Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014388

Physical Location & Seq

Genomic Coordinates Forward (+)

23918181 .. 23921304

Gene Structure 3124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G240200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCTTTGCCATCACACAAAGCTGTGACATTGACCCACGTGAGGTACCAGAGGGGTGACAAACTGGGTTACTTCCTGGCATGGATTTCTCTGGTCCCAGTCTTCATAAGCCTCGGTGGGTTCGTCTCTCACTTCATCTTCCGCCGCGAGCTCCAAGGCATGTTCTTCGCTCTGGGCCTCATAATTTCTCAGTTCGTCAACGAGTTCATCAAGACATCGGTCCAGCAAGCTCGGCCCGAGACCTGCGCTCTGCTTGAGATGTGTGATTCGCATGGATGGCCTTCGAGCCACTCTCAGTACATGTTCTTCTTTGCTATCTACTTCACCCTCATGACGTATAAAGGGATTGGGCTCTGGCACACGAAGAACAAGTTTACTGTGATTTTTTTGCCTTGGGCTTTGGCTTTGCTCACTATGTATTCGCGGGTGTATTTGGGTTACCACACTGTGGCTCAGGTGCTTGCTGGTTCCGCTTTGGGAGTTTTTCTTGGGGCTCTGTGGTTTTGGGTTGTGAATTCTGTGCTTTACTCTTACTTTCCGGTTATCGAAGAGAGCTGGTTTGGGAGAGCGTTTTACATCAAGGATACTTCTCATATACCCAATGTGTTGAAGTTCGAGTATGACAATGCCAGGGATGCTAGGAACAAACTGGCTGCCAAGAGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009856 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0022414 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0048856 GO:0048868 GO:0051704 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

223

Amino Acids

25.55

Weight (kDa)

