Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000595.1

Orthogroup ID

OG0008836

Physical Location & Seq

Genomic Coordinates Reverse (-)

31769 .. 32272

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000595.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgcatttgttgggtctaaattcagtgaagagcatttgtagtggtcttgccccacgagtaatgtttcagagtcttaaaagtttgaccatttacagttgcgagttgctgcgaagtctgttcgcatgtgatgtagccaagtgtctctctcaattggaagacctttttgttgagcggtgccgtttgttggaaagagtaattgaagcagtgaacaacgagaagacggttctaccaaaattgaagaacttggttttgaagaatcttcctatgttgtatggtgcaagtggtactgttgatattgactgtccttcattggaacacttgattgtggagaattgcccccggttttcattttcagatacttccgattactttgattccatcaaaagcatgacccatatatcattttcaacctctggttctgactactttggcagcacgaacccagtccaactcaatgattttcaaatgtaccaatttctacgtgacaggtatgtctctgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

167

Amino Acids

18.88

Weight (kDa)

5.89

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05590
malus_domestica	MD15G1398400.v1.1
rosa_chinensis	RchiOBHm_Chr5g0079581 RchiOBHm_Chr6g0274621 RchiOBHm_Chr7g0212741
rosa_multiflora	Rmu_sc0000595.1_g000005 Rmu_sc0000595.1_g000014 Rmu_sc0000631.1_g000034 Rmu_sc0001148.1_g000042 Rmu_sc0003131.1_g000018 Rmu_sc0003450.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110810 Rroxscaffold_3G00240350 Rroxscaffold_6G00412400 Rroxscaffold_7G00194710
rosa_rugosa	Rorug03G0098100
rosa_samantha	Rh7AG267900 Rh7CG286900 Rh7CG342200 Rh7DG321400
rosa_wichuraiana	Rw5G042570 Rw5G042580 Rw7G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	491
AccB1I	GGYRCC	1 cut(s)	174
AccBSI	CCGCTC	1 cut(s)	172
AciI	CCGC	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	19
AfaI	GTAC	2 cut(s)	286, 470
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	5 cut(s)	200, 238, 253, 408, 464
Alw26I	GTCTC	2 cut(s)	146, 499
ApeKI	GCWGC	2 cut(s)	106, 432
ApoI	RAATTY	1 cut(s)	19
AsuC2I	CCSGG	1 cut(s)	340
BanI	GGYRCC	1 cut(s)	174
BauI	CACGAG	1 cut(s)	54
BbsI	GAAGAC	2 cut(s)	162, 224
BbvI	GCAGC	2 cut(s)	93, 444
BccI	CCATC	1 cut(s)	386
BceAI	ACGGC	1 cut(s)	162
BcnI	CCSGG	1 cut(s)	340
BcoDI	GTCTC	2 cut(s)	146, 499
BisI	GCNGC	2 cut(s)	107, 433
BlsI	GCNGC	2 cut(s)	108, 434
Bme1390I	CCNGG	1 cut(s)	340
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	340
BmrI	ACTGGG	1 cut(s)	437
BmuI	ACTGGG	1 cut(s)	437
BpiI	GAAGAC	2 cut(s)	162, 224
BpuMI	CCSGG	1 cut(s)	340
BsaAI	YACGTR	1 cut(s)	482
BsaJI	CCNNGG	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	443
BseDI	CCNNGG	1 cut(s)	338
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseNI	ACTGG	1 cut(s)	443
BseXI	GCAGC	2 cut(s)	93, 444
BshNI	GGYRCC	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	340
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	2 cut(s)	146, 499
BspACI	CCGC	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	176
BspQI	GCTCTTC	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	174
BsrBI	CCGCTC	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	443
BssECI	CCNNGG	1 cut(s)	338
