RchiOBHm_Chr7g0212741

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0008836
Physical Location & Seq
Forward (+)
29944309 .. 29945914
1606 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19038

Sequence Viewer

Length: 1152 bp
ATGGAATATGTGTTTGGATGTGAAGGATTTGAGCTAGAACAATCAAAACTGAGAAAGATGAACTTGTTTGAGCTAGAAGCAGTAAAAAGCATATGTAATGGTCCTGCTCCACCTGCAATGTTCCAAGCGCTTCACAGTTTGTCAATTTACCGTTGCAAATTTCACGGATGTCTCTTCACATTTAATGTAGCTCAATGTCTTTTTCAAGTGGAAATCATTTCAGTACAGAGTTGCCCTATCTTGGAAAGAGTAATCGAAGCAAGCAAGGAATCAGAGCTCAGTAAGAAGACCGTTCTTCCAAAATTGAAGTACCTAGGCTTGGTGGATCTTCCTATGTTGTACAGTGGTAGTGCTGCTATTGATATGGAGTGTCCTTCATTGGAACACTTGTATGTGGAAGACTGCCCTCATGTTCCGGCCTCTGCTTATGACTTCGGGAGCAATAACCAGGTCATACTCAACGATCCACGGCATTACGCATCTCAGCAAGCAACAAAATTTGGCACACCCCTATCAGCATGGGATACTCTCATCAAGTCACGTCTCAAGGTCGGGGAAAAGATCTTAACATCGATGGAGCCTGAAATGATGCAGAGGGCGGTTGAATTCACGGGGAAGATGTCTCAAATCATACAGACGAAGCCCGAATTTGCAAAGAAGTTTTTACCTAGTTCGTTAGCGAAGCCTGAATTGTTGGAGATGATGCCTAGACTGATGGAGTTGCTGAATGGAAGTTTGACAGAGAAGAATCCTGAATCGATGGAGAATCTTATAGCGTTGGCGAATATCACTCCTGATCTGATGAATCATATACCTGCTGAGATTAGTAAGATGATGGATCTGATGACTAAATTGATGGAGGATACGAACTTTATCAAGTCCTTGACTGGAATCGTGGAGAACATCCCTGGAATCATGAACTTGCCTCGAATCATAGAGGACTTTCCTCGATTGTTTGAGATTTTGCCAATGACTGGATCGGTGGAGAATATGCCTGGAATCATGGAGGACTTTGCTCAATTGATTGAGAATTCGCCTCAGATGGCTGAATCGTTGAAGGACTTTGCTCAATCGGTTGAGAATTTTCTGAATTTGCCTCAAATGACTGAATGGATGGGAATCATGGAGAACTTATCTCAGATGACTGAATAG

Protein Analysis

383

Amino Acids

43.23

Weight (kDa)

4.87

Isoelectric Point (pI)

