AT5G03720

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006133
Physical Location & Seq
Reverse (-)
971142 .. 974326
3185 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G03720.2

Sequence Viewer

Length: 1239 bp
ATGAGCCCAAAAAAAGATGCTGTTTCTAAACCAACTCCAATTTCAGTACCCGTTTCGAGACGATCCGATATACCCGGGTCTCTCTACGTCGACACTGACATGGGTTTCTCTGGGTCACCACTTCCCATGCCACTAGACATCTTACAAGGGAATCCAATTCCACCTTTTTTATCCAAGACTTTTGATTTGGTTGATGACCCGACTCTTGACCCGGTCATCTCTTGGGGACTGACCGGAGCTAGCTTCGTAGTTTGGGATCCTCTAGAGTTTGCCAGAATCATACTTCCAAGGAATTTCAAACACAACAATTTCTCCAGCTTCGTCAGACAGCTTAACACTTATGGATTTCGAAAGATTGATACTGACAAGTGGGAATTCGCTAACGAGGCTTTCCTTAGAGGCAAGAAGCATCTTCTGAAGAACATTCATCGTCGTCGATCACCACAATCCAACCAAACTTGCTGCAGTAGCACTAGCCAAAGCCAAGGGTCACCTACTGAGGTTGGAGGAGAGATTGAGAAGCTGAGGAAAGAGCGGCGTGCATTGATGGAGGAAATGGTTGAGCTTCAGCAGCAAAGCAGAGGCACAGCTCGACATGTGGACACTGTAAACCAGAGGCTGAAAGCTGCAGAGCAACGTCAGAAGCAATTGCTCTCTTTCTTGGCTAAGTTGTTTCAGAACCGGGGTTTCTTGGAACGCCTGAAGAACTTCAAAGGAAAAGAAAAAGGAGGAGCTCTTGGATTGGAAAAGGCGAGAAAGAAGTTCATCAAGCACCACCAGCAGCCTCAAGATTCTCCAACAGGAGGGGAGGTGGTGAAGTATGAAGCTGATGATTGGGAGAGATTGCTAATGTATGACGAAGAGACTGAGAACACCAAGGGTTTAGGAGGGATGACTTCAAGCGATCCAAAAGGCAAGAACTTGATGTATCCATCAGAAGAAGAGATGAGCAAACCAGATTACTTGATGTCCTTCCCATCTCCTGAAGGACTTATTAAACAAGAAGAGACGACATGGAGCATGGGTTTCGATACTACAATACCGAGTTTCAGCAACACCGATGCATGGGGAAACACAATGGACTATAATGATGTCTCAGAGTTTGGTTTTGCTGCAGAAACAACAAGTGATGGTTTGCCTGATGTCTGCTGGGAACAATTTGCTGCAGGAATCACAGAGACTGGATTCAACTGGCCAACTGGTGATGATGATGATAATACGCCAATGAATGATCCTTAG

Protein Analysis

412

Amino Acids

46.46

Weight (kDa)

