Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006133

Physical Location & Seq

Genomic Coordinates Forward (+)

17961240 .. 17962984

Gene Structure 1745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43786

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGCTTGTTTTCCTTAATGGTTTGGAAGATAATTTGGTGAATGTGTTGTTCTTTTTGGTTTTCTTGGTGTTGATGATATGCTCTATCTTGGTTGCCCTGGGTTTTCGCAAGATCGATACAGATAAGTGGGAGTTTGCAAATGAAGCTTTCCTGAGGGGCAAAAGACATTTGTTGAAGAACATCCAGAGGCGCAAGTCATCTCAGTCCTTGCAGATTGGGAGCTTTACTGGGCCTTCTGCTGAAGCAGGAAGGCCTGGACTCGAAGGTGAGATAGAGTCACTGAGGAACCAGAGGAGTCTGTTAATGCAGGAGGTCGTTGACTTGCAACAGCAGCAGCGAGTTACAGTTGACCATATGAAAGCAGTGAATAAGAGGCTGCAGTCTGCTGAGCAGAGACAGCAGCAGATGGTTTCTTTCTTGGCCAAGGTGCTTCAAAACCCAGCATTCTTAGCCAGGCTTCAACGGAAGAAAGAACAGAGAGGTATAGACTCTTCCTCTGGGCAGAGGAAATTTGTTAAGGCGCGTGAACGTGAACTAGTTAGATCTGATGCTTATGTGGAAGGGAAAATTGTGAAGTACGAACCTGCTTGGAGAAACCATACTATGTCGTCTGCAGTCCCAGATGTAAATCCAGTTCCTATTGAAAACTCTCCAGATCATGGTATGCCATTTCAATGTGAGAATATTGCATTTGATGGGTTAACGGTCTCGGATGAACTAGAAGTAACACCAGAGCAAGAGGGTGAAGGGGCATCAAGCATGGTAATTGAAGATCCACTTTCCAAAGGCAAGAGTGTTGTGACCCAACAACAAGAGGTTAATCCCGAGCCTTACATCTCTTTCCAGGAGGATTTGATGAAGGAGAGGAGTCCTTTTGAGGAACTCTCATTTCCAGGGATTGAGAGCATGGTTAAACCAGATGATGTATGGAGTATGGGTTTTGATGCCAGTGCTGGTATGTCAAGTTCTAGTGGGTTTTGGAGTAATCCGATCAACTGTGATATGCCAGAGATGGGAATCCCAGACGGATTGTTTGATATCTGGGACATAGGTGCACTGCAAGCAGCCGGAGGGTCTGGCATTGATAAGTGGCCAGCTGATGAATCTGCATTCGATGAGCGTGCAAGTCAAGATGAACAACCAAAAGATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

384

Amino Acids

42.98

Weight (kDa)

4.83

Isoelectric Point (pI)

