Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015511

Physical Location & Seq

Genomic Coordinates Forward (+)

10508085 .. 10509798

Gene Structure 1714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g16580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTTGGAGGTGCGTAGCCCCAAGGGAGCATCCGATTCCAACTCCTGGTTGTGCTTTGGCAGAAACAAGAAGAAGACGAAGACGAAGCAACCATCAGATATGGCTCGTAGCATCTCCTGCATAACAGGGTCTCAGCTCCTCTCTCTCAAACGCCGACCCAACAATATCGCCATCATCGATGTCAGGGATGACGAGAGGAGCTACGATGGGCACATAGCGGGGTCTTTGCACTATGCCAATGACACTTTCTATGATAAGATCTCCAGTCTCGCTCAGGAAGTCAAAGGGAAAGACACCCTTGTGTTTCACTGCGCTCTCAGCCAGGTTCGAGGCCCGTCCTGTGCACGGAAGTTTGCTAATTATCTTGAGGAGATGAAGGAAGAGACGGGGATCAAAGACATTTTGGTTTTGGAGCGTGGCTTCAATGGCTGGGAATCTTCTGGTAGACCTGTTTGTCGCTGCAACAGCATTCCCTGCAAGGGTGAGACTGAGACCAAGAGTGAGAGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008794 GO:0009507 GO:0009536 GO:0009987 GO:0016310 GO:0016311 GO:0016491 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0030611 GO:0030613 GO:0030614 GO:0035335 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046685 GO:0050896 GO:0055114 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

171

Amino Acids

18.94

Weight (kDa)

8.83

Isoelectric Point (pI)