46.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 20 - 136 1.4e-11 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 121
Acc36I ACCTGC 2 cut(s) 121, 823
AccB7I CCANNNNNTGG 1 cut(s) 974
AciI CCGC 1 cut(s) 599
AclWI GGATC 4 cut(s) 333, 458, 846, 985
AcsI RAATTY 7 cut(s) 158, 497, 605, 647, 1030, 1081, 1090
AfaI GTAC 3 cut(s) 225, 311, 341
AfeI AGCGCT 1 cut(s) 129
AfiI CCNNNNNNNGG 3 cut(s) 241, 319, 974
AgsI TTSAA 4 cut(s) 206, 307, 605, 1057
AjiI CACGTC 1 cut(s) 542
AjnI CCWGG 3 cut(s) 447, 907, 994
AjuI GAANNNNNNNTTGG 1 cut(s) 29
AluBI AGCT 4 cut(s) 34, 73, 191, 277
AluI AGCT 4 cut(s) 34, 73, 191, 277
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 3 cut(s) 176, 548, 627
AlwI GGATC 4 cut(s) 333, 458, 846, 985
Aor51HI AGCGCT 1 cut(s) 129
AoxI GGCC 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 353
ApoI RAATTY 7 cut(s) 158, 497, 605, 647, 1030, 1081, 1090
AspA2I CCTAGG 1 cut(s) 313
AspLEI GCGC 1 cut(s) 130
AspS9I GGNCC 1 cut(s) 101
AvaII GGWCC 1 cut(s) 101
AvrII CCTAGG 1 cut(s) 313
BanII GRGCYC 1 cut(s) 279
BbsI GAAGAC 2 cut(s) 293, 405
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 340
BccI CCATC 7 cut(s) 568, 709, 754, 829, 850, 1036, 1108
BceAI ACGGC 1 cut(s) 485
BciT130I CCWGG 3 cut(s) 449, 909, 996
BciVI GTATCC 2 cut(s) 517, 856
BcoDI GTCTC 3 cut(s) 176, 548, 627
BfaI CTAG 5 cut(s) 35, 74, 314, 669, 708
BfoI RGCGCY 1 cut(s) 131
BfuAI ACCTGC 2 cut(s) 121, 823
BfuI GTATCC 2 cut(s) 517, 856
BglII AGATCT 1 cut(s) 561
BisI GCNGC 1 cut(s) 354
BlnI CCTAGG 1 cut(s) 313
BlsI GCNGC 1 cut(s) 355
Bme1390I CCNGG 3 cut(s) 449, 909, 996
Bme18I GGWCC 1 cut(s) 101
BmgBI CACGTC 1 cut(s) 542
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 579
BmrFI CCNGG 3 cut(s) 449, 909, 996
BmsI GCATC 3 cut(s) 488, 579, 693
BpiI GAAGAC 2 cut(s) 293, 405
BpuEI CTTGAG 1 cut(s) 530
Bsa29I ATCGAT 2 cut(s) 572, 758
BsaBI GATNNNNATC 1 cut(s) 1118
BsaJI CCNNGG 3 cut(s) 313, 467, 907
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 319, 974
Bse1I ACTGG 2 cut(s) 892, 979
Bse3DI GCAATG 1 cut(s) 123
Bse8I GATNNNNATC 1 cut(s) 1118
BseBI CCWGG 3 cut(s) 449, 909, 996
BseCI ATCGAT 2 cut(s) 572, 758
BseDI CCNNGG 3 cut(s) 313, 467, 907
BseGI GGATG 4 cut(s) 23, 173, 903, 1119
BseJI GATNNNNATC 1 cut(s) 1118
BseLI CCNNNNNNNGG 3 cut(s) 241, 319, 974
BseMI GCAATG 1 cut(s) 123
BseMII CTCAG 6 cut(s) 41, 292, 497, 810, 1052, 1151
BseNI ACTGG 2 cut(s) 892, 979
BseXI GCAGC 1 cut(s) 340
BshFI GGCC 1 cut(s) 419
BshVI ATCGAT 2 cut(s) 572, 758
BsiHKAI GWGCWC 1 cut(s) 279
BsiSI CCGG 1 cut(s) 416
BslI CCNNNNNNNGG 3 cut(s) 241, 319, 974
BsmAI GTCTC 3 cut(s) 176, 548, 627
BsmBI CGTCTC 1 cut(s) 548
BsnI GGCC 1 cut(s) 419
Bsp1286I GDGCHC 1 cut(s) 279
Bsp1407I TGTACA 1 cut(s) 339
Bsp143I GATC 6 cut(s) 325, 463, 561, 796, 838, 977
BspACI CCGC 1 cut(s) 599
BspANI GGCC 1 cut(s) 419
BspCNI CTCAG 6 cut(s) 42, 291, 496, 811, 1051, 1150
BspDI ATCGAT 2 cut(s) 572, 758
