Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0008836

Physical Location & Seq

Genomic Coordinates Forward (+)

27685616 .. 27687564

Gene Structure 1949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G023120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGTTACATAGTCTGAAGCATCTCTCAGTTATTGGTCCCAATGAGAGCTTGGTAACATTGATCAATTTGGAGGCAATACCAAGTATGCGAAATAAACCTGTGTTTGAGAAATTGGAAGAATTGCATCTGGAGAGTATGGGTTCCCTGAAGGAGTTATGTTCTAGTGAATTACCATCTAGGTCTCTCTGGAATCTGAAGGTATTGCAGGTACATGATTGTCCTAAGTTGGGAAATGTCCTGTTACCGTCAAAATTGTTACAGAGACTGGCAAATCTGGAGAACCTATTCTGTAAGTGTGTGCCTGAAATGGAATATGTGTTTGGATGTGAAGGATTTGAGCTAGAACAATCAAAACTGAGAAAGATGAACTTGTTTGAGCTAGAAGCAGTAAAAAGCATATGTAATGGTCCTGCTCCACCTGCAATGTTCCAAGCGCTTCACAGTTTGTCAATTTACCGTTGCAAATTTCACGGATGTCTCTTCACATTTGATGTAGCTCAATGTCTTTTTCAAGTGGAAATCATTTCAGTACAGAGTTGCCCTATCTTGGAAAGAGTAATCGAAGCAAGCAAAGAATCAGAGCTCAGTAAGAAGACCGTTCTTCCAAAATTGAAGTACCTAGGCTTGGTGGATCTTCCTATGTTGTACAGTGGTAGTGCTGCTATTGATATGGAGTGTCCTTCATTGCAACACTTGTATGTGGAAGACTGCCCTCATGTTCCGGCCTCTGCTTATGACTTCGGGAGCAATAACCAAGTCATACTCAACGATCCACTGCATTACGCATCTCAGCAAGCCACAAAATTTGGCACACCCCTATCAGCATGGGATACTCTCATCAAGTCACGTCTCAAGGTCGGGGAAAAGATCTTAACATCGATGGAGCCTGAAATGATGCAGAGGGCGGTTGAATTCACGGGGAAGATGTCTCAAATCATACAGACGAAGCCCGAATTTGCAAAGAAGTTTTTACCTAGTTCGTTAGCGAAGCCTGAATTGTTGGAGATGATGCCTAGACTGATGGAGTTGCTGAATGGAAGTTTGACAGAGAAGAATCCTGAATCGATGGAGAATCTTACAGCGTTGGCGAATATCACTCCTGATCTGATGAATCATATACCTGCTGAGATTAGTGAGATGATGGATCTGATGACTAAATTGATGGAGGATACGAACTTTATCAAGTCCTTGACTGGAATCGTGGAGAACATCCCTGGAATCATGAACTTGCCTCGAATCATAGAGGACTTTCCTCGGTTGTTTGAGATTTTGCCAATGACTGGATCGGTGGAGAATACGCCTGGAATCATGGAGGACTTTGCTCAATTGATTGAGAATTCGCCTCAGATGGCTGAATCGTTGAAGGACTTTGCTCAATCGGTTGAGAATTTTCTGAATTTGCCTCAAATGACTGAATGGATGGAAATCATGGAGAACTTATCTCAGATGACTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

485

Amino Acids

54.7

Weight (kDa)