61.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhodanese	PF00581	49 - 146	2.6e-11	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03455 AT5G03455
fragaria_vesca	FvH4_6g16580
malus_domestica	MD12G1109000.v1.1
prunus_persica	Prupe.7G127500_v2.0.a1
pyrus_communis	pycom12g10920
rosa_chinensis	RchiOBHm_Chr3g0470511
rosa_laevigata	RLG00000024261
rosa_multiflora	Rmu_sc0003381.1_g000014
rosa_roxburghii	Rroxscaffold_6G00410750
rosa_rugosa	Rorug03G0109800
rosa_samantha	Rh3AG159900 Rh3BG184400 Rh3CG174900 Rh3DG190300
rosa_wichuraiana	Rw3G015130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	453
AccB7I	CCANNNNNTGG	1 cut(s)	45
AccI	GTMKAC	1 cut(s)	445
AciI	CCGC	1 cut(s)	218
AclWI	GGATC	1 cut(s)	398
AfiI	CCNNNNNNNGG	3 cut(s)	45, 345, 479
AgsI	TTSAA	1 cut(s)	424
AjnI	CCWGG	2 cut(s)	44, 321
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AleI	CACNNNNGTG	1 cut(s)	299
AluBI	AGCT	2 cut(s)	136, 201
AluI	AGCT	2 cut(s)	136, 201
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	5 cut(s)	135, 272, 377, 479, 485
Alw44I	GTGCAC	1 cut(s)	342
AlwI	GGATC	1 cut(s)	398
AoxI	GGCC	1 cut(s)	331
ApaLI	GTGCAC	1 cut(s)	342
ApeKI	GCWGC	1 cut(s)	459
AspLEI	GCGC	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	494
BaeGI	GKGCMC	2 cut(s)	213, 346
BbsI	GAAGAC	2 cut(s)	80, 86
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	1 cut(s)	446
BccI	CCATC	3 cut(s)	100, 179, 200
BciT130I	CCWGG	2 cut(s)	46, 323
BcoDI	GTCTC	5 cut(s)	135, 272, 377, 479, 485
BglII	AGATCT	1 cut(s)	258
BisI	GCNGC	1 cut(s)	460
BlsI	GCNGC	1 cut(s)	461
Bme1390I	CCNGG	2 cut(s)	46, 323
BmgT120I	GGNCC	1 cut(s)	332
BmrFI	CCNGG	2 cut(s)	46, 323
BmsI	GCATC	2 cut(s)	38, 120
BpiI	GAAGAC	2 cut(s)	80, 86
BpmI	CTGGAG	1 cut(s)	247
Bpu10I	CCTNAGC	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	386
Bsa29I	ATCGAT	1 cut(s)	177
BsaI	GGTCTC	2 cut(s)	135, 485
BsaJI	CCNNGG	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 345, 479
Bse1I	ACTGG	1 cut(s)	264
BseBI	CCWGG	2 cut(s)	46, 323
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	2 cut(s)	29, 193
BseLI	CCNNNNNNNGG	3 cut(s)	45, 345, 479
BseMII	CTCAG	4 cut(s)	146, 287, 331, 480
BseNI	ACTGG	1 cut(s)	264
BseRI	GAGGAG	3 cut(s)	128, 211, 383
BseSI	GKGCMC	2 cut(s)	213, 346
BseXI	GCAGC	1 cut(s)	446
BseYI	CCCAGC	1 cut(s)	429
BshFI	GGCC	1 cut(s)	333
BshVI	ATCGAT	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	346
BslI	CCNNNNNNNGG	3 cut(s)	45, 345, 479
BsmAI	GTCTC	5 cut(s)	135, 272, 377, 479, 485
BsmBI	CGTCTC	1 cut(s)	377
BsmI	GAATGC	1 cut(s)	468
BsnI	GGCC	1 cut(s)	333
Bso31I	GGTCTC	2 cut(s)	135, 485
Bsp1286I	GDGCHC	2 cut(s)	213, 346
Bsp143I	GATC	2 cut(s)	258, 390
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	4 cut(s)	145, 286, 330, 481
BspDI	ATCGAT	1 cut(s)	177
BspPI	GGATC	1 cut(s)	398
BspTNI	GGTCTC	2 cut(s)	135, 485
BsrI	ACTGG	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	2 cut(s)	258, 390
BssT1I	CCWWGG	1 cut(s)	21
Bst2UI	CCWGG	2 cut(s)	46, 323
Bst6I	CTCTTC	1 cut(s)	375
BstAPI	GCANNNNNTGC	2 cut(s)	117, 474
BstDEI	CTNAG	4 cut(s)	132, 273, 317, 489
BstF5I	GGATG	2 cut(s)	29, 193
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	2 cut(s)	261, 393
BstMAI	GTCTC	5 cut(s)	135, 272, 377, 479, 485
BstMBI	GATC	2 cut(s)	258, 390
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 318, 426, 465, 474
BstNI	CCWGG	2 cut(s)	46, 323
BstSCI	CCNGG	2 cut(s)	44, 321
BstSLI	GKGCMC	2 cut(s)	213, 346
BstV1I	GCAGC	1 cut(s)	446