59.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03720 AT5G03720
fragaria_vesca	FvH4_6g17890
malus_domestica	MD12G1017900.v1.1 MD14G1015900.v1.1
prunus_persica	Prupe.7G117200_v2.0.a1 Prupe.7G117200_v2.0.a1 Prupe.7G117200_v2.0.a1 Prupe.7G117200_v2.0.a1 Prupe.7G117200_v2.0.a1 Prupe.7G117200_v2.0.a1
pyrus_communis	pycom03g05130 pycom12g01490 pycom14g01370
rosa_chinensis	RchiOBHm_Chr3g0472131 RchiOBHm_Chr3g0472141
rosa_laevigata	RLG00000024102
rosa_multiflora	Rmu_sc0002532.1_g000026
rosa_roxburghii	Rroxscaffold_6G00409220
rosa_rugosa	Rorug03G0122500 Rorug03G0122600
rosa_samantha	Rh3AG174300 Rh3BG199700 Rh3CG190800 Rh3CG198200 Rh3DG174800
rosa_wichuraiana	Rw3G016650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	592
AccB7I	CCANNNNNTGG	2 cut(s)	659, 1148
AccII	CGCG	1 cut(s)	523
AclWI	GGATC	1 cut(s)	767
AcoI	YGGCCR	2 cut(s)	420, 1091
AcsI	RAATTY	1 cut(s)	509
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	1 cut(s)	578
AfiI	CCNNNNNNNGG	3 cut(s)	659, 1013, 1148
AgsI	TTSAA	6 cut(s)	175, 434, 461, 644, 674, 770
AhlI	ACTAGT	1 cut(s)	535
AjnI	CCWGG	5 cut(s)	96, 253, 452, 843, 892
AluBI	AGCT	3 cut(s)	146, 222, 1097
AluI	AGCT	3 cut(s)	146, 222, 1097
Alw21I	GWGCWC	1 cut(s)	1057
Alw26I	GTCTC	2 cut(s)	388, 712
Alw44I	GTGCAC	1 cut(s)	1053
AlwI	GGATC	1 cut(s)	767
Ama87I	CYCGRG	1 cut(s)	824
AoxI	GGCC	4 cut(s)	230, 251, 420, 1091
ApaLI	GTGCAC	1 cut(s)	1053
ApeKI	GCWGC	5 cut(s)	331, 334, 376, 400, 1064
ApoI	RAATTY	1 cut(s)	509
ArsI	GACNNNNNNTTYG	2 cut(s)	1016, 1048
AspLEI	GCGC	2 cut(s)	192, 523
AspS9I	GGNCC	1 cut(s)	230
AsuHPI	GGTGA	3 cut(s)	49, 278, 755
AvaI	CYCGRG	1 cut(s)	824
AxyI	CCTNAGG	1 cut(s)	152
BaeGI	GKGCMC	1 cut(s)	1057
BalI	TGGCCA	2 cut(s)	422, 1093
BarI	GAAGNNNNNNTAC	2 cut(s)	475, 507
Bbv12I	GWGCWC	1 cut(s)	1057
BbvI	GCAGC	5 cut(s)	343, 346, 363, 412, 1076
BccI	CCATC	4 cut(s)	400, 689, 1006, 1142
BcgI	CGANNNNNNTGC	2 cut(s)	1103, 1137
BciT130I	CCWGG	5 cut(s)	98, 255, 454, 845, 894
BcoDI	GTCTC	2 cut(s)	388, 712
BcuI	ACTAGT	1 cut(s)	535
BfaI	CTAG	3 cut(s)	536, 719, 969
BfmI	CTRYAG	2 cut(s)	377, 612
BfuAI	ACCTGC	1 cut(s)	592
BglII	AGATCT	1 cut(s)	542
BisI	GCNGC	5 cut(s)	332, 335, 377, 401, 1065
BlpI	GCTNAGC	1 cut(s)	387
BlsI	GCNGC	5 cut(s)	333, 336, 378, 402, 1066
Bme1390I	CCNGG	5 cut(s)	98, 255, 454, 845, 894
BmeT110I	CYCGRG	1 cut(s)	824
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	287
BmrFI	CCNGG	5 cut(s)	98, 255, 454, 845, 894
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	3 cut(s)	538, 761, 934
BmuI	ACTGGG	1 cut(s)	237
BplI	GAGNNNNNCTC	2 cut(s)	869, 901
BpmI	CTGGAG	1 cut(s)	636
Bpu1102I	GCTNAGC	1 cut(s)	387
Bsa29I	ATCGAT	1 cut(s)	114
BsaBI	GATNNNNATC	2 cut(s)	627, 1016
BsaI	GGTCTC	1 cut(s)	712
BsaJI	CCNNGG	4 cut(s)	96, 97, 423, 893
BsaXI	ACNNNNNCTCC	2 cut(s)	922, 952
Bsc4I	CCNNNNNNNGG	3 cut(s)	659, 1013, 1148
Bse1I	ACTGG	3 cut(s)	232, 632, 948
Bse21I	CCTNAGG	1 cut(s)	152
Bse8I	GATNNNNATC	2 cut(s)	627, 1016
BseBI	CCWGG	5 cut(s)	98, 255, 454, 845, 894
BseCI	ATCGAT	1 cut(s)	114
BseDI	CCNNGG	4 cut(s)	96, 97, 423, 893
BseGI	GGATG	2 cut(s)	180, 718
BseJI	GATNNNNATC	2 cut(s)	627, 1016
BseLI	CCNNNNNNNGG	3 cut(s)	659, 1013, 1148
BseMII	CTCAG	4 cut(s)	143, 215, 272, 378
