Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000631.1

Orthogroup ID

OG0008836

Physical Location & Seq

Genomic Coordinates Forward (+)

190678 .. 191220

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000631.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgaagattgaatatgtgcttaggtatgaagcgttacttgagccagaacaatcaaaattgaggaagatagagttgtggggtgacggcagtctacgtacagtgagaagcatatgtcatggacctgctccagctgcaatgttccaaactcttcaaagtttgaccattaagatgtgcggtttgctgggaagtctcttcacctctgatgttgctcaatgtcttttacaattgaaatacgttgatttagactgttgcttctttttgtcaagaatagttgaagcaagcaacaagaagatcattcttccaaaattgaaggaattaattttgacaggactaccaatattatactatgaaagtgcttcttttgatattgagtgtccttcactggaaaacctatatgtgacgcactgccccatgtttttagtctcttctcttgacttccacagcaggaaacaagtccaactcaagaggtatgttgctgtatcaaaaacttacttgatttgtcatattgatttggtagtccaattgctcacgaataatcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

180

Amino Acids

20.54

Weight (kDa)

8.09

Isoelectric Point (pI)

56.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05590
malus_domestica	MD15G1398400.v1.1
rosa_chinensis	RchiOBHm_Chr5g0079581 RchiOBHm_Chr6g0274621 RchiOBHm_Chr7g0212741
rosa_multiflora	Rmu_sc0000595.1_g000005 Rmu_sc0000595.1_g000014 Rmu_sc0000631.1_g000034 Rmu_sc0001148.1_g000042 Rmu_sc0003131.1_g000018 Rmu_sc0003450.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110810 Rroxscaffold_3G00240350 Rroxscaffold_6G00412400 Rroxscaffold_7G00194710
rosa_rugosa	Rorug03G0098100
rosa_samantha	Rh7AG267900 Rh7CG286900 Rh7CG342200 Rh7DG321400
rosa_wichuraiana	Rw5G042570 Rw5G042580 Rw7G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	130
AccI	GTMKAC	1 cut(s)	91
AciI	CCGC	1 cut(s)	174
AfaI	GTAC	1 cut(s)	97
AgsI	TTSAA	5 cut(s)	11, 152, 229, 275, 310
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
Alw26I	GTCTC	2 cut(s)	194, 427
ApeKI	GCWGC	1 cut(s)	131
AseI	ATTAAT	1 cut(s)	317
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	2 cut(s)	92, 187
AvaII	GGWCC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	118
BceAI	ACGGC	1 cut(s)	100
BcoDI	GTCTC	2 cut(s)	194, 427
BfuAI	ACCTGC	1 cut(s)	130
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BoxI	GACNNNNGTC	1 cut(s)	87
BpmI	CTGGAG	1 cut(s)	111
Bpu10I	CCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	2 cut(s)	59, 446
BsaAI	YACGTR	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	387
Bse3DI	GCAATG	1 cut(s)	141
BseMI	GCAATG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	387
BseXI	GCAGC	1 cut(s)	118
BseYI	CCCAGC	1 cut(s)	181
BsmAI	GTCTC	2 cut(s)	194, 427
Bsp143I	GATC	1 cut(s)	291
BspACI	CCGC	1 cut(s)	174
BspMI	ACCTGC	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	387
BssMI	GATC	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	100, 248
Bst6I	CTCTTC	3 cut(s)	153, 197, 430
BstBAI	YACGTR	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	1 cut(s)	20
BstKTI	GATC	1 cut(s)	294
BstMAI	GTCTC	2 cut(s)	194, 427
BstMBI	GATC	1 cut(s)	291
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstPAI	GACNNNNGTC	1 cut(s)	87
BstSNI	TACGTA	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	403
