Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0015511

Physical Location & Seq

Genomic Coordinates Reverse (-)

13036282 .. 13037987

Gene Structure 1706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g10920.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCAAAAGAGGATTTTTGTAGCCCATAAGAAAAAAAAAATATCAATTCTTCAACTTGTTCTTCATCTTCCATTTTTGGCTGTGATTCCTGCAGCAACCAATAGAATCGACATGGCTAAGAGCATCTCCTACATTACAGGTTCTCAGCTTCTCTCCCTCAAACCCCGCCCCAACATCGCCATCATCGACGTCAGGGACGACGAGCGGAGCTGCGACGGGCACATAGCAGGATCTTTGCATTACCCGAGTGGGAATTTCTACGACAAGATCTCCAATCTCGCTCAAGATGTCAAGGGCAAAGACACCCTCGTTTTCCACTGCGCTCTTAGCCAGGTTCGGGGTCCATCCTGTGCACGAAAGTTTGCCAATTACCTTGAAGAGGTGAAGGAAGAGACTGGAATCAAAGACATTTTGATTTTGGAGCGTGGCTTCAATGGCTGGCAAAGTTCGGGTAGACCTGTTTGCCACTGCAACAGCATTCCCTGTCAAGGCGAGAGCGGGAGTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008794 GO:0009507 GO:0009536 GO:0009987 GO:0016310 GO:0016311 GO:0016491 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0030611 GO:0030613 GO:0030614 GO:0035335 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046685 GO:0050896 GO:0055114 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

170

Amino Acids

18.66

Weight (kDa)

