Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015511

Physical Location & Seq

Genomic Coordinates Forward (+)

862556 .. 864176

Gene Structure 1621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G03455.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGGGAGAAGCATATTTTCCTTTTTCACTAAGAAGAAAAAAATGGCGATGGCGAGAAGCATCTCTTACATCACCTCTACTCAGCTTCTCCCTCTTCATCGTCGTCCCAACATCGCCATCATCGATGTCAGGGATGAAGAGAGGAATTATGACGGGCATATAGCTGGATCGCTACACTATGCGAGTGGCTCGTTTGATGACAAGATCTCACATCTTGTTCAAAATGTCAAGGACAAAGACACACTTGTCTTCCATTGTGCCTTGAGCCAGGTTCGTGGCCCTACTTGTGCGAGAAGGCTCGTGAATTATCTTGATGAGAAGAAAGAAGATACTGGAATCAAAAACATCATGATCTTGGAACGCGGCTTTAACGGTTGGGAAGCTTCTGGAAAACCGGTCTGCCGCTGTGCAGAGGTTCCTTGCAAGGGCGATTGCGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008794 GO:0009507 GO:0009536 GO:0009987 GO:0016310 GO:0016311 GO:0016491 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0030611 GO:0030613 GO:0030614 GO:0035335 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046685 GO:0050896 GO:0055114 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

146

Amino Acids

16.45

Weight (kDa)