9.41

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03080
fragaria_vesca	FvH4_6g15490 FvH4_6g15490 FvH4_6g15490
malus_domestica	MD04G1105500.v1.1 MD12G1123000.v1.1
prunus_persica	Prupe.6G240200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0468971
rosa_laevigata	RLG00000024394
rosa_multiflora	Rmu_sc0001639.1_g000006
rosa_roxburghii	Rroxscaffold_6G00412410
rosa_rugosa	Rorug03G0098000 Rorug03G0098100
rosa_samantha	Rh3AG147700 Rh3BG170300 Rh3DG204800
rosa_wichuraiana	Rw3G013900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	251
Acc65I	GGTACC	1 cut(s)	45
AccB1I	GGYRCC	1 cut(s)	45
AccB7I	CCANNNNNTGG	1 cut(s)	448
AccII	CGCG	2 cut(s)	147, 424
AciI	CCGC	4 cut(s)	142, 145, 424, 471
AcsI	RAATTY	1 cut(s)	514
AcvI	CACGTG	1 cut(s)	40
AdeI	CACNNNGTG	1 cut(s)	448
AfaI	GTAC	2 cut(s)	47, 299
AfiI	CCNNNNNNNGG	2 cut(s)	42, 448
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	1 cut(s)	610
AjnI	CCWGG	2 cut(s)	75, 629
AluBI	AGCT	4 cut(s)	23, 151, 230, 555
AluI	AGCT	4 cut(s)	23, 151, 230, 555
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	2 cut(s)	130, 233
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	3 cut(s)	175, 233, 278
ApeKI	GCWGC	1 cut(s)	653
ApoI	RAATTY	1 cut(s)	514
Asp718I	GGTACC	1 cut(s)	45
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	4 cut(s)	94, 175, 220, 234
AsuHPI	GGTGA	2 cut(s)	68, 316
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	2 cut(s)	94, 220
BanI	GGYRCC	1 cut(s)	45
BanII	GRGCYC	3 cut(s)	153, 354, 496
BarI	GAAGNNNNNNTAC	2 cut(s)	290, 322
BbrPI	CACGTG	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	640
BccI	CCATC	2 cut(s)	19, 270
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BciT130I	CCWGG	2 cut(s)	77, 631
BciVI	GTATCC	1 cut(s)	577
BcoDI	GTCTC	2 cut(s)	130, 233
BfaI	CTAG	1 cut(s)	639
BfuAI	ACCTGC	1 cut(s)	251
BfuI	GTATCC	1 cut(s)	577
BisI	GCNGC	2 cut(s)	145, 654
BlsI	GCNGC	2 cut(s)	146, 655
Bme1390I	CCNGG	2 cut(s)	77, 631
Bme18I	GGWCC	2 cut(s)	94, 220
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	4 cut(s)	94, 175, 220, 234
BmiI	GGNNCC	3 cut(s)	47, 96, 469
BmrFI	CCNGG	2 cut(s)	77, 631
BmrI	ACTGGG	2 cut(s)	74, 92
BmsI	GCATC	1 cut(s)	625
BmuI	ACTGGG	2 cut(s)	74, 92
BoxI	GACNNNNGTC	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	94
BplI	GAGNNNNNCTC	2 cut(s)	277, 309
Bpu10I	CCTNAGC	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	275
BsaAI	YACGTR	1 cut(s)	40
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	4 cut(s)	112, 154, 392, 630
BsaWI	WCCGGW	1 cut(s)	538
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 448
Bse1I	ACTGG	3 cut(s)	69, 98, 654
BseBI	CCWGG	2 cut(s)	77, 631
BseDI	CCNNGG	4 cut(s)	112, 154, 392, 630
BseGI	GGATG	2 cut(s)	281, 640
BseLI	CCNNNNNNNGG	2 cut(s)	42, 448
BseMII	CTCAG	3 cut(s)	203, 308, 467
BseNI	ACTGG	3 cut(s)	69, 98, 654
BseXI	GCAGC	1 cut(s)	640
Bsh1236I	CGCG	2 cut(s)	147, 424
BshFI	GGCC	3 cut(s)	177, 235, 280
