Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008836

Physical Location & Seq

Genomic Coordinates Forward (+)

29170181 .. 29171024

Gene Structure 844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG286900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTTAGCTATCGAAACCAGAATCCAGCCGGAATCAATTATATTTGGCACACCCCTATCAGCATGGGATACTCTCATCAAGTCACGTCTCAAGGTCGGGGAAAAGATCTTAACATCGATGGAGCCTGAAATGATGCAGAGGGCGGTTGAATTCACGGGGAAGATGTCTCAAATCATACAGACGAAGCCCGAATTTGCAAAGAAGTTTTTACCTAGTTCGTTAGCGAAGCCTGAATTGTTGGAGATGATGCCTAGACTGATGGAGTTGCTGAATGGAAGTTTGACAGAGAAGAATCCTGAATCGATGGAGAATCTTATAGCGTTGGCGAATATCACTCCTGATCTGATGAATCATATACCTGCTGAGATTAGTGAGATGATGGATCTGACGACTAAATTGATGGAGGATACGAACTTTATCAAGTCCTTGACTGGAATCGTGGAGAACATCCCTGGAATCATGAACTTGCCTCGAATCATAGAGGACTTTCCTCGATTGTTTGAGATTTTGCCAATGACTGGATCGGTGGAGAATATGCCTGGAATCATGGAGGACTTTGCTCAATTGATTGAGAATTCGCCTCAGATGGCTGAATCGTTGAAGGACTTTGCTCAATCGGTTGAGAATTTTCTGAATTTGCCTCAAATGACTGAATGGATGGGAATCATGGAGAACTTATCTCAGATGACTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

26.19

Weight (kDa)