BspHI TCATGA 1 cut(s) 915
BspLI GGNNCC 1 cut(s) 579
BspMI ACCTGC 2 cut(s) 121, 823
BspPI GGATC 4 cut(s) 333, 458, 846, 985
BsrDI GCAATG 1 cut(s) 123
BsrGI TGTACA 1 cut(s) 339
BsrI ACTGG 2 cut(s) 892, 979
BssECI CCNNGG 3 cut(s) 313, 467, 907
BssMI GATC 6 cut(s) 325, 463, 561, 796, 838, 977
BssT1I CCWWGG 1 cut(s) 313
Bst2UI CCWGG 3 cut(s) 449, 909, 996
Bst4CI ACNGT 4 cut(s) 137, 152, 292, 344
Bst6I CTCTTC 1 cut(s) 179
BstAUI TGTACA 1 cut(s) 339
BstC8I GCNNGC 2 cut(s) 262, 489
BstDEI CTNAG 6 cut(s) 50, 278, 483, 819, 1038, 1137
BstDSI CCRYGG 1 cut(s) 467
BstF5I GGATG 4 cut(s) 23, 173, 903, 1119
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 6 cut(s) 328, 466, 564, 799, 841, 980
BstMAI GTCTC 3 cut(s) 176, 548, 627
BstMBI GATC 6 cut(s) 325, 463, 561, 796, 838, 977
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 3 cut(s) 449, 909, 996
BstSCI CCNGG 3 cut(s) 447, 907, 994
BstV1I GCAGC 1 cut(s) 340
BstV2I GAAGAC 2 cut(s) 293, 405
BstX2I RGATCY 3 cut(s) 325, 561, 838
BstYI RGATCY 3 cut(s) 325, 561, 838
Bsu15I ATCGAT 2 cut(s) 572, 758
BsuI GTATCC 2 cut(s) 517, 856
BsuRI GGCC 1 cut(s) 419
BsuTUI ATCGAT 2 cut(s) 572, 758
BtgI CCRYGG 1 cut(s) 467
BtrI CACGTC 1 cut(s) 542
BtsCI GGATG 4 cut(s) 23, 173, 903, 1119
BtsIMutI CAGTG 1 cut(s) 349
BveI ACCTGC 2 cut(s) 121, 823
Cac8I GCNNGC 2 cut(s) 262, 489
CciI TCATGA 1 cut(s) 915
CfoI GCGC 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 101
ClaI ATCGAT 2 cut(s) 572, 758
CsiI ACCWGGT 1 cut(s) 447
Csp6I GTAC 3 cut(s) 224, 310, 340
CviAII CATG 5 cut(s) 410, 519, 916, 1003, 1123
CviQI GTAC 3 cut(s) 224, 310, 340
DdeI CTNAG 6 cut(s) 50, 278, 483, 819, 1038, 1137
DpnI GATC 6 cut(s) 327, 465, 563, 798, 840, 979
DpnII GATC 6 cut(s) 325, 463, 561, 796, 838, 977
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Ecl136II GAGCTC 1 cut(s) 277
Eco130I CCWWGG 1 cut(s) 313
Eco24I GRGCYC 1 cut(s) 279
Eco47I GGWCC 1 cut(s) 101
Eco47III AGCGCT 1 cut(s) 129
Eco53kI GAGCTC 1 cut(s) 277
EcoICRI GAGCTC 1 cut(s) 277
EcoRI GAATTC 2 cut(s) 605, 1030
EcoRII CCWGG 3 cut(s) 447, 907, 994
EcoT14I CCWWGG 1 cut(s) 313
EcoT38I GRGCYC 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 313
Esp3I CGTCTC 1 cut(s) 548
FaeI CATG 5 cut(s) 413, 522, 919, 1006, 1126
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FatI CATG 5 cut(s) 409, 518, 915, 1002, 1122
FauNDI CATATG 1 cut(s) 92
Fnu4HI GCNGC 1 cut(s) 354
FokI GGATG 4 cut(s) 30, 180, 890, 1126
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 1 cut(s) 354
FspBI CTAG 5 cut(s) 35, 74, 314, 669, 708
GlaI GCGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 354
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 1 cut(s) 419
HapII CCGG 1 cut(s) 416
HhaI GCGC 1 cut(s) 130
Hin1II CATG 5 cut(s) 413, 522, 919, 1006, 1126
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HpaII CCGG 1 cut(s) 416
Hpy188I TCNGA 6 cut(s) 274, 801, 843, 1041, 1089, 1140