BshNI	GGYRCC	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	539
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	42, 448
BsmAI	GTCTC	2 cut(s)	130, 233
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	3 cut(s)	177, 235, 280
Bso31I	GGTCTC	1 cut(s)	233
BsoBI	CYCGRG	1 cut(s)	236
Bsp1286I	GDGCHC	3 cut(s)	153, 354, 496
BspACI	CCGC	4 cut(s)	142, 145, 424, 471
BspANI	GGCC	3 cut(s)	177, 235, 280
BspCNI	CTCAG	3 cut(s)	202, 307, 466
BspFNI	CGCG	2 cut(s)	147, 424
BspHI	TCATGA	1 cut(s)	330
BspLI	GGNNCC	3 cut(s)	47, 96, 469
BspMI	ACCTGC	1 cut(s)	251
BspT107I	GGYRCC	1 cut(s)	45
BspTNI	GGTCTC	1 cut(s)	233
BsrI	ACTGG	3 cut(s)	69, 98, 654
BssECI	CCNNGG	4 cut(s)	112, 154, 392, 630
BssT1I	CCWWGG	2 cut(s)	154, 392
Bst2UI	CCWGG	2 cut(s)	77, 631
Bst4CI	ACNGT	2 cut(s)	379, 448
Bst6I	CTCTTC	1 cut(s)	543
BstBAI	YACGTR	1 cut(s)	40
BstC8I	GCNNGC	3 cut(s)	149, 228, 462
BstDEI	CTNAG	3 cut(s)	189, 294, 453
BstEII	GGTNACC	1 cut(s)	437
BstF5I	GGATG	2 cut(s)	281, 640
BstFNI	CGCG	2 cut(s)	147, 424
BstHHI	GCGC	1 cut(s)	248
BstMAI	GTCTC	2 cut(s)	130, 233
BstMWI	GCNNNNNNNGC	4 cut(s)	232, 277, 470, 635
BstNI	CCWGG	2 cut(s)	77, 631
BstNSI	RCATGY	2 cut(s)	163, 304
BstPAI	GACNNNNGTC	1 cut(s)	218
BstPI	GGTNACC	1 cut(s)	437
BstSCI	CCNGG	2 cut(s)	75, 629
BstUI	CGCG	2 cut(s)	147, 424
BstV1I	GCAGC	1 cut(s)	640
BstV2I	GAAGAC	1 cut(s)	94
BsuI	GTATCC	1 cut(s)	577
BsuRI	GGCC	3 cut(s)	177, 235, 280
BtsCI	GGATG	2 cut(s)	281, 640
BtsIMutI	CAGTG	1 cut(s)	444
BveI	ACCTGC	1 cut(s)	251
Cac8I	GCNNGC	3 cut(s)	149, 228, 462
CciI	TCATGA	1 cut(s)	330
CfoI	GCGC	1 cut(s)	248
Cfr13I	GGNCC	4 cut(s)	94, 175, 220, 234
Csp6I	GTAC	2 cut(s)	46, 298
CviAII	CATG	5 cut(s)	81, 160, 272, 301, 331
CviQI	GTAC	2 cut(s)	46, 298
DdeI	CTNAG	3 cut(s)	189, 294, 453
DraIII	CACNNNGTG	1 cut(s)	448
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
EciI	GGCGGA	1 cut(s)	131
Ecl136II	GAGCTC	1 cut(s)	151
Eco130I	CCWWGG	2 cut(s)	154, 392
Eco24I	GRGCYC	3 cut(s)	153, 354, 496
Eco31I	GGTCTC	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	94, 220
Eco53kI	GAGCTC	1 cut(s)	151
Eco72I	CACGTG	1 cut(s)	40
Eco88I	CYCGRG	1 cut(s)	236
Eco91I	GGTNACC	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	151
EcoO65I	GGTNACC	1 cut(s)	437
EcoRI	GAATTC	1 cut(s)	514
EcoRII	CCWGG	2 cut(s)	75, 629
EcoT14I	CCWWGG	2 cut(s)	154, 392
EcoT38I	GRGCYC	3 cut(s)	153, 354, 496
ErhI	CCWWGG	2 cut(s)	154, 392
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	5 cut(s)	84, 163, 275, 304, 334
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	5 cut(s)	80, 159, 271, 300, 330
FauI	CCCGC	1 cut(s)	417
Fnu4HI	GCNGC	2 cut(s)	145, 654
FokI	GGATG	2 cut(s)	288, 647
FriOI	GRGCYC	3 cut(s)	153, 354, 496
Fsp4HI	GCNGC	2 cut(s)	145, 654
FspBI	CTAG	1 cut(s)	639
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	2 cut(s)	145, 654
HaeIII	GGCC	3 cut(s)	177, 235, 280
HapII	CCGG	1 cut(s)	539
HhaI	GCGC	1 cut(s)	248