5.32

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 56 - 145 8.8e-28 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 535
AccI GTMKAC 1 cut(s) 90
AciI CCGC 1 cut(s) 535
AclWI GGATC 5 cut(s) 57, 251, 264, 899, 1226
AcoI YGGCCR 1 cut(s) 1193
AcsI RAATTY 2 cut(s) 292, 374
AcuI CTGAAG 4 cut(s) 437, 551, 722, 1005
AfaI GTAC 1 cut(s) 48
AfiI CCNNNNNNNGG 2 cut(s) 803, 1065
AflIII ACRYGT 1 cut(s) 595
AgsI TTSAA 4 cut(s) 298, 712, 900, 1189
AjuI GAANNNNNNNTTGG 2 cut(s) 25, 57
Alw21I GWGCWC 1 cut(s) 736
Alw26I GTCTC 6 cut(s) 52, 84, 857, 1001, 1099, 1172
AlwI GGATC 5 cut(s) 57, 251, 264, 899, 1226
AlwNI CAGNNNCTG 2 cut(s) 619, 1181
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 1 cut(s) 1193
ApeKI GCWGC 6 cut(s) 462, 571, 626, 781, 1112, 1163
ApoI RAATTY 2 cut(s) 292, 374
ArsI GACNNNNNNTTYG 2 cut(s) 169, 201
Asp700I GAANNNNTTC 1 cut(s) 707
AsuC2I CCSGG 4 cut(s) 75, 76, 212, 683
AsuHPI GGTGA 5 cut(s) 108, 432, 483, 826, 1214
AsuII TTCGAA 1 cut(s) 349
AsuNHI GCTAGC 1 cut(s) 239
AvaI CYCGRG 1 cut(s) 74
BalI TGGCCA 1 cut(s) 1195
BamHI GGATCC 1 cut(s) 256
BanII GRGCYC 2 cut(s) 8, 736
Bbv12I GWGCWC 1 cut(s) 736
BbvCI CCTCAGC 1 cut(s) 524
BbvI GCAGC 6 cut(s) 449, 583, 613, 793, 1099, 1150
BccI CCATC 4 cut(s) 541, 940, 985, 1124
BcgI CGANNNNNNTGC 2 cut(s) 1009, 1043
BciVI GTATCC 1 cut(s) 939
BcnI CCSGG 4 cut(s) 75, 76, 212, 683
BcoDI GTCTC 6 cut(s) 52, 84, 857, 1001, 1099, 1172
BfaI CTAG 4 cut(s) 134, 240, 263, 474
BfmI CTRYAG 4 cut(s) 463, 627, 1113, 1164
BfuI GTATCC 1 cut(s) 939
BisI GCNGC 7 cut(s) 463, 536, 572, 627, 782, 1113, 1164
BlsI GCNGC 7 cut(s) 464, 537, 573, 628, 783, 1114, 1165
Bme1390I CCNGG 4 cut(s) 75, 76, 212, 683
BmeT110I CYCGRG 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 4 cut(s) 75, 76, 212, 683
BmsI GCATC 3 cut(s) 7, 418, 1051
BmtI GCTAGC 1 cut(s) 243
BpmI CTGGAG 1 cut(s) 298
Bpu10I CCTNAGC 1 cut(s) 524
Bpu14I TTCGAA 1 cut(s) 349
BpuEI CTTGAG 1 cut(s) 771
BpuMI CCSGG 4 cut(s) 75, 76, 212, 683
BsaI GGTCTC 1 cut(s) 84
BsaJI CCNNGG 5 cut(s) 74, 287, 484, 682, 876
BsaWI WCCGGW 1 cut(s) 233
BsaXI ACNNNNNCTCC 6 cut(s) 296, 326, 795, 825, 1009, 1039
Bsc4I CCNNNNNNNGG 2 cut(s) 803, 1065
Bse1I ACTGG 3 cut(s) 1186, 1196, 1204
BseDI CCNNGG 5 cut(s) 74, 287, 484, 682, 876
BseGI GGATG 1 cut(s) 897
BseLI CCNNNNNNNGG 2 cut(s) 803, 1065
BseMII CTCAG 4 cut(s) 489, 515, 858, 1110
BseNI ACTGG 3 cut(s) 1186, 1196, 1204
BseRI GAGGAG 2 cut(s) 522, 744
BseXI GCAGC 6 cut(s) 449, 583, 613, 793, 1099, 1150
BseYI CCCAGC 1 cut(s) 1149
BshFI GGCC 1 cut(s) 1195