4.98

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_RPS2	PF23247	38 - 180	2.1e-19	Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2	PF23247	130 - 238	1.5e-10	Plant disease resistance protein RPS2-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05590
malus_domestica	MD15G1398400.v1.1
rosa_chinensis	RchiOBHm_Chr5g0079581 RchiOBHm_Chr6g0274621 RchiOBHm_Chr7g0212741
rosa_multiflora	Rmu_sc0000595.1_g000005 Rmu_sc0000595.1_g000014 Rmu_sc0000631.1_g000034 Rmu_sc0001148.1_g000042 Rmu_sc0003131.1_g000018 Rmu_sc0003450.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110810 Rroxscaffold_3G00240350 Rroxscaffold_6G00412400 Rroxscaffold_7G00194710
rosa_rugosa	Rorug03G0098100
rosa_samantha	Rh7AG267900 Rh7CG286900 Rh7CG342200 Rh7DG321400
rosa_wichuraiana	Rw5G042570 Rw5G042580 Rw7G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	427
Acc36I	ACCTGC	3 cut(s)	196, 427, 1129
AccB7I	CCANNNNNTGG	1 cut(s)	1280
AciI	CCGC	1 cut(s)	905
AclWI	GGATC	4 cut(s)	639, 764, 1152, 1291
AcsI	RAATTY	7 cut(s)	464, 803, 911, 953, 1336, 1387, 1396
AcuI	CTGAAG	3 cut(s)	35, 167, 215
AfaI	GTAC	4 cut(s)	210, 531, 617, 647
AfeI	AGCGCT	1 cut(s)	435
AfiI	CCNNNNNNNGG	4 cut(s)	227, 547, 625, 1280
AgsI	TTSAA	4 cut(s)	512, 613, 911, 1363
AjiI	CACGTC	1 cut(s)	848
AjnI	CCWGG	2 cut(s)	1213, 1300
AjuI	GAANNNNNNNTTGG	2 cut(s)	303, 335
AluBI	AGCT	5 cut(s)	48, 340, 379, 497, 583
AluI	AGCT	5 cut(s)	48, 340, 379, 497, 583
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	5 cut(s)	186, 256, 482, 854, 933
AlwI	GGATC	4 cut(s)	639, 764, 1152, 1291
AlwNI	CAGNNNCTG	1 cut(s)	265
Aor51HI	AGCGCT	1 cut(s)	435
AoxI	GGCC	1 cut(s)	723
ApeKI	GCWGC	1 cut(s)	659
ApoI	RAATTY	7 cut(s)	464, 803, 911, 953, 1336, 1387, 1396
Asp700I	GAANNNNTTC	1 cut(s)	284
AspA2I	CCTAGG	1 cut(s)	619
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	2 cut(s)	35, 407
AvaII	GGWCC	2 cut(s)	35, 407
AvrII	CCTAGG	1 cut(s)	619
BanII	GRGCYC	1 cut(s)	585
BbsI	GAAGAC	2 cut(s)	599, 711
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	1 cut(s)	646
BccI	CCATC	8 cut(s)	181, 874, 1015, 1060, 1135, 1156, 1342, 1414
BciT130I	CCWGG	2 cut(s)	1215, 1302
BciVI	GTATCC	2 cut(s)	823, 1162
BclI	TGATCA	1 cut(s)	60
BcoDI	GTCTC	5 cut(s)	186, 256, 482, 854, 933
BfaI	CTAG	7 cut(s)	162, 177, 341, 380, 620, 975, 1014
BfoI	RGCGCY	1 cut(s)	437
BfuAI	ACCTGC	3 cut(s)	196, 427, 1129
BfuI	GTATCC	2 cut(s)	823, 1162
BglII	AGATCT	1 cut(s)	867
BisI	GCNGC	1 cut(s)	660
BlnI	CCTAGG	1 cut(s)	619
BlsI	GCNGC	1 cut(s)	661
Bme1390I	CCNGG	2 cut(s)	1215, 1302
Bme18I	GGWCC	2 cut(s)	35, 407
BmgBI	CACGTC	1 cut(s)	848
BmgT120I	GGNCC	2 cut(s)	35, 407
BmiI	GGNNCC	3 cut(s)	37, 142, 885
