Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0015511

Physical Location & Seq

Genomic Coordinates Forward (+)

15314599 .. 15316241

Gene Structure 1643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG174900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTGGGAGGTCCGTAGCCCAAAGGGAGCATCCCATTCCCACTCCTGGTTGTGCTTTCACAGAAACAAGAAGAAGAAGAAGAAAACGAAGGAATCATCACCAGATATGGCTCGGAGCATCTCCTACATAACAGGGTCTCAGCTCCTCTCTCTCAGGCGCCGCCCCAACAATATCGCCATCATCGATGTCAGGGATGATGAAAGGAGCTACGATGGGCACATAGCAGGGTCTTTGCACTACCCCAATGACAGTTTCTATGACAAGATCTCCAATCTCGCTCAAGAAGTCAAAGCCAAAGACACCCTCGTTTTCCACTGCGCTCTCAGCCAGGTCCGAGGCCCGTCCTGTGCGCGAAAGTTTGCCAATTATCTTGAGGAGATGAAGGAAGATACAGGAATTAAAGACATTTTGGTTTTGGAGCGTGGCTTCAATGGCTGGGAATCTTCTGGTAGACCTGTTTGTCGCTGCAACAGCATTCCCTGTAAGGGTGAGATTCAGACTGAGACTGAGACTGAGAAGAAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008794 GO:0009507 GO:0009536 GO:0009987 GO:0016310 GO:0016311 GO:0016491 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0030611 GO:0030613 GO:0030614 GO:0035335 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046685 GO:0050896 GO:0055114 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

175

Amino Acids

19.93

Weight (kDa)

9.12

Isoelectric Point (pI)