BsiHKAI GWGCWC 1 cut(s) 736
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 4 cut(s) 75, 212, 234, 682
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 2 cut(s) 803, 1065
BsmAI GTCTC 6 cut(s) 52, 84, 857, 1001, 1099, 1172
BsmBI CGTCTC 2 cut(s) 52, 1001
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 1 cut(s) 1195
Bso31I GGTCTC 1 cut(s) 84
BsoBI CYCGRG 1 cut(s) 74
Bsp119I TTCGAA 1 cut(s) 349
Bsp1286I GDGCHC 2 cut(s) 8, 736
Bsp143I GATC 5 cut(s) 62, 256, 437, 904, 1231
BspACI CCGC 1 cut(s) 535
BspANI GGCC 1 cut(s) 1195
BspCNI CTCAG 4 cut(s) 490, 516, 859, 1109
BspLI GGNNCC 1 cut(s) 258
BspMAI CTGCAG 4 cut(s) 467, 631, 1117, 1168
BspOI GCTAGC 1 cut(s) 243
BspPI GGATC 5 cut(s) 57, 251, 264, 899, 1226
BspT104I TTCGAA 1 cut(s) 349
BspTNI GGTCTC 1 cut(s) 84
BsrBI CCGCTC 1 cut(s) 535
BsrI ACTGG 3 cut(s) 1186, 1196, 1204
BssECI CCNNGG 5 cut(s) 74, 287, 484, 682, 876
BssMI GATC 5 cut(s) 62, 256, 437, 904, 1231
BssT1I CCWWGG 3 cut(s) 287, 484, 876
Bst4CI ACNGT 1 cut(s) 607
Bst6I CTCTTC 3 cut(s) 855, 936, 999
BstBI TTCGAA 1 cut(s) 349
BstC8I GCNNGC 2 cut(s) 241, 540
BstDEI CTNAG 7 cut(s) 395, 498, 524, 666, 867, 1096, 1236
BstEII GGTNACC 2 cut(s) 114, 489
BstF5I GGATG 1 cut(s) 897
BstKTI GATC 5 cut(s) 65, 259, 440, 907, 1234
BstMAI GTCTC 6 cut(s) 52, 84, 857, 1001, 1099, 1172
BstMBI GATC 5 cut(s) 62, 256, 437, 904, 1231
BstMWI GCNNNNNNNGC 4 cut(s) 386, 468, 571, 778
BstNSI RCATGY 1 cut(s) 599
BstPI GGTNACC 2 cut(s) 114, 489
BstSCI CCNGG 4 cut(s) 73, 74, 210, 681
BstSFI CTRYAG 4 cut(s) 463, 627, 1113, 1164
BstV1I GCAGC 6 cut(s) 449, 583, 613, 793, 1099, 1150
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BsuI GTATCC 1 cut(s) 939
BsuRI GGCC 1 cut(s) 1195
BtsCI GGATG 1 cut(s) 897
BtsIMutI CAGTG 2 cut(s) 93, 603
Cac8I GCNNGC 2 cut(s) 241, 540
CaiI CAGNNNCTG 2 cut(s) 619, 1181
Cfr9I CCCGGG 1 cut(s) 74
Csp6I GTAC 1 cut(s) 47
CviAII CATG 6 cut(s) 100, 127, 596, 1014, 1021, 1065
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 7 cut(s) 395, 498, 524, 666, 867, 1096, 1236
DpnI GATC 5 cut(s) 64, 258, 439, 906, 1233
DpnII GATC 5 cut(s) 62, 256, 437, 904, 1231
EaeI YGGCCR 1 cut(s) 1193
Eam1104I CTCTTC 3 cut(s) 855, 936, 999
EarI CTCTTC 3 cut(s) 855, 936, 999
Ecl136II GAGCTC 1 cut(s) 734
Eco130I CCWWGG 3 cut(s) 287, 484, 876
Eco24I GRGCYC 2 cut(s) 8, 736
Eco31I GGTCTC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 734
Eco57I CTGAAG 4 cut(s) 437, 551, 722, 1005
Eco88I CYCGRG 1 cut(s) 74
Eco91I GGTNACC 2 cut(s) 114, 489
EcoICRI GAGCTC 1 cut(s) 734