9.08

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhodanese	PF00581	31 - 128	1.2e-11	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03455 AT5G03455
fragaria_vesca	FvH4_6g16580
malus_domestica	MD12G1109000.v1.1
prunus_persica	Prupe.7G127500_v2.0.a1
pyrus_communis	pycom12g10920
rosa_chinensis	RchiOBHm_Chr3g0470511
rosa_laevigata	RLG00000024261
rosa_multiflora	Rmu_sc0003381.1_g000014
rosa_roxburghii	Rroxscaffold_6G00410750
rosa_rugosa	Rorug03G0109800
rosa_samantha	Rh3AG159900 Rh3BG184400 Rh3CG174900 Rh3DG190300
rosa_wichuraiana	Rw3G015130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
AccII	CGCG	1 cut(s)	363
AciI	CCGC	2 cut(s)	363, 403
AclWI	GGATC	1 cut(s)	175
AfiI	CCNNNNNNNGG	1 cut(s)	425
AgeI	ACCGGT	1 cut(s)	394
AgsI	TTSAA	1 cut(s)	221
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	3 cut(s)	85, 164, 383
AluI	AGCT	3 cut(s)	85, 164, 383
AlwI	GGATC	1 cut(s)	175
AoxI	GGCC	1 cut(s)	277
AsiGI	ACCGGT	1 cut(s)	394
AspLEI	GCGC	1 cut(s)	437
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	1 cut(s)	64
BauI	CACGAG	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	241
BccI	CCATC	2 cut(s)	43, 125
BciT130I	CCWGG	1 cut(s)	269
BglII	AGATCT	1 cut(s)	204
BisI	GCNGC	2 cut(s)	364, 403
BlsI	GCNGC	2 cut(s)	365, 404
Bme1390I	CCNGG	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	417
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	241
BpuEI	CTTGAG	1 cut(s)	283
Bsa29I	ATCGAT	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse118I	RCCGGY	1 cut(s)	394
Bse1I	ACTGG	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	269
BseCI	ATCGAT	1 cut(s)	123
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	337
BsgI	GTGCAG	1 cut(s)	429
Bsh1236I	CGCG	1 cut(s)	363
BshFI	GGCC	1 cut(s)	279
BshTI	ACCGGT	1 cut(s)	394
BshVI	ATCGAT	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	395
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	425
BsmFI	GGGAC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	279
Bsp143I	GATC	3 cut(s)	167, 204, 351
BspACI	CCGC	2 cut(s)	363, 403
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	1 cut(s)	94
BspDI	ATCGAT	1 cut(s)	123
BspFNI	CGCG	1 cut(s)	363
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	417
BspPI	GGATC	1 cut(s)	175
BsrFI	RCCGGY	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	337
BssAI	RCCGGY	1 cut(s)	394
BssMI	GATC	3 cut(s)	167, 204, 351
BssSI	CACGAG	1 cut(s)	299
Bst2BI	CACGAG	1 cut(s)	299
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	374
Bst6I	CTCTTC	2 cut(s)	99, 132
BstDEI	CTNAG	2 cut(s)	30, 81
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	363
BstHHI	GCGC	1 cut(s)	437
BstKTI	GATC	3 cut(s)	170, 207, 354
BstMBI	GATC	3 cut(s)	167, 204, 351
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	267
BstUI	CGCG	1 cut(s)	363
BstV2I	GAAGAC	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	204
BstXI	CCANNNNNNTGG	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	204
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	279
BsuTUI	ATCGAT	1 cut(s)	123
BtgZI	GCGATG	2 cut(s)	62, 97
BtsCI	GGATG	1 cut(s)	139
CciI	TCATGA	1 cut(s)	348
CfoI	GCGC	1 cut(s)	437
Cfr10I	RCCGGY	1 cut(s)	394
Cfr13I	GGNCC	1 cut(s)	278
ClaI	ATCGAT	1 cut(s)	123
CspAI	ACCGGT	1 cut(s)	394
CviAII	CATG	1 cut(s)	349
CviJI	RGCY	8 cut(s)	85, 164, 189, 267, 279, 298, 366, 383
CviKI_1	RGCY	8 cut(s)	85, 164, 189, 267, 279, 298, 366, 383
DdeI	CTNAG	2 cut(s)	30, 81
DpnI	GATC	3 cut(s)	169, 206, 353
DpnII	GATC	3 cut(s)	167, 204, 351
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
Eam1104I	CTCTTC	2 cut(s)	99, 132
EarI	CTCTTC	2 cut(s)	99, 132
EcoRII	CCWGG	1 cut(s)	267
FaeI	CATG	1 cut(s)	352
FaiI	YATR	6 cut(s)	14, 150, 159, 161, 180, 350
FalI	AAGNNNNNCTT	4 cut(s)	49, 81, 228, 260
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	1 cut(s)	348
Fnu4HI	GCNGC	2 cut(s)	364, 403
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	2 cut(s)	364, 403
GlaI	GCGC	1 cut(s)	436
GluI	GCNGC	2 cut(s)	364, 403
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	1 cut(s)	395
HhaI	GCGC	1 cut(s)	437
Hin1II	CATG	1 cut(s)	352
Hin6I	GCGC	1 cut(s)	435
HinP1I	GCGC	1 cut(s)	435
HindIII	AAGCTT	1 cut(s)	381
HinfI	GANTC	1 cut(s)	336
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	1 cut(s)	64
Hpy188III	TCNNGA	4 cut(s)	301, 311, 349, 387
Hpy99I	CGWCG	1 cut(s)	105
HpyAV	CCTTC	1 cut(s)	288
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4V	TGCA	2 cut(s)	410, 423
HpyF3I	CTNAG	2 cut(s)	30, 81
Hsp92II	CATG	1 cut(s)	352
HspAI	GCGC	1 cut(s)	435
Kzo9I	GATC	3 cut(s)	167, 204, 351
LpnPI	CCDG	7 cut(s)	115, 150, 254, 281, 318, 372, 408
LweI	GCATC	1 cut(s)	69
MalI	GATC	3 cut(s)	169, 206, 353
MboI	GATC	3 cut(s)	167, 204, 351
MboII	GAAGA	6 cut(s)	46, 86, 149, 241, 331, 338
MflI	RGATCY	1 cut(s)	204
MluCI	AATT	2 cut(s)	145, 304
MnlI	CCTC	4 cut(s)	85, 102, 135, 406
MseI	TTAA	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	405
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	1 cut(s)	363
NdeII	GATC	3 cut(s)	167, 204, 351
NlaIII	CATG	1 cut(s)	352
NlaIV	GGNNCC	1 cut(s)	417
PagI	TCATGA	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	336
PinAI	ACCGGT	1 cut(s)	394
PkrI	GCNGC	2 cut(s)	365, 404
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	417
PspPI	GGNCC	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	2 cut(s)	364, 403
Sau3AI	GATC	3 cut(s)	167, 204, 351
Sau96I	GGNCC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	269
SetI	ASST	6 cut(s)	77, 87, 166, 273, 385, 417
SfaNI	GCATC	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	262
SmoI	CTYRAG	1 cut(s)	262
Sse9I	AATT	2 cut(s)	145, 304
SsiI	CCGC	2 cut(s)	363, 403
StyD4I	CCNGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	374
TaqI	TCGA	1 cut(s)	123
TasI	AATT	2 cut(s)	145, 304
TauI	GCSGC	2 cut(s)	366, 405
TfiI	GAWTC	1 cut(s)	336
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TspDTI	ATGAA	2 cut(s)	86, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.