BtsIMutI	CAGTG	3 cut(s)	105, 380, 403
BveI	ACCTGC	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	119
CseI	GACGC	1 cut(s)	409
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	2 cut(s)	116, 412
CviJI	RGCY	2 cut(s)	43, 131
CviKI_1	RGCY	2 cut(s)	43, 131
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
Eam1104I	CTCTTC	3 cut(s)	153, 197, 430
EarI	CTCTTC	3 cut(s)	153, 197, 430
Eco105I	TACGTA	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	119
FaeI	CATG	2 cut(s)	119, 415
FalI	AAGNNNNNCTT	4 cut(s)	21, 53, 343, 375
FatI	CATG	2 cut(s)	115, 411
FauNDI	CATATG	1 cut(s)	110
FblI	GTMKAC	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	132
GluI	GCNGC	1 cut(s)	132
GsaI	CCCAGC	1 cut(s)	185
GsuI	CTGGAG	1 cut(s)	111
HgaI	GACGC	1 cut(s)	409
Hin1II	CATG	2 cut(s)	119, 415
HphI	GGTGA	2 cut(s)	92, 187
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	4 cut(s)	264, 431, 463, 529
Hpy8I	GTNNAC	1 cut(s)	92
HpyAV	CCTTC	2 cut(s)	304, 387
HpyCH4III	ACNGT	2 cut(s)	100, 248
HpyCH4IV	ACGT	2 cut(s)	94, 234
HpyCH4V	TGCA	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	20
HpySE526I	ACGT	2 cut(s)	94, 234
Hsp92II	CATG	2 cut(s)	119, 415
Kzo9I	GATC	1 cut(s)	291
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	7 cut(s)	57, 135, 141, 167, 312, 368, 430
Lsp1109I	GCAGC	1 cut(s)	118
MaeII	ACGT	2 cut(s)	94, 234
MaeIII	GTNAC	3 cut(s)	33, 80, 397
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	7 cut(s)	16, 76, 140, 184, 290, 301, 417
MfeI	CAATTG	2 cut(s)	224, 521
MluCI	AATT	6 cut(s)	56, 224, 305, 314, 318, 521
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	3 cut(s)	54, 208, 459
MseI	TTAA	2 cut(s)	165, 317
MslI	CAYNNNNRTG	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	131
MunI	CAATTG	2 cut(s)	224, 521
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeI	CATATG	1 cut(s)	110
NdeII	GATC	1 cut(s)	291
NlaIII	CATG	2 cut(s)	119, 415
NmuCI	GTSAC	2 cut(s)	80, 397
PkrI	GCNGC	1 cut(s)	133
Ppu21I	YACGTR	1 cut(s)	95
PshAI	GACNNNNGTC	1 cut(s)	87
PshBI	ATTAAT	1 cut(s)	317
PspFI	CCCAGC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	119
PvuII	CAGCTG	1 cut(s)	131
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	165, 317
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	1 cut(s)	291
Sau96I	GGNCC	1 cut(s)	119
SetI	ASST	8 cut(s)	26, 97, 124, 133, 200, 237, 393, 470
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	2 cut(s)	38, 461
SmoI	CTYRAG	2 cut(s)	38, 461
SnaBI	TACGTA	1 cut(s)	95
Sse9I	AATT	6 cut(s)	56, 224, 305, 314, 318, 521
SsiI	CCGC	1 cut(s)	174
SspI	AATATT	1 cut(s)	339
TaaI	ACNGT	2 cut(s)	100, 248
TaiI	ACGT	2 cut(s)	97, 237
TasI	AATT	6 cut(s)	56, 224, 305, 314, 318, 521
Tru1I	TTAA	2 cut(s)	165, 317
Tru9I	TTAA	2 cut(s)	165, 317
TscAI	CASTG	3 cut(s)	105, 387, 410
TseFI	GTSAC	2 cut(s)	80, 397
TseI	GCWGC	1 cut(s)	131
Tsp45I	GTSAC	2 cut(s)	80, 397
TspDTI	ATGAA	3 cut(s)	17, 42, 363
TspRI	CASTG	3 cut(s)	105, 387, 410
VpaK11BI	GGWCC	1 cut(s)	119
VspI	ATTAAT	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.