BssSI	CACGAG	1 cut(s)	54
Bst2BI	CACGAG	1 cut(s)	54
Bst4CI	ACNGT	4 cut(s)	95, 223, 289, 302
Bst6I	CTCTTC	1 cut(s)	23
BstBAI	YACGTR	1 cut(s)	482
BstMAI	GTCTC	2 cut(s)	146, 499
BstNSI	RCATGY	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	338
BstV1I	GCAGC	2 cut(s)	93, 444
BstV2I	GAAGAC	2 cut(s)	162, 224
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	2 cut(s)	30, 210
Csp6I	GTAC	2 cut(s)	285, 469
CviAII	CATG	2 cut(s)	123, 388
CviJI	RGCY	1 cut(s)	134
CviKI_1	RGCY	1 cut(s)	134
CviQI	GTAC	2 cut(s)	285, 469
DrdI	GACNNNNNNGTC	1 cut(s)	491
DseDI	GACNNNNNNGTC	1 cut(s)	491
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	126, 391
FaiI	YATR	7 cut(s)	124, 266, 273, 389, 396, 398, 492
FatI	CATG	2 cut(s)	122, 387
Fnu4HI	GCNGC	2 cut(s)	107, 433
Fsp4HI	GCNGC	2 cut(s)	107, 433
GluI	GCNGC	2 cut(s)	107, 433
HapII	CCGG	1 cut(s)	340
Hin1II	CATG	2 cut(s)	126, 391
HinfI	GANTC	3 cut(s)	70, 256, 374
HpaII	CCGG	1 cut(s)	340
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	4 cut(s)	69, 355, 364, 421
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	1 cut(s)	315
HpyCH4III	ACNGT	4 cut(s)	95, 223, 289, 302
HpyCH4IV	ACGT	1 cut(s)	481
HpyCH4V	TGCA	2 cut(s)	4, 278
HpySE526I	ACGT	1 cut(s)	481
Hsp92II	CATG	2 cut(s)	126, 391
LguI	GCTCTTC	1 cut(s)	23
LpnPI	CCDG	4 cut(s)	353, 399, 456, 472
Lsp1109I	GCAGC	2 cut(s)	93, 444
MaeII	ACGT	1 cut(s)	481
MaeIII	GTNAC	1 cut(s)	482
MbiI	CCGCTC	1 cut(s)	172
MboII	GAAGA	6 cut(s)	40, 167, 229, 250, 251, 265
MfeI	CAATTG	1 cut(s)	149
MluCI	AATT	6 cut(s)	19, 149, 195, 233, 331, 473
MlyI	GAGTC	1 cut(s)	79
MmeI	TCCRAC	2 cut(s)	165, 472
MnlI	CCTC	1 cut(s)	421
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	75
MspI	CCGG	1 cut(s)	340
MspR9I	CCNGG	1 cut(s)	340
MunI	CAATTG	1 cut(s)	149
NciI	CCSGG	1 cut(s)	340
NlaIII	CATG	2 cut(s)	126, 391
NlaIV	GGNNCC	1 cut(s)	176
NmuCI	GTSAC	1 cut(s)	482
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	126
PciSI	GCTCTTC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	256, 374
PkrI	GCNGC	2 cut(s)	108, 434
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
Ppu21I	YACGTR	1 cut(s)	482
PspN4I	GGNNCC	1 cut(s)	176
RsaI	GTAC	2 cut(s)	286, 470
RsaNI	GTAC	2 cut(s)	285, 469
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	2 cut(s)	107, 433
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	1 cut(s)	340
SetI	ASST	4 cut(s)	162, 413, 484, 491
Sse9I	AATT	6 cut(s)	19, 149, 195, 233, 331, 473
SsiI	CCGC	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	338
TaaI	ACNGT	4 cut(s)	95, 223, 289, 302
TaiI	ACGT	1 cut(s)	484
TasI	AATT	6 cut(s)	19, 149, 195, 233, 331, 473
TfiI	GAWTC	2 cut(s)	256, 374
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	2 cut(s)	30, 210
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	2 cut(s)	106, 432
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	2 cut(s)	297, 336
TspRI	CASTG	2 cut(s)	30, 210
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	126
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.