4.51

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05590
malus_domestica	MD15G1398400.v1.1
rosa_chinensis	RchiOBHm_Chr5g0079581 RchiOBHm_Chr6g0274621 RchiOBHm_Chr7g0212741
rosa_multiflora	Rmu_sc0000595.1_g000005 Rmu_sc0000595.1_g000014 Rmu_sc0000631.1_g000034 Rmu_sc0001148.1_g000042 Rmu_sc0003131.1_g000018 Rmu_sc0003450.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110810 Rroxscaffold_3G00240350 Rroxscaffold_6G00412400 Rroxscaffold_7G00194710
rosa_rugosa	Rorug03G0098100
rosa_samantha	Rh7AG267900 Rh7CG286900 Rh7CG342200 Rh7DG321400
rosa_wichuraiana	Rw5G042570 Rw5G042580 Rw7G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	367
AccB7I	CCANNNNNTGG	1 cut(s)	518
AciI	CCGC	1 cut(s)	143
AclWI	GGATC	2 cut(s)	390, 529
AcsI	RAATTY	5 cut(s)	149, 191, 574, 625, 634
AfiI	CCNNNNNNNGG	1 cut(s)	518
AgsI	TTSAA	2 cut(s)	149, 601
AjiI	CACGTC	1 cut(s)	86
AjnI	CCWGG	2 cut(s)	451, 538
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	92, 171
AlwI	GGATC	2 cut(s)	390, 529
ApoI	RAATTY	5 cut(s)	149, 191, 574, 625, 634
BccI	CCATC	7 cut(s)	112, 253, 298, 373, 394, 580, 652
BciT130I	CCWGG	2 cut(s)	453, 540
BciVI	GTATCC	2 cut(s)	61, 400
BcoDI	GTCTC	2 cut(s)	92, 171
BfaI	CTAG	2 cut(s)	213, 252
BfuAI	ACCTGC	1 cut(s)	367
BfuI	GTATCC	2 cut(s)	61, 400
BglII	AGATCT	1 cut(s)	105
Bme1390I	CCNGG	2 cut(s)	453, 540
BmgBI	CACGTC	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	123
BmrFI	CCNGG	2 cut(s)	453, 540
BmsI	GCATC	2 cut(s)	123, 237
BpuEI	CTTGAG	1 cut(s)	74
Bsa29I	ATCGAT	2 cut(s)	116, 302
BsaBI	GATNNNNATC	1 cut(s)	662
BsaJI	CCNNGG	1 cut(s)	451
Bsc4I	CCNNNNNNNGG	1 cut(s)	518
Bse1I	ACTGG	2 cut(s)	436, 523
Bse8I	GATNNNNATC	1 cut(s)	662
BseBI	CCWGG	2 cut(s)	453, 540
BseCI	ATCGAT	2 cut(s)	116, 302
BseDI	CCNNGG	1 cut(s)	451
BseGI	GGATG	2 cut(s)	447, 663
BseJI	GATNNNNATC	1 cut(s)	662
BseLI	CCNNNNNNNGG	1 cut(s)	518
BseMII	CTCAG	3 cut(s)	354, 596, 695
BseNI	ACTGG	2 cut(s)	436, 523
BshVI	ATCGAT	2 cut(s)	116, 302
BsiSI	CCGG	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	518
BsmAI	GTCTC	2 cut(s)	92, 171
BsmBI	CGTCTC	1 cut(s)	92
Bsp143I	GATC	4 cut(s)	105, 340, 382, 521
BspACI	CCGC	1 cut(s)	143
BspCNI	CTCAG	3 cut(s)	355, 595, 694
BspDI	ATCGAT	2 cut(s)	116, 302
BspHI	TCATGA	1 cut(s)	459
BspLI	GGNNCC	1 cut(s)	123
BspMI	ACCTGC	1 cut(s)	367
BspPI	GGATC	2 cut(s)	390, 529
BsrI	ACTGG	2 cut(s)	436, 523
BssECI	CCNNGG	1 cut(s)	451
BssMI	GATC	4 cut(s)	105, 340, 382, 521
Bst2UI	CCWGG	2 cut(s)	453, 540
BstDEI	CTNAG	3 cut(s)	363, 582, 681
BstF5I	GGATG	2 cut(s)	447, 663
BstKTI	GATC	4 cut(s)	108, 343, 385, 524
BstMAI	GTCTC	2 cut(s)	92, 171
BstMBI	GATC	4 cut(s)	105, 340, 382, 521
BstNI	CCWGG	2 cut(s)	453, 540
BstSCI	CCNGG	2 cut(s)	451, 538
BstX2I	RGATCY	2 cut(s)	105, 382
BstYI	RGATCY	2 cut(s)	105, 382
Bsu15I	ATCGAT	2 cut(s)	116, 302
BsuI	GTATCC	2 cut(s)	61, 400
BsuTUI	ATCGAT	2 cut(s)	116, 302
BtrI	CACGTC	1 cut(s)	86
BtsCI	GGATG	2 cut(s)	447, 663
BveI	ACCTGC	1 cut(s)	367
CciI	TCATGA	1 cut(s)	459
ClaI	ATCGAT	2 cut(s)	116, 302
CviAII	CATG	4 cut(s)	63, 460, 547, 667
CviJI	RGCY	6 cut(s)	8, 28, 124, 187, 229, 590
CviKI_1	RGCY	6 cut(s)	8, 28, 124, 187, 229, 590
DdeI	CTNAG	3 cut(s)	363, 582, 681
DpnI	GATC	4 cut(s)	107, 342, 384, 523
DpnII	GATC	4 cut(s)	105, 340, 382, 521
EcoRI	GAATTC	2 cut(s)	149, 574
EcoRII	CCWGG	2 cut(s)	451, 538
Esp3I	CGTCTC	1 cut(s)	92
FaeI	CATG	4 cut(s)	66, 463, 550, 670
FatI	CATG	4 cut(s)	62, 459, 546, 666
FokI	GGATG	2 cut(s)	434, 670
FspBI	CTAG	2 cut(s)	213, 252
HapII	CCGG	1 cut(s)	29
Hin1II	CATG	4 cut(s)	66, 463, 550, 670
HpaII	CCGG	1 cut(s)	29
Hpy188I	TCNGA	5 cut(s)	345, 387, 585, 633, 684
Hpy188III	TCNNGA	3 cut(s)	296, 338, 460
HpyAV	CCTTC	1 cut(s)	595
HpyCH4IV	ACGT	1 cut(s)	85
HpyCH4V	TGCA	2 cut(s)	136, 197
HpyF3I	CTNAG	3 cut(s)	363, 582, 681
HpySE526I	ACGT	1 cut(s)	85
Hsp92II	CATG	4 cut(s)	66, 463, 550, 670
Kzo9I	GATC	4 cut(s)	105, 340, 382, 521
LmnI	GCTCC	1 cut(s)	121
LweI	GCATC	2 cut(s)	123, 237
MaeI	CTAG	2 cut(s)	213, 252
MaeII	ACGT	1 cut(s)	85
MaeIII	GTNAC	1 cut(s)	81
MalI	GATC	4 cut(s)	107, 342, 384, 523
MboI	GATC	4 cut(s)	105, 340, 382, 521
MboII	GAAGA	2 cut(s)	172, 301
MfeI	CAATTG	1 cut(s)	563
MflI	RGATCY	2 cut(s)	105, 382
MluCI	AATT	9 cut(s)	36, 149, 191, 233, 395, 563, 574, 625, 634
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	8 cut(s)	132, 397, 475, 480, 501, 544, 591, 651
MseI	TTAA	1 cut(s)	110
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	2 cut(s)	453, 540
MunI	CAATTG	1 cut(s)	563
MvaI	CCWGG	2 cut(s)	453, 540
NdeII	GATC	4 cut(s)	105, 340, 382, 521
NlaIII	CATG	4 cut(s)	66, 463, 550, 670
NlaIV	GGNNCC	1 cut(s)	123
NmuCI	GTSAC	1 cut(s)	81
PagI	TCATGA	1 cut(s)	459
PflMI	CCANNNNNTGG	1 cut(s)	518
Psp6I	CCWGG	2 cut(s)	451, 538
PspGI	CCWGG	2 cut(s)	451, 538
PspN4I	GGNNCC	1 cut(s)	123
PsuI	RGATCY	2 cut(s)	105, 382
SaqAI	TTAA	1 cut(s)	110
Sau3AI	GATC	4 cut(s)	105, 340, 382, 521
ScrFI	CCNGG	2 cut(s)	453, 540
SetI	ASST	5 cut(s)	10, 88, 96, 214, 361
SfaNI	GCATC	2 cut(s)	123, 237
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	9 cut(s)	36, 149, 191, 233, 395, 563, 574, 625, 634
SsiI	CCGC	1 cut(s)	143
SspMI	CTAG	2 cut(s)	213, 252
StyD4I	CCNGG	2 cut(s)	451, 538
TaiI	ACGT	1 cut(s)	88
TaqI	TCGA	5 cut(s)	12, 116, 302, 472, 493
TasI	AATT	9 cut(s)	36, 149, 191, 233, 395, 563, 574, 625, 634
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TseFI	GTSAC	1 cut(s)	81
Tsp45I	GTSAC	1 cut(s)	81
TspDTI	ATGAA	2 cut(s)	362, 476
Van91I	CCANNNNNTGG	1 cut(s)	518
XapI	RAATTY	5 cut(s)	149, 191, 574, 625, 634
XspI	CTAG	2 cut(s)	213, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.