut(s)	134
BtsIMutI	CAGTG	2 cut(s)	16, 134
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	1 cut(s)	156
CciI	TCATGA	1 cut(s)	579
ClaI	ATCGAT	2 cut(s)	236, 422
Csp6I	GTAC	1 cut(s)	7
CspCI	CAANNNNNGTGG	2 cut(s)	148, 183
CviAII	CATG	4 cut(s)	77, 186, 580, 667
CviJI	RGCY	5 cut(s)	86, 158, 244, 307, 349
CviKI_1	RGCY	5 cut(s)	86, 158, 244, 307, 349
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	2 cut(s)	150, 483
DpnI	GATC	5 cut(s)	132, 227, 462, 504, 643
DpnII	GATC	5 cut(s)	130, 225, 460, 502, 641
EcoRI	GAATTC	1 cut(s)	269
EcoRII	CCWGG	3 cut(s)	550, 571, 658
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	4 cut(s)	80, 189, 583, 670
FaqI	GGGAC	1 cut(s)	687
FatI	CATG	4 cut(s)	76, 185, 579, 666
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	1 cut(s)	554
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	2 cut(s)	333, 372
GluI	GCNGC	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	1 cut(s)	83
Hin1II	CATG	4 cut(s)	80, 189, 583, 670
HinfI	GANTC	8 cut(s)	412, 419, 430, 469, 555, 576, 594, 663
HpaII	CCGG	1 cut(s)	83
Hpy188I	TCNGA	2 cut(s)	465, 507
Hpy188III	TCNNGA	4 cut(s)	103, 416, 458, 580
HpyAV	CCTTC	2 cut(s)	51, 274
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	4 cut(s)	49, 139, 256, 317
HpyF3I	CTNAG	2 cut(s)	150, 483
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	4 cut(s)	80, 189, 583, 670
Kzo9I	GATC	5 cut(s)	130, 225, 460, 502, 641
LmnI	GCTCC	2 cut(s)	105, 241
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	3 cut(s)	155, 243, 357
MaeI	CTAG	2 cut(s)	333, 372
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	201
MalI	GATC	5 cut(s)	132, 227, 462, 504, 643
MboI	GATC	5 cut(s)	130, 225, 460, 502, 641
MboII	GAAGA	2 cut(s)	77, 421
MfeI	CAATTG	1 cut(s)	684
MflI	RGATCY	2 cut(s)	225, 502
MluCI	AATT	7 cut(s)	164, 269, 311, 353, 396, 515, 684
MnlI	CCTC	8 cut(s)	84, 97, 252, 517, 595, 600, 621, 664
MseI	TTAA	2 cut(s)	230, 390
MslI	CAYNNNNRTG	1 cut(s)	57
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	3 cut(s)	552, 573, 660
MunI	CAATTG	1 cut(s)	684
MvaI	CCWGG	3 cut(s)	552, 573, 660
NdeII	GATC	5 cut(s)	130, 225, 460, 502, 641
NlaIII	CATG	4 cut(s)	80, 189, 583, 670
NlaIV	GGNNCC	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	201
PagI	TCATGA	1 cut(s)	579
PfeI	GAWTC	8 cut(s)	412, 419, 430, 469, 555, 576, 594, 663
PflMI	CCANNNNNTGG	1 cut(s)	638
PkrI	GCNGC	1 cut(s)	22
Psp6I	CCWGG	3 cut(s)	550, 571, 658
PspGI	CCWGG	3 cut(s)	550, 571, 658
PspN4I	GGNNCC	1 cut(s)	243
PsuI	RGATCY	2 cut(s)	225, 502
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
RseI	CAYNNNNRTG	1 cut(s)	57
SaqAI	TTAA	2 cut(s)	230, 390
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	5 cut(s)	130, 225, 460, 502, 641
ScrFI	CCNGG	3 cut(s)	552, 573, 660
SetI	ASST	5 cut(s)	208, 216, 285, 334, 481
SfaNI	GCATC	3 cut(s)	155, 243, 357
SmiMI	CAYNNNNRTG	1 cut(s)	57
SmlI	CTYRAG	2 cut(s)	197, 209
SmoI	CTYRAG	2 cut(s)	197, 209
Sse9I	AATT	7 cut(s)	164, 269, 311, 353, 396, 515, 684
SsiI	CCGC	2 cut(s)	90, 263
SspMI	CTAG	2 cut(s)	333, 372
StyD4I	CCNGG	3 cut(s)	550, 571, 658
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	4 cut(s)	236, 422, 592, 613
TasI	AATT	7 cut(s)	164, 269, 311, 353, 396, 515, 684
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	8 cut(s)	412, 419, 430, 469, 555, 576, 594, 663
Tru1I	TTAA	2 cut(s)	230, 390
Tru9I	TTAA	2 cut(s)	230, 390
TscAI	CASTG	2 cut(s)	16, 141
TseFI	GTSAC	1 cut(s)	201
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	201
TspDTI	ATGAA	4 cut(s)	33, 47, 482, 596
TspRI	CASTG	2 cut(s)	16, 141
Van91I	CCANNNNNTGG	1 cut(s)	638
XapI	RAATTY	4 cut(s)	164, 269, 311, 396
XspI	CTAG	2 cut(s)	333, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.