BstV2I	GAAGAC	2 cut(s)	80, 86
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
Bsu15I	ATCGAT	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	333
BsuTUI	ATCGAT	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	29, 193
BtsI	GCAGTG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	307
CfoI	GCGC	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	332
ClaI	ATCGAT	1 cut(s)	177
CviJI	RGCY	8 cut(s)	18, 104, 136, 201, 321, 333, 420, 429
CviKI_1	RGCY	8 cut(s)	18, 104, 136, 201, 321, 333, 420, 429
DdeI	CTNAG	4 cut(s)	132, 273, 317, 489
DpnI	GATC	2 cut(s)	260, 392
DpnII	GATC	2 cut(s)	258, 390
DrdI	GACNNNNNNGTC	1 cut(s)	453
DseDI	GACNNNNNNGTC	1 cut(s)	453
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	21
Eco31I	GGTCTC	2 cut(s)	135, 485
EcoRII	CCWGG	2 cut(s)	44, 321
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	377
FaiI	YATR	6 cut(s)	101, 122, 215, 234, 252, 511
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FauI	CCCGC	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	445
Fnu4HI	GCNGC	1 cut(s)	460
FokI	GGATG	2 cut(s)	16, 200
Fsp4HI	GCNGC	1 cut(s)	460
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	1 cut(s)	460
GsaI	CCCAGC	1 cut(s)	433
GsuI	CTGGAG	1 cut(s)	247
HaeIII	GGCC	1 cut(s)	333
HhaI	GCGC	1 cut(s)	314
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HinfI	GANTC	2 cut(s)	35, 434
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	2 cut(s)	344, 446
Hpy188I	TCNGA	2 cut(s)	34, 97
Hpy188III	TCNNGA	2 cut(s)	275, 365
Hpy8I	GTNNAC	2 cut(s)	344, 446
HpyAV	CCTTC	1 cut(s)	370
HpyCH4V	TGCA	6 cut(s)	120, 229, 344, 462, 477, 509
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 318, 426, 465, 474
HpyF3I	CTNAG	4 cut(s)	132, 273, 317, 489
HspAI	GCGC	1 cut(s)	312
Kzo9I	GATC	2 cut(s)	258, 390
LmnI	GCTCC	4 cut(s)	26, 141, 198, 412
Lsp1109I	GCAGC	1 cut(s)	446
LweI	GCATC	2 cut(s)	38, 120
MalI	GATC	2 cut(s)	260, 392
MboI	GATC	2 cut(s)	258, 390
MboII	GAAGA	5 cut(s)	82, 85, 91, 392, 429
MflI	RGATCY	1 cut(s)	258
MhlI	GDGCHC	2 cut(s)	213, 346
MluCI	AATT	1 cut(s)	358
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	4 cut(s)	149, 189, 323, 361
MslI	CAYNNNNRTG	1 cut(s)	299
MspR9I	CCNGG	2 cut(s)	46, 323
Mva1269I	GAATGC	1 cut(s)	468
MvaI	CCWGG	2 cut(s)	46, 323
MwoI	GCNNNNNNNGC	5 cut(s)	117, 318, 426, 465, 474
NdeII	GATC	2 cut(s)	258, 390
OliI	CACNNNNGTG	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PctI	GAATGC	1 cut(s)	468
PfeI	GAWTC	2 cut(s)	35, 434
PflMI	CCANNNNNTGG	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	461
Psp6I	CCWGG	2 cut(s)	44, 321
PspFI	CCCAGC	1 cut(s)	429
PspGI	CCWGG	2 cut(s)	44, 321
PspPI	GGNCC	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	258
RseI	CAYNNNNRTG	1 cut(s)	299
SatI	GCNGC	1 cut(s)	460
Sau3AI	GATC	2 cut(s)	258, 390
Sau96I	GGNCC	1 cut(s)	332
ScrFI	CCNGG	2 cut(s)	46, 323
SduI	GDGCHC	2 cut(s)	213, 346
SetI	ASST	5 cut(s)	12, 138, 203, 327, 451
SfaNI	GCATC	2 cut(s)	38, 120
SmiMI	CAYNNNNRTG	1 cut(s)	299
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	1 cut(s)	358
SsiI	CCGC	1 cut(s)	218
StyD4I	CCNGG	2 cut(s)	44, 321
StyI	CCWWGG	1 cut(s)	21
TaqI	TCGA	2 cut(s)	177, 328
TasI	AATT	1 cut(s)	358
TfiI	GAWTC	2 cut(s)	35, 434
TscAI	CASTG	1 cut(s)	314
TseI	GCWGC	1 cut(s)	459
TspDTI	ATGAA	1 cut(s)	389
TspGWI	ACGGA	1 cut(s)	361
TspRI	CASTG	1 cut(s)	314
Van91I	CCANNNNNTGG	1 cut(s)	45
VneI	GTGCAC	1 cut(s)	342
XmiI	GTMKAC	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.