Hpy188III TCNNGA 4 cut(s) 436, 752, 794, 916
HpyAV CCTTC 3 cut(s) 17, 384, 1051
HpyCH4III ACNGT 4 cut(s) 137, 152, 292, 344
HpyCH4IV ACGT 1 cut(s) 541
HpyCH4V TGCA 4 cut(s) 116, 156, 592, 653
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 6 cut(s) 50, 278, 483, 819, 1038, 1137
HpySE526I ACGT 1 cut(s) 541
Hsp92II CATG 5 cut(s) 413, 522, 919, 1006, 1126
HspAI GCGC 1 cut(s) 128
Kzo9I GATC 6 cut(s) 325, 463, 561, 796, 838, 977
LmnI GCTCC 3 cut(s) 112, 438, 577
Lsp1109I GCAGC 1 cut(s) 340
LweI GCATC 3 cut(s) 488, 579, 693
MabI ACCWGGT 1 cut(s) 447
MaeI CTAG 5 cut(s) 35, 74, 314, 669, 708
MaeII ACGT 1 cut(s) 541
MaeIII GTNAC 1 cut(s) 537
MalI GATC 6 cut(s) 327, 465, 563, 798, 840, 979
MboI GATC 6 cut(s) 325, 463, 561, 796, 838, 977
MboII GAAGA 7 cut(s) 166, 287, 298, 320, 410, 628, 757
MfeI CAATTG 1 cut(s) 1019
MflI RGATCY 3 cut(s) 325, 561, 838
MhlI GDGCHC 1 cut(s) 279
MmeI TCCRAC 1 cut(s) 675
MseI TTAA 2 cut(s) 183, 566
MslI CAYNNNNRTG 1 cut(s) 390
MspI CCGG 1 cut(s) 416
MspR9I CCNGG 3 cut(s) 449, 909, 996
MunI CAATTG 1 cut(s) 1019
MvaI CCWGG 3 cut(s) 449, 909, 996
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeI CATATG 1 cut(s) 92
NdeII GATC 6 cut(s) 325, 463, 561, 796, 838, 977
NlaIII CATG 5 cut(s) 413, 522, 919, 1006, 1126
NlaIV GGNNCC 1 cut(s) 579
NmuCI GTSAC 1 cut(s) 537
PagI TCATGA 1 cut(s) 915
PaqCI CACCTGC 1 cut(s) 121
PflMI CCANNNNNTGG 1 cut(s) 974
PkrI GCNGC 1 cut(s) 355
Psp124BI GAGCTC 1 cut(s) 279
Psp6I CCWGG 3 cut(s) 447, 907, 994
PspGI CCWGG 3 cut(s) 447, 907, 994
PspN4I GGNNCC 1 cut(s) 579
PspPI GGNCC 1 cut(s) 101
PsuI RGATCY 3 cut(s) 325, 561, 838
RsaI GTAC 3 cut(s) 225, 311, 341
RsaNI GTAC 3 cut(s) 224, 310, 340
RseI CAYNNNNRTG 1 cut(s) 390
SacI GAGCTC 1 cut(s) 279
SaqAI TTAA 2 cut(s) 183, 566
SatI GCNGC 1 cut(s) 354
Sau3AI GATC 6 cut(s) 325, 463, 561, 796, 838, 977
Sau96I GGNCC 1 cut(s) 101
ScrFI CCNGG 3 cut(s) 449, 909, 996
SduI GDGCHC 1 cut(s) 279
SexAI ACCWGGT 1 cut(s) 447
SfaNI GCATC 3 cut(s) 488, 579, 693
SinI GGWCC 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 390
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
SsiI CCGC 1 cut(s) 599
SspMI CTAG 5 cut(s) 35, 74, 314, 669, 708
SstI GAGCTC 1 cut(s) 279
StyD4I CCNGG 3 cut(s) 447, 907, 994
StyI CCWWGG 1 cut(s) 313
TaaI ACNGT 4 cut(s) 137, 152, 292, 344
TaiI ACGT 1 cut(s) 544
TaqI TCGA 5 cut(s) 255, 572, 758, 928, 949
TatI WGTACW 2 cut(s) 223, 339
Tru1I TTAA 2 cut(s) 183, 566
Tru9I TTAA 2 cut(s) 183, 566
TscAI CASTG 1 cut(s) 349
TseFI GTSAC 1 cut(s) 537
TseI GCWGC 1 cut(s) 353
Tsp45I GTSAC 1 cut(s) 537
TspDTI ATGAA 4 cut(s) 74, 366, 818, 932
TspGWI ACGGA 1 cut(s) 180
TspRI CASTG 1 cut(s) 349
Van91I CCANNNNNTGG 1 cut(s) 974
VpaK11BI GGWCC 1 cut(s) 101
XapI RAATTY 7 cut(s) 158, 497, 605, 647, 1030, 1081, 1090
XmaJI CCTAGG 1 cut(s) 313
XspI CTAG 5 cut(s) 35, 74, 314, 669, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.