60.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhodanese	PF00581	50 - 148	9.3e-12	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03455 AT5G03455
fragaria_vesca	FvH4_6g16580
malus_domestica	MD12G1109000.v1.1
prunus_persica	Prupe.7G127500_v2.0.a1
pyrus_communis	pycom12g10920
rosa_chinensis	RchiOBHm_Chr3g0470511
rosa_laevigata	RLG00000024261
rosa_multiflora	Rmu_sc0003381.1_g000014
rosa_roxburghii	Rroxscaffold_6G00410750
rosa_rugosa	Rorug03G0109800
rosa_samantha	Rh3AG159900 Rh3BG184400 Rh3CG174900 Rh3DG190300
rosa_wichuraiana	Rw3G015130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	459
AccB1I	GGYRCC	1 cut(s)	156
AccI	GTMKAC	1 cut(s)	451
AccII	CGCG	1 cut(s)	352
AciI	CCGC	1 cut(s)	160
AcyI	GRCGYC	1 cut(s)	157
AfiI	CCNNNNNNNGG	2 cut(s)	45, 485
AgsI	TTSAA	1 cut(s)	430
AjnI	CCWGG	2 cut(s)	44, 327
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AluBI	AGCT	2 cut(s)	142, 207
AluI	AGCT	2 cut(s)	142, 207
Alw26I	GTCTC	3 cut(s)	141, 497, 503
AoxI	GGCC	1 cut(s)	337
ApeKI	GCWGC	1 cut(s)	465
AspLEI	GCGC	3 cut(s)	159, 320, 352
AspS9I	GGNCC	3 cut(s)	10, 331, 338
AsuHPI	GGTGA	2 cut(s)	90, 500
AvaII	GGWCC	2 cut(s)	10, 331
BaeGI	GKGCMC	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	452
BccI	CCATC	2 cut(s)	185, 206
BciT130I	CCWGG	2 cut(s)	46, 329
BcoDI	GTCTC	3 cut(s)	141, 497, 503
BfoI	RGCGCY	1 cut(s)	160
BglII	AGATCT	1 cut(s)	264
BisI	GCNGC	2 cut(s)	160, 466
BlsI	GCNGC	2 cut(s)	161, 467
Bme1390I	CCNGG	2 cut(s)	46, 329
Bme18I	GGWCC	2 cut(s)	10, 331
BmgT120I	GGNCC	3 cut(s)	10, 331, 338
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	2 cut(s)	46, 329
BmsI	GCATC	2 cut(s)	38, 126
BpuEI	CTTGAG	2 cut(s)	264, 392
Bsa29I	ATCGAT	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	157
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	334
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 485
BseBI	CCWGG	2 cut(s)	46, 329
BseCI	ATCGAT	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	2 cut(s)	29, 199
BseLI	CCNNNNNNNGG	2 cut(s)	45, 485
BseMII	CTCAG	6 cut(s)	152, 166, 337, 492, 498, 504
BseRI	GAGGAG	2 cut(s)	134, 389
BseSI	GKGCMC	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	452
BseYI	CCCAGC	1 cut(s)	435
Bsh1236I	CGCG	1 cut(s)	352
BshFI	GGCC	1 cut(s)	339
BshNI	GGYRCC	1 cut(s)	156
BshVI	ATCGAT	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	45, 485
BsmAI	GTCTC	3 cut(s)	141, 497, 503
BsmI	GAATGC	1 cut(s)	474
BsnI	GGCC	1 cut(s)	339
Bso31I	GGTCTC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	264
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	6 cut(s)	151, 165, 336, 493, 499, 505
BspDI	ATCGAT	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	158
BspT107I	GGYRCC	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	1 cut(s)	264
BssNI	GRCGYC	1 cut(s)	157
Bst2UI	CCWGG	2 cut(s)	46, 329
Bst4CI	ACNGT	1 cut(s)	251
BstACI	GRCGYC	1 cut(s)	157
BstDEI	CTNAG	6 cut(s)	138, 152, 323, 501, 507, 513
BstF5I	GGATG	2 cut(s)	29, 199
BstFNI	CGCG	1 cut(s)	352
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	3 cut(s)	159, 320, 352
BstKTI	GATC	1 cut(s)	267
BstMAI	GTCTC	3 cut(s)	141, 497, 503
BstMBI	GATC	1 cut(s)	264
BstMWI	GCNNNNNNNGC	3 cut(s)	324, 432, 471
BstNI	CCWGG	2 cut(s)	46, 329
BstSCI	CCNGG	2 cut(s)	44, 327
BstSLI	GKGCMC	1 cut(s)	219
BstUI	CGCG	1 cut(s)	352
BstV1I	GCAGC	1 cut(s)	452
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
Bsu15I	ATCGAT	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	339
BsuTUI	ATCGAT	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	29, 199