BmrFI	CCNGG	2 cut(s)	1215, 1302
BmsI	GCATC	5 cut(s)	28, 133, 794, 885, 999
BpiI	GAAGAC	2 cut(s)	599, 711
BpmI	CTGGAG	2 cut(s)	149, 296
BpuEI	CTTGAG	1 cut(s)	836
Bsa29I	ATCGAT	2 cut(s)	878, 1064
BsaBI	GATNNNNATC	1 cut(s)	1424
BsaI	GGTCTC	1 cut(s)	186
BsaJI	CCNNGG	3 cut(s)	619, 1213, 1253
Bsc4I	CCNNNNNNNGG	4 cut(s)	227, 547, 625, 1280
Bse1I	ACTGG	3 cut(s)	270, 1198, 1285
Bse3DI	GCAATG	2 cut(s)	429, 683
Bse8I	GATNNNNATC	1 cut(s)	1424
BseBI	CCWGG	2 cut(s)	1215, 1302
BseCI	ATCGAT	2 cut(s)	878, 1064
BseDI	CCNNGG	3 cut(s)	619, 1213, 1253
BseGI	GGATG	4 cut(s)	329, 479, 1209, 1425
BseJI	GATNNNNATC	1 cut(s)	1424
BseLI	CCNNNNNNNGG	4 cut(s)	227, 547, 625, 1280
BseMI	GCAATG	2 cut(s)	429, 683
BseMII	CTCAG	7 cut(s)	39, 347, 598, 803, 1116, 1358, 1457
BseNI	ACTGG	3 cut(s)	270, 1198, 1285
BseXI	GCAGC	1 cut(s)	646
BshFI	GGCC	1 cut(s)	725
BshVI	ATCGAT	2 cut(s)	878, 1064
BsiHKAI	GWGCWC	1 cut(s)	585
BsiSI	CCGG	1 cut(s)	722
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	4 cut(s)	227, 547, 625, 1280
BsmAI	GTCTC	5 cut(s)	186, 256, 482, 854, 933
BsmBI	CGTCTC	1 cut(s)	854
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	725
Bso31I	GGTCTC	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp1407I	TGTACA	1 cut(s)	645
Bsp143I	GATC	7 cut(s)	60, 631, 769, 867, 1102, 1144, 1283
BspACI	CCGC	1 cut(s)	905
BspANI	GGCC	1 cut(s)	725
BspCNI	CTCAG	7 cut(s)	38, 348, 597, 802, 1117, 1357, 1456
BspDI	ATCGAT	2 cut(s)	878, 1064
BspHI	TCATGA	1 cut(s)	1221
BspLI	GGNNCC	3 cut(s)	37, 142, 885
BspMI	ACCTGC	3 cut(s)	196, 427, 1129
BspPI	GGATC	4 cut(s)	639, 764, 1152, 1291
BspTNI	GGTCTC	1 cut(s)	186
BsrDI	GCAATG	2 cut(s)	429, 683
BsrGI	TGTACA	1 cut(s)	645
BsrI	ACTGG	3 cut(s)	270, 1198, 1285
BssECI	CCNNGG	3 cut(s)	619, 1213, 1253
BssMI	GATC	7 cut(s)	60, 631, 769, 867, 1102, 1144, 1283
BssT1I	CCWWGG	1 cut(s)	619
Bst2UI	CCWGG	2 cut(s)	1215, 1302
Bst4CI	ACNGT	5 cut(s)	246, 443, 458, 598, 650
Bst6I	CTCTTC	1 cut(s)	485
BstAUI	TGTACA	1 cut(s)	645
BstC8I	GCNNGC	2 cut(s)	568, 795
BstDEI	CTNAG	8 cut(s)	25, 222, 356, 584, 789, 1125, 1344, 1443
BstF5I	GGATG	4 cut(s)	329, 479, 1209, 1425
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	7 cut(s)	63, 634, 772, 870, 1105, 1147, 1286
BstMAI	GTCTC	5 cut(s)	186, 256, 482, 854, 933
BstMBI	GATC	7 cut(s)	60, 631, 769, 867, 1102, 1144, 1283
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstNI	CCWGG	2 cut(s)	1215, 1302
BstSCI	CCNGG	2 cut(s)	1213, 1300
BstV1I	GCAGC	1 cut(s)	646
BstV2I	GAAGAC	2 cut(s)	599, 711
BstX2I	RGATCY	3 cut(s)	631, 867, 1144
BstYI	RGATCY	3 cut(s)	631, 867, 1144
Bsu15I	ATCGAT	2 cut(s)	878, 1064
BsuI	GTATCC	2 cut(s)	823, 1162
BsuRI	GGCC	1 cut(s)	725
BsuTUI	ATCGAT	2 cut(s)	878, 1064