EcoO65I GGTNACC 2 cut(s) 114, 489
EcoRI GAATTC 1 cut(s) 374
EcoT14I CCWWGG 3 cut(s) 287, 484, 876
EcoT22I ATGCAT 1 cut(s) 1066
EcoT38I GRGCYC 2 cut(s) 8, 736
ErhI CCWWGG 3 cut(s) 287, 484, 876
Esp3I CGTCTC 2 cut(s) 52, 1001
FaeI CATG 6 cut(s) 103, 130, 599, 1017, 1024, 1068
FaqI GGGAC 1 cut(s) 240
FatI CATG 6 cut(s) 99, 126, 595, 1013, 1020, 1064
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 7 cut(s) 463, 536, 572, 627, 782, 1113, 1164
FokI GGATG 1 cut(s) 904
FriOI GRGCYC 2 cut(s) 8, 736
Fsp4HI GCNGC 7 cut(s) 463, 536, 572, 627, 782, 1113, 1164
FspBI CTAG 4 cut(s) 134, 240, 263, 474
GluI GCNGC 7 cut(s) 463, 536, 572, 627, 782, 1113, 1164
GsaI CCCAGC 1 cut(s) 1153
GsuI CTGGAG 1 cut(s) 298
HaeIII GGCC 1 cut(s) 1195
HapII CCGG 4 cut(s) 75, 212, 234, 682
Hin1II CATG 6 cut(s) 103, 130, 599, 1017, 1024, 1068
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 6 cut(s) 151, 202, 276, 791, 1170, 1185
HpaII CCGG 4 cut(s) 75, 212, 234, 682
HphI GGTGA 5 cut(s) 108, 432, 483, 826, 1214
Hpy166II GTNNAC 3 cut(s) 91, 601, 610
Hpy188I TCNGA 7 cut(s) 67, 326, 417, 642, 678, 937, 1099
Hpy188III TCNNGA 5 cut(s) 57, 206, 263, 788, 983
Hpy8I GTNNAC 3 cut(s) 91, 601, 610
Hpy99I CGWCG 3 cut(s) 92, 435, 438
HpyAV CCTTC 2 cut(s) 980, 982
HpyCH4III ACNGT 1 cut(s) 607
HpyCH4IV ACGT 2 cut(s) 87, 637
HpyCH4V TGCA 6 cut(s) 465, 542, 629, 1064, 1115, 1166
HpyF10VI GCNNNNNNNGC 4 cut(s) 386, 468, 571, 778
HpyF3I CTNAG 7 cut(s) 395, 498, 524, 666, 867, 1096, 1236
HpySE526I ACGT 2 cut(s) 87, 637
Hsp92II CATG 6 cut(s) 103, 130, 599, 1017, 1024, 1068
Kzo9I GATC 5 cut(s) 62, 256, 437, 904, 1231
LmnI GCTCC 3 cut(s) 236, 731, 1017
Lsp1109I GCAGC 6 cut(s) 449, 583, 613, 793, 1099, 1150
LweI GCATC 3 cut(s) 7, 418, 1051
MaeI CTAG 4 cut(s) 134, 240, 263, 474
MaeII ACGT 2 cut(s) 87, 637
MaeIII GTNAC 2 cut(s) 114, 489
MalI GATC 5 cut(s) 64, 258, 439, 906, 1233
MbiI CCGCTC 1 cut(s) 535
MboI GATC 5 cut(s) 62, 256, 437, 904, 1231
MboII GAAGA 7 cut(s) 404, 430, 715, 872, 950, 953, 1016
MfeI CAATTG 1 cut(s) 647
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 2 cut(s) 8, 736
MlsI TGGCCA 1 cut(s) 1195
MluCI AATT 7 cut(s) 39, 156, 292, 307, 374, 647, 1157
MluNI TGGCCA 1 cut(s) 1195
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 3 cut(s) 474, 484, 821
Mox20I TGGCCA 1 cut(s) 1195
Mph1103I ATGCAT 1 cut(s) 1066
MroXI GAANNNNTTC 1 cut(s) 707
MscI TGGCCA 1 cut(s) 1195
MseI TTAA 2 cut(s) 333, 996
MslI CAYNNNNRTG 1 cut(s) 98
Msp20I TGGCCA 1 cut(s) 1195
MspI CCGG 4 cut(s) 75, 212, 234, 682