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	1 cut(s)	313
CfoI	GCGC	3 cut(s)	159, 320, 352
Cfr13I	GGNCC	3 cut(s)	10, 331, 338
ClaI	ATCGAT	1 cut(s)	183
CviJI	RGCY	9 cut(s)	18, 110, 142, 207, 293, 327, 339, 426, 435
CviKI_1	RGCY	9 cut(s)	18, 110, 142, 207, 293, 327, 339, 426, 435
DdeI	CTNAG	6 cut(s)	138, 152, 323, 501, 507, 513
DinI	GGCGCC	1 cut(s)	158
DpnI	GATC	1 cut(s)	266
DpnII	GATC	1 cut(s)	264
DrdI	GACNNNNNNGTC	1 cut(s)	459
DseDI	GACNNNNNNGTC	1 cut(s)	459
Eco31I	GGTCTC	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	10, 331
EcoRII	CCWGG	2 cut(s)	44, 327
EgeI	GGCGCC	1 cut(s)	158
EheI	GGCGCC	1 cut(s)	158
FaiI	YATR	5 cut(s)	107, 128, 221, 258, 526
FblI	GTMKAC	1 cut(s)	451
Fnu4HI	GCNGC	2 cut(s)	160, 466
FokI	GGATG	2 cut(s)	16, 206
Fsp4HI	GCNGC	2 cut(s)	160, 466
GlaI	GCGC	3 cut(s)	158, 319, 351
GluI	GCNGC	2 cut(s)	160, 466
GsaI	CCCAGC	1 cut(s)	439
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	1 cut(s)	339
HhaI	GCGC	3 cut(s)	159, 320, 352
Hin1I	GRCGYC	1 cut(s)	157
Hin6I	GCGC	3 cut(s)	157, 318, 350
HinP1I	GCGC	3 cut(s)	157, 318, 350
HinfI	GANTC	3 cut(s)	92, 440, 493
HphI	GGTGA	2 cut(s)	90, 500
Hpy166II	GTNNAC	1 cut(s)	452
Hpy188I	TCNGA	3 cut(s)	114, 335, 498
Hpy188III	TCNNGA	2 cut(s)	281, 371
Hpy8I	GTNNAC	1 cut(s)	452
HpyAV	CCTTC	2 cut(s)	82, 376
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4V	TGCA	2 cut(s)	235, 468
HpyF10VI	GCNNNNNNNGC	3 cut(s)	324, 432, 471
HpyF3I	CTNAG	6 cut(s)	138, 152, 323, 501, 507, 513
Hsp92I	GRCGYC	1 cut(s)	157
HspAI	GCGC	3 cut(s)	157, 318, 350
KasI	GGCGCC	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	264
LmnI	GCTCC	5 cut(s)	26, 114, 147, 204, 418
Lsp1109I	GCAGC	1 cut(s)	452
LweI	GCATC	2 cut(s)	38, 126
MalI	GATC	1 cut(s)	266
MboI	GATC	1 cut(s)	264
MboII	GAAGA	6 cut(s)	82, 85, 88, 91, 398, 435
MflI	RGATCY	1 cut(s)	264
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	2 cut(s)	364, 396
Mly113I	GGCGCC	1 cut(s)	157
MnlI	CCTC	4 cut(s)	155, 314, 329, 367
MseI	TTAA	1 cut(s)	399
MspR9I	CCNGG	2 cut(s)	46, 329
Mva1269I	GAATGC	1 cut(s)	474
MvaI	CCWGG	2 cut(s)	46, 329
MvnI	CGCG	1 cut(s)	352
MwoI	GCNNNNNNNGC	3 cut(s)	324, 432, 471
NarI	GGCGCC	1 cut(s)	157
NdeII	GATC	1 cut(s)	264
NlaIV	GGNNCC	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PctI	GAATGC	1 cut(s)	474
PfeI	GAWTC	3 cut(s)	92, 440, 493
PkrI	GCNGC	2 cut(s)	161, 467
PluTI	GGCGCC	1 cut(s)	160
Psp6I	CCWGG	2 cut(s)	44, 327
PspFI	CCCAGC	1 cut(s)	435
PspGI	CCWGG	2 cut(s)	44, 327
PspN4I	GGNNCC	1 cut(s)	158
PspPI	GGNCC	3 cut(s)	10, 331, 338
PsuI	RGATCY	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	2 cut(s)	160, 466
Sau3AI	GATC	1 cut(s)	264
Sau96I	GGNCC	3 cut(s)	10, 331, 338
ScrFI	CCNGG	2 cut(s)	46, 329
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	5 cut(s)	12, 144, 209, 333, 457
SfaNI	GCATC	2 cut(s)	38, 126
SfoI	GGCGCC	1 cut(s)	158
SinI	GGWCC	2 cut(s)	10, 331
SmlI	CTYRAG	2 cut(s)	279, 371
SmoI	CTYRAG	2 cut(s)	279, 371
Sse9I	AATT	2 cut(s)	364, 396
SsiI	CCGC	1 cut(s)	160
SspDI	GGCGCC	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	44, 327
TaaI	ACNGT	1 cut(s)	251
TaqI	TCGA	1 cut(s)	183
TasI	AATT	2 cut(s)	364, 396
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	3 cut(s)	92, 440, 493
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	1 cut(s)	320
TseI	GCWGC	1 cut(s)	465
TspDTI	ATGAA	2 cut(s)	213, 395
TspRI	CASTG	1 cut(s)	320
VpaK11BI	GGWCC	2 cut(s)	10, 331
XmiI	GTMKAC	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.