BtrI	CACGTC	1 cut(s)	848
BtsCI	GGATG	4 cut(s)	329, 479, 1209, 1425
BtsI	GCAGTG	1 cut(s)	773
BtsIMutI	CAGTG	2 cut(s)	655, 773
BveI	ACCTGC	3 cut(s)	196, 427, 1129
Cac8I	GCNNGC	2 cut(s)	568, 795
CaiI	CAGNNNCTG	1 cut(s)	265
CciI	TCATGA	1 cut(s)	1221
CfoI	GCGC	1 cut(s)	436
Cfr13I	GGNCC	2 cut(s)	35, 407
ClaI	ATCGAT	2 cut(s)	878, 1064
Csp6I	GTAC	4 cut(s)	209, 530, 616, 646
CspCI	CAANNNNNGTGG	2 cut(s)	787, 822
CviAII	CATG	6 cut(s)	212, 716, 825, 1222, 1309, 1429
CviQI	GTAC	4 cut(s)	209, 530, 616, 646
DdeI	CTNAG	8 cut(s)	25, 222, 356, 584, 789, 1125, 1344, 1443
DpnI	GATC	7 cut(s)	62, 633, 771, 869, 1104, 1146, 1285
DpnII	GATC	7 cut(s)	60, 631, 769, 867, 1102, 1144, 1283
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
Ecl136II	GAGCTC	1 cut(s)	583
Eco130I	CCWWGG	1 cut(s)	619
Eco24I	GRGCYC	1 cut(s)	585
Eco31I	GGTCTC	1 cut(s)	186
Eco47I	GGWCC	2 cut(s)	35, 407
Eco47III	AGCGCT	1 cut(s)	435
Eco53kI	GAGCTC	1 cut(s)	583
Eco57I	CTGAAG	3 cut(s)	35, 167, 215
EcoICRI	GAGCTC	1 cut(s)	583
EcoRI	GAATTC	2 cut(s)	911, 1336
EcoRII	CCWGG	2 cut(s)	1213, 1300
EcoT14I	CCWWGG	1 cut(s)	619
EcoT38I	GRGCYC	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	619
Esp3I	CGTCTC	1 cut(s)	854
FaeI	CATG	6 cut(s)	215, 719, 828, 1225, 1312, 1432
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	6 cut(s)	211, 715, 824, 1221, 1308, 1428
FauNDI	CATATG	1 cut(s)	398
FbaI	TGATCA	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	660
FokI	GGATG	4 cut(s)	336, 486, 1196, 1432
FriOI	GRGCYC	1 cut(s)	585
Fsp4HI	GCNGC	1 cut(s)	660
FspBI	CTAG	7 cut(s)	162, 177, 341, 380, 620, 975, 1014
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	1 cut(s)	660
GsuI	CTGGAG	2 cut(s)	149, 296
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	1 cut(s)	725
HapII	CCGG	1 cut(s)	722
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	6 cut(s)	215, 719, 828, 1225, 1312, 1432
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HpaII	CCGG	1 cut(s)	722
Hpy188I	TCNGA	8 cut(s)	15, 195, 580, 1107, 1149, 1347, 1395, 1446
Hpy188III	TCNNGA	7 cut(s)	128, 187, 275, 742, 1058, 1100, 1222
HpyAV	CCTTC	5 cut(s)	142, 190, 323, 690, 1357
HpyCH4III	ACNGT	5 cut(s)	246, 443, 458, 598, 650
HpyCH4IV	ACGT	1 cut(s)	847
HpyCH4V	TGCA	8 cut(s)	124, 205, 422, 462, 688, 778, 898, 959
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	8 cut(s)	25, 222, 356, 584, 789, 1125, 1344, 1443
HpySE526I	ACGT	1 cut(s)	847
Hsp92II	CATG	6 cut(s)	215, 719, 828, 1225, 1312, 1432
HspAI	GCGC	1 cut(s)	434
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	7 cut(s)	60, 631, 769, 867, 1102, 1144, 1283
LmnI	GCTCC	3 cut(s)	418, 744, 883
Lsp1109I	GCAGC	1 cut(s)	646