MspR9I CCNGG 4 cut(s) 75, 76, 212, 683
MunI CAATTG 1 cut(s) 647
MwoI GCNNNNNNNGC 4 cut(s) 386, 468, 571, 778
NciI CCSGG 4 cut(s) 75, 76, 212, 683
NdeII GATC 5 cut(s) 62, 256, 437, 904, 1231
NheI GCTAGC 1 cut(s) 239
NlaIII CATG 6 cut(s) 103, 130, 599, 1017, 1024, 1068
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 2 cut(s) 114, 489
NsiI ATGCAT 1 cut(s) 1066
NspI RCATGY 1 cut(s) 599
NspV TTCGAA 1 cut(s) 349
PciI ACATGT 1 cut(s) 595
PdmI GAANNNNTTC 1 cut(s) 707
PfeI GAWTC 5 cut(s) 151, 276, 791, 1170, 1185
PflFI GACNNNGTC 1 cut(s) 212
PkrI GCNGC 7 cut(s) 464, 537, 573, 628, 783, 1114, 1165
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PscI ACATGT 1 cut(s) 595
Psp124BI GAGCTC 1 cut(s) 736
PspEI GGTNACC 2 cut(s) 114, 489
PspFI CCCAGC 1 cut(s) 1149
PspN4I GGNNCC 1 cut(s) 258
PstI CTGCAG 4 cut(s) 467, 631, 1117, 1168
PstNI CAGNNNCTG 2 cut(s) 619, 1181
PsuI RGATCY 1 cut(s) 256
PsyI GACNNNGTC 1 cut(s) 212
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
RseI CAYNNNNRTG 1 cut(s) 98
SacI GAGCTC 1 cut(s) 736
SalI GTCGAC 1 cut(s) 89
SaqAI TTAA 2 cut(s) 333, 996
SatI GCNGC 7 cut(s) 463, 536, 572, 627, 782, 1113, 1164
Sau3AI GATC 5 cut(s) 62, 256, 437, 904, 1231
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 4 cut(s) 75, 76, 212, 683
SduI GDGCHC 2 cut(s) 8, 736
SfaNI GCATC 3 cut(s) 7, 418, 1051
SfcI CTRYAG 4 cut(s) 463, 627, 1113, 1164
SfuI TTCGAA 1 cut(s) 349
SmaI CCCGGG 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 786
SmoI CTYRAG 1 cut(s) 786
Sse9I AATT 7 cut(s) 39, 156, 292, 307, 374, 647, 1157
SsiI CCGC 1 cut(s) 535
SspMI CTAG 4 cut(s) 134, 240, 263, 474
SstI GAGCTC 1 cut(s) 736
StyD4I CCNGG 4 cut(s) 73, 74, 210, 681
StyI CCWWGG 3 cut(s) 287, 484, 876
TaaI ACNGT 1 cut(s) 607
TaiI ACGT 2 cut(s) 90, 640
TaqI TCGA 6 cut(s) 56, 90, 349, 436, 592, 1029
TasI AATT 7 cut(s) 39, 156, 292, 307, 374, 647, 1157
TauI GCSGC 1 cut(s) 538
TfiI GAWTC 5 cut(s) 151, 276, 791, 1170, 1185
Tru1I TTAA 2 cut(s) 333, 996
Tru9I TTAA 2 cut(s) 333, 996
TscAI CASTG 2 cut(s) 100, 610
TseFI GTSAC 2 cut(s) 114, 489
TseI GCWGC 6 cut(s) 462, 571, 626, 781, 1112, 1163
Tsp45I GTSAC 2 cut(s) 114, 489
TspDTI ATGAA 3 cut(s) 416, 754, 837
TspMI CCCGGG 1 cut(s) 74
TspRI CASTG 2 cut(s) 100, 610
Tth111I GACNNNGTC 1 cut(s) 212
XapI RAATTY 2 cut(s) 292, 374
XbaI TCTAGA 1 cut(s) 262
XceI RCATGY 1 cut(s) 599
XmaI CCCGGG 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 707
XspI CTAG 4 cut(s) 134, 240, 263, 474
Zsp2I ATGCAT 1 cut(s) 1066
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.