Hin1II	CATG	5 cut(s)	84, 163, 275, 304, 334
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	1 cut(s)	539
HphI	GGTGA	2 cut(s)	68, 316
Hpy166II	GTNNAC	2 cut(s)	199, 375
Hpy188III	TCNNGA	2 cut(s)	211, 331
Hpy8I	GTNNAC	2 cut(s)	199, 375
HpyAV	CCTTC	1 cut(s)	291
HpyCH4III	ACNGT	2 cut(s)	379, 448
HpyCH4IV	ACGT	2 cut(s)	39, 335
HpyF10VI	GCNNNNNNNGC	4 cut(s)	232, 277, 470, 635
HpyF3I	CTNAG	3 cut(s)	189, 294, 453
HpySE526I	ACGT	2 cut(s)	39, 335
Hsp92II	CATG	5 cut(s)	84, 163, 275, 304, 334
HspAI	GCGC	1 cut(s)	246
KpnI	GGTACC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	156
Lsp1109I	GCAGC	1 cut(s)	640
LweI	GCATC	1 cut(s)	625
MaeI	CTAG	1 cut(s)	639
MaeII	ACGT	2 cut(s)	39, 335
MaeIII	GTNAC	5 cut(s)	25, 56, 68, 437, 662
MboII	GAAGA	6 cut(s)	94, 130, 157, 298, 376, 560
MhlI	GDGCHC	3 cut(s)	153, 354, 496
MluCI	AATT	2 cut(s)	183, 514
MnlI	CCTC	5 cut(s)	36, 45, 122, 188, 338
MslI	CAYNNNNRTG	1 cut(s)	329
MspI	CCGG	1 cut(s)	539
MspR9I	CCNGG	2 cut(s)	77, 631
MvaI	CCWGG	2 cut(s)	77, 631
MvnI	CGCG	2 cut(s)	147, 424
MwoI	GCNNNNNNNGC	4 cut(s)	232, 277, 470, 635
NlaIII	CATG	5 cut(s)	84, 163, 275, 304, 334
NlaIV	GGNNCC	3 cut(s)	47, 96, 469
NmeAIII	GCCGAG	1 cut(s)	211
NmuCI	GTSAC	2 cut(s)	25, 56
NspI	RCATGY	2 cut(s)	163, 304
PagI	TCATGA	1 cut(s)	330
PciI	ACATGT	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	266
PflMI	CCANNNNNTGG	1 cut(s)	448
PkrI	GCNGC	2 cut(s)	146, 655
PmaCI	CACGTG	1 cut(s)	40
PmlI	CACGTG	1 cut(s)	40
Ppu21I	YACGTR	1 cut(s)	40
PscI	ACATGT	1 cut(s)	300
PshAI	GACNNNNGTC	1 cut(s)	218
Psp124BI	GAGCTC	1 cut(s)	153
Psp6I	CCWGG	2 cut(s)	75, 629
PspCI	CACGTG	1 cut(s)	40
PspEI	GGTNACC	1 cut(s)	437
PspGI	CCWGG	2 cut(s)	75, 629
PspN4I	GGNNCC	3 cut(s)	47, 96, 469
PspPI	GGNCC	4 cut(s)	94, 175, 220, 234
RsaI	GTAC	2 cut(s)	47, 299
RsaNI	GTAC	2 cut(s)	46, 298
RseI	CAYNNNNRTG	1 cut(s)	329
SacI	GAGCTC	1 cut(s)	153
SatI	GCNGC	2 cut(s)	145, 654
Sau96I	GGNCC	4 cut(s)	94, 175, 220, 234
ScrFI	CCNGG	2 cut(s)	77, 631
SduI	GDGCHC	3 cut(s)	153, 354, 496
SetI	ASST	9 cut(s)	25, 42, 47, 153, 232, 245, 338, 459, 557
SfaNI	GCATC	1 cut(s)	625
SinI	GGWCC	2 cut(s)	94, 220
SmiMI	CAYNNNNRTG	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	2 cut(s)	183, 514
SsiI	CCGC	4 cut(s)	142, 145, 424, 471
SspMI	CTAG	1 cut(s)	639
SstI	GAGCTC	1 cut(s)	153
StyD4I	CCNGG	2 cut(s)	75, 629
StyI	CCWWGG	2 cut(s)	154, 392
TaaI	ACNGT	2 cut(s)	379, 448
TaiI	ACGT	2 cut(s)	42, 338
TaqI	TCGA	3 cut(s)	284, 546, 615
TaqII	GACCGA	1 cut(s)	208
TasI	AATT	2 cut(s)	183, 514
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	266
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	2 cut(s)	25, 56
TseI	GCWGC	1 cut(s)	653
Tsp45I	GTSAC	2 cut(s)	25, 56
TspDTI	ATGAA	3 cut(s)	94, 124, 196
TspRI	CASTG	1 cut(s)	451
Van91I	CCANNNNNTGG	1 cut(s)	448
VpaK11BI	GGWCC	2 cut(s)	94, 220
XapI	RAATTY	1 cut(s)	514
XceI	RCATGY	2 cut(s)	163, 304
XspI	CTAG	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.