LweI	GCATC	5 cut(s)	28, 133, 794, 885, 999
MaeI	CTAG	7 cut(s)	162, 177, 341, 380, 620, 975, 1014
MaeII	ACGT	1 cut(s)	847
MaeIII	GTNAC	5 cut(s)	3, 52, 240, 255, 843
MalI	GATC	7 cut(s)	62, 633, 771, 869, 1104, 1146, 1285
MboI	GATC	7 cut(s)	60, 631, 769, 867, 1102, 1144, 1283
MboII	GAAGA	8 cut(s)	128, 472, 593, 604, 626, 716, 934, 1063
MfeI	CAATTG	1 cut(s)	1325
MflI	RGATCY	3 cut(s)	631, 867, 1144
MhlI	GDGCHC	1 cut(s)	585
MmeI	TCCRAC	1 cut(s)	981
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	1 cut(s)	872
MslI	CAYNNNNRTG	1 cut(s)	696
MspI	CCGG	1 cut(s)	722
MspR9I	CCNGG	2 cut(s)	1215, 1302
MunI	CAATTG	1 cut(s)	1325
MvaI	CCWGG	2 cut(s)	1215, 1302
MwoI	GCNNNNNNNGC	1 cut(s)	419
NdeI	CATATG	1 cut(s)	398
NdeII	GATC	7 cut(s)	60, 631, 769, 867, 1102, 1144, 1283
NlaIII	CATG	6 cut(s)	215, 719, 828, 1225, 1312, 1432
NlaIV	GGNNCC	3 cut(s)	37, 142, 885
NmuCI	GTSAC	1 cut(s)	843
PagI	TCATGA	1 cut(s)	1221
PaqCI	CACCTGC	1 cut(s)	427
PdmI	GAANNNNTTC	1 cut(s)	284
PflMI	CCANNNNNTGG	1 cut(s)	1280
PkrI	GCNGC	1 cut(s)	661
Psp124BI	GAGCTC	1 cut(s)	585
Psp6I	CCWGG	2 cut(s)	1213, 1300
PspGI	CCWGG	2 cut(s)	1213, 1300
PspN4I	GGNNCC	3 cut(s)	37, 142, 885
PspPI	GGNCC	2 cut(s)	35, 407
PstNI	CAGNNNCTG	1 cut(s)	265
PsuI	RGATCY	3 cut(s)	631, 867, 1144
RsaI	GTAC	4 cut(s)	210, 531, 617, 647
RsaNI	GTAC	4 cut(s)	209, 530, 616, 646
RseI	CAYNNNNRTG	1 cut(s)	696
SacI	GAGCTC	1 cut(s)	585
SaqAI	TTAA	1 cut(s)	872
SatI	GCNGC	1 cut(s)	660
Sau3AI	GATC	7 cut(s)	60, 631, 769, 867, 1102, 1144, 1283
Sau96I	GGNCC	2 cut(s)	35, 407
ScrFI	CCNGG	2 cut(s)	1215, 1302
SduI	GDGCHC	1 cut(s)	585
SfaNI	GCATC	5 cut(s)	28, 133, 794, 885, 999
SinI	GGWCC	2 cut(s)	35, 407
SmiMI	CAYNNNNRTG	1 cut(s)	696
SmlI	CTYRAG	1 cut(s)	851
SmoI	CTYRAG	1 cut(s)	851
SsiI	CCGC	1 cut(s)	905
SspMI	CTAG	7 cut(s)	162, 177, 341, 380, 620, 975, 1014
SstI	GAGCTC	1 cut(s)	585
StyD4I	CCNGG	2 cut(s)	1213, 1300
StyI	CCWWGG	1 cut(s)	619
TaaI	ACNGT	5 cut(s)	246, 443, 458, 598, 650
TaiI	ACGT	1 cut(s)	850
TaqI	TCGA	4 cut(s)	561, 878, 1064, 1234
TatI	WGTACW	2 cut(s)	529, 645
Tru1I	TTAA	1 cut(s)	872
Tru9I	TTAA	1 cut(s)	872
TscAI	CASTG	2 cut(s)	655, 780
TseFI	GTSAC	1 cut(s)	843
TseI	GCWGC	1 cut(s)	659
Tsp45I	GTSAC	1 cut(s)	843
TspDTI	ATGAA	4 cut(s)	380, 672, 1124, 1238
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	2 cut(s)	655, 780
Van91I	CCANNNNNTGG	1 cut(s)	1280
VpaK11BI	GGWCC	2 cut(s)	35, 407
XapI	RAATTY	7 cut(s)	464, 803, 911, 953, 1336, 1387, 1396
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XmaJI	CCTAGG	1 cut(s)	619
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	7 cut(s)	162, 177, 341, 380, 620, 975, 1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.