9.07

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03455 AT5G03455
fragaria_vesca	FvH4_6g16580
malus_domestica	MD12G1109000.v1.1
prunus_persica	Prupe.7G127500_v2.0.a1
pyrus_communis	pycom12g10920
rosa_chinensis	RchiOBHm_Chr3g0470511
rosa_laevigata	RLG00000024261
rosa_multiflora	Rmu_sc0003381.1_g000014
rosa_roxburghii	Rroxscaffold_6G00410750
rosa_rugosa	Rorug03G0109800
rosa_samantha	Rh3AG159900 Rh3BG184400 Rh3CG174900 Rh3DG190300
rosa_wichuraiana	Rw3G015130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	192
AccBSI	CCGCTC	2 cut(s)	205, 498
AccI	GTMKAC	1 cut(s)	454
AciI	CCGC	3 cut(s)	166, 205, 498
AclWI	GGATC	1 cut(s)	238
AcsI	RAATTY	1 cut(s)	253
AcyI	GRCGYC	1 cut(s)	189
AfiI	CCNNNNNNNGG	3 cut(s)	337, 379, 488
AgsI	TTSAA	3 cut(s)	53, 377, 433
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	2 cut(s)	148, 210
AluI	AGCT	2 cut(s)	148, 210
Alw21I	GWGCWC	1 cut(s)	355
Alw26I	GTCTC	1 cut(s)	386
Alw44I	GTGCAC	1 cut(s)	351
AlwI	GGATC	1 cut(s)	238
Ama87I	CYCGRG	1 cut(s)	244
ApaLI	GTGCAC	1 cut(s)	351
ApeKI	GCWGC	2 cut(s)	92, 210
ApoI	RAATTY	1 cut(s)	253
AspLEI	GCGC	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	394
AvaI	CYCGRG	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	341
BaeGI	GKGCMC	2 cut(s)	222, 355
Bbv12I	GWGCWC	1 cut(s)	355
BbvI	GCAGC	2 cut(s)	104, 197
BccI	CCATC	2 cut(s)	188, 352
BciT130I	CCWGG	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	386
BfmI	CTRYAG	1 cut(s)	90
BglII	AGATCT	1 cut(s)	267
BisI	GCNGC	2 cut(s)	93, 211
BlsI	GCNGC	2 cut(s)	94, 212
Bme1390I	CCNGG	1 cut(s)	332
Bme18I	GGWCC	1 cut(s)	341
BmeT110I	CYCGRG	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	341
BmiI	GGNNCC	1 cut(s)	342
BmrFI	CCNGG	1 cut(s)	332
BmsI	GCATC	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	3 cut(s)	337, 379, 488
Bse1I	ACTGG	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	332
BseGI	GGATG	1 cut(s)	344
BseLI	CCNNNNNNNGG	3 cut(s)	337, 379, 488
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	400
BseSI	GKGCMC	2 cut(s)	222, 355
BseXI	GCAGC	2 cut(s)	104, 197
BsiHKAI	GWGCWC	1 cut(s)	355
BsiHKCI	CYCGRG	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	3 cut(s)	337, 379, 488
BsmAI	GTCTC	1 cut(s)	386
BsmFI	GGGAC	1 cut(s)	209
BsmI	GAATGC	1 cut(s)	477
BsoBI	CYCGRG	1 cut(s)	244
Bsp1286I	GDGCHC	2 cut(s)	222, 355
Bsp143I	GATC	2 cut(s)	230, 267
BspACI	CCGC	3 cut(s)	166, 205, 498
BspCNI	CTCAG	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	342
BspMAI	CTGCAG	1 cut(s)	94
BspPI	GGATC	1 cut(s)	238
BsrBI	CCGCTC	2 cut(s)	205, 498
BsrI	ACTGG	1 cut(s)	400
BssMI	GATC	2 cut(s)	230, 267
BssNI	GRCGYC	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	332
Bst6I	CTCTTC	2 cut(s)	372, 384
BstACI	GRCGYC	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	440
BstDEI	CTNAG	3 cut(s)	117, 144, 326
BstENI	CCTNNNNNAGG	1 cut(s)	377
BstF5I	GGATG	1 cut(s)	344
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	2 cut(s)	233, 270
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	2 cut(s)	230, 267
BstMWI	GCNNNNNNNGC	2 cut(s)	327, 435
BstNI	CCWGG	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	330
BstSFI	CTRYAG	1 cut(s)	90
BstSLI	GKGCMC	2 cut(s)	222, 355
BstV1I	GCAGC	2 cut(s)	104, 197
BstX2I	RGATCY	2 cut(s)	230, 267
BstYI	RGATCY	2 cut(s)	230, 267
BtgZI	GCGATG	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	344
BtsI	GCAGTG	2 cut(s)	316, 466
BtsIMutI	CAGTG	2 cut(s)	316, 466
Cac8I	GCNNGC	1 cut(s)	440
CfoI	GCGC	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	341
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	8 cut(s)	23, 80, 116, 148, 210, 330, 429, 438
CviKI_1	RGCY	8 cut(s)	23, 80, 116, 148, 210, 330, 429, 438
DdeI	CTNAG	3 cut(s)	117, 144, 326
DpnI	GATC	2 cut(s)	232, 269
DpnII	GATC	2 cut(s)	230, 267
Eam1104I	CTCTTC	2 cut(s)	372, 384
EarI	CTCTTC	2 cut(s)	372, 384
Eco47I	GGWCC	1 cut(s)	341
Eco88I	CYCGRG	1 cut(s)	244
EcoNI	CCTNNNNNAGG	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	330
FaeI	CATG	1 cut(s)	115
FaiI	YATR	3 cut(s)	27, 113, 224
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	1 cut(s)	111
FauI	CCCGC	2 cut(s)	173, 491
FblI	GTMKAC	1 cut(s)	454
Fnu4HI	GCNGC	2 cut(s)	93, 211
FokI	GGATG	1 cut(s)	331
Fsp4HI	GCNGC	2 cut(s)	93, 211
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	2 cut(s)	93, 211
HhaI	GCGC	1 cut(s)	323
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	115
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HinfI	GANTC	3 cut(s)	85, 105, 399
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	2 cut(s)	353, 455
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	2 cut(s)	353, 455
Hpy99I	CGWCG	3 cut(s)	191, 203, 218
HpyAV	CCTTC	1 cut(s)	379
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	5 cut(s)	4, 92, 238, 353, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	327, 435
HpyF3I	CTNAG	3 cut(s)	117, 144, 326
HpySE526I	ACGT	1 cut(s)	189
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	115
HspAI	GCGC	1 cut(s)	321
Kzo9I	GATC	2 cut(s)	230, 267
LmnI	GCTCC	2 cut(s)	207, 421
Lsp1109I	GCAGC	2 cut(s)	104, 197
LweI	GCATC	1 cut(s)	132
MaeII	ACGT	1 cut(s)	189
MalI	GATC	2 cut(s)	232, 269
MbiI	CCGCTC	2 cut(s)	205, 498
MboI	GATC	2 cut(s)	230, 267
MboII	GAAGA	5 cut(s)	41, 53, 59, 389, 401
MflI	RGATCY	2 cut(s)	230, 267
MhlI	GDGCHC	2 cut(s)	222, 355
MluCI	AATT	3 cut(s)	45, 253, 367
MnlI	CCTC	4 cut(s)	3, 167, 317, 373
MspR9I	CCNGG	1 cut(s)	332
Mva1269I	GAATGC	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	2 cut(s)	327, 435
NdeII	GATC	2 cut(s)	230, 267
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	2 cut(s)	183, 195
PctI	GAATGC	1 cut(s)	477
PfeI	GAWTC	3 cut(s)	85, 105, 399
PkrI	GCNGC	2 cut(s)	94, 212
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	342
PspPI	GGNCC	1 cut(s)	341
PstI	CTGCAG	1 cut(s)	94
PsuI	RGATCY	2 cut(s)	230, 267
SatI	GCNGC	2 cut(s)	93, 211
Sau3AI	GATC	2 cut(s)	230, 267
Sau96I	GGNCC	1 cut(s)	341
ScrFI	CCNGG	1 cut(s)	332
SduI	GDGCHC	2 cut(s)	222, 355
SetI	ASST	8 cut(s)	142, 150, 192, 212, 336, 375, 384, 460
SfaNI	GCATC	1 cut(s)	132
SfcI	CTRYAG	1 cut(s)	90
SinI	GGWCC	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
Sse9I	AATT	3 cut(s)	45, 253, 367
SsiI	CCGC	3 cut(s)	166, 205, 498
StyD4I	CCNGG	1 cut(s)	330
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	2 cut(s)	108, 186
TasI	AATT	3 cut(s)	45, 253, 367
TfiI	GAWTC	3 cut(s)	85, 105, 399
TscAI	CASTG	2 cut(s)	323, 473
TseI	GCWGC	2 cut(s)	92, 210
TspDTI	ATGAA	1 cut(s)	53
TspRI	CASTG	2 cut(s)	323, 473
VneI	GTGCAC	1 cut(s)	351
VpaK11BI	GGWCC	1 cut(s)	341
XagI	CCTNNNNNAGG	1 cut(s)	377
XapI	RAATTY	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	454
ZraI	GACGTC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.