BseNI	ACTGG	3 cut(s)	232, 632, 948
BseRI	GAGGAG	2 cut(s)	307, 880
BseSI	GKGCMC	1 cut(s)	1057
BseXI	GCAGC	5 cut(s)	343, 346, 363, 412, 1076
BseYI	CCCAGC	1 cut(s)	439
Bsh1236I	CGCG	1 cut(s)	523
BshFI	GGCC	4 cut(s)	232, 253, 422, 1093
BshVI	ATCGAT	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	1057
BsiHKCI	CYCGRG	1 cut(s)	824
BsiSI	CCGG	1 cut(s)	1068
BslFI	GGGAC	2 cut(s)	602, 1058
BslI	CCNNNNNNNGG	3 cut(s)	659, 1013, 1148
BsmAI	GTCTC	2 cut(s)	388, 712
BsmFI	GGGAC	2 cut(s)	602, 1058
BsmI	GAATGC	2 cut(s)	443, 1109
BsnI	GGCC	4 cut(s)	232, 253, 422, 1093
Bso31I	GGTCTC	1 cut(s)	712
BsoBI	CYCGRG	1 cut(s)	824
Bsp1286I	GDGCHC	1 cut(s)	1057
Bsp143I	GATC	5 cut(s)	111, 542, 655, 772, 990
Bsp1720I	GCTNAGC	1 cut(s)	387
BspANI	GGCC	4 cut(s)	232, 253, 422, 1093
BspCNI	CTCAG	4 cut(s)	144, 214, 273, 379
BspDI	ATCGAT	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	523
BspLI	GGNNCC	1 cut(s)	287
BspMAI	CTGCAG	2 cut(s)	381, 616
BspMI	ACCTGC	1 cut(s)	592
BspPI	GGATC	1 cut(s)	767
BspTNI	GGTCTC	1 cut(s)	712
BsrI	ACTGG	3 cut(s)	232, 632, 948
BssECI	CCNNGG	4 cut(s)	96, 97, 423, 893
BssMI	GATC	5 cut(s)	111, 542, 655, 772, 990
BssT1I	CCWWGG	1 cut(s)	423
Bst2UI	CCWGG	5 cut(s)	98, 255, 454, 845, 894
Bst4CI	ACNGT	3 cut(s)	346, 706, 998
Bst6I	CTCTTC	1 cut(s)	496
BstC8I	GCNNGC	3 cut(s)	1062, 1095, 1122
BstDEI	CTNAG	5 cut(s)	152, 201, 281, 387, 448
BstF5I	GGATG	2 cut(s)	180, 718
BstFNI	CGCG	1 cut(s)	523
BstHHI	GCGC	2 cut(s)	192, 523
BstKTI	GATC	5 cut(s)	114, 545, 658, 775, 993
BstMAI	GTCTC	2 cut(s)	388, 712
BstMBI	GATC	5 cut(s)	111, 542, 655, 772, 990
BstMWI	GCNNNNNNNGC	5 cut(s)	143, 331, 397, 449, 1061
BstNI	CCWGG	5 cut(s)	98, 255, 454, 845, 894
BstSCI	CCNGG	5 cut(s)	96, 253, 452, 843, 892
BstSFI	CTRYAG	2 cut(s)	377, 612
BstSLI	GKGCMC	1 cut(s)	1057
BstUI	CGCG	1 cut(s)	523
BstV1I	GCAGC	5 cut(s)	343, 346, 363, 412, 1076
BstX2I	RGATCY	2 cut(s)	542, 772
BstYI	RGATCY	2 cut(s)	542, 772
Bsu15I	ATCGAT	1 cut(s)	114
Bsu36I	CCTNAGG	1 cut(s)	152
BsuRI	GGCC	4 cut(s)	232, 253, 422, 1093
BsuTUI	ATCGAT	1 cut(s)	114
BtsCI	GGATG	2 cut(s)	180, 718
BtsI	GCAGTG	2 cut(s)	369, 1055
BtsIMutI	CAGTG	4 cut(s)	278, 369, 955, 1055
BveI	ACCTGC	1 cut(s)	592
Cac8I	GCNNGC	3 cut(s)	1062, 1095, 1122
CfoI	GCGC	2 cut(s)	192, 523
Cfr13I	GGNCC	1 cut(s)	230
ClaI	ATCGAT	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	577
CviAII	CATG	3 cut(s)	659, 760, 907
CviQI	GTAC	1 cut(s)	577
DdeI	CTNAG	5 cut(s)	152, 201, 281, 387, 448
DpnI	GATC	5 cut(s)	113, 544, 657, 774, 992
DpnII	GATC	5 cut(s)	111, 542, 655, 772, 990
EaeI	YGGCCR	2 cut(s)	420, 1091
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
Eco130I	CCWWGG	1 cut(s)	423
Eco147I	AGGCCT	1 cut(s)	253
Eco31I	GGTCTC	1 cut(s)	712
Eco32I	GATATC	1 cut(s)	1039
Eco57I	CTGAAG	1 cut(s)	261
Eco81I	CCTNAGG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	824
EcoRII	CCWGG	5 cut(s)	96, 253, 452, 843, 892
EcoRV	GATATC	1 cut(s)	1039
EcoT14I	CCWWGG	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	3 cut(s)	662, 763, 910
FalI	AAGNNNNNCTT	2 cut(s)	762, 794
FaqI	GGGAC	2 cut(s)	602, 1058
FatI	CATG	3 cut(s)	658, 759, 906
FauNDI	CATATG	1 cut(s)	354
Fnu4HI	GCNGC	5 cut(s)	332, 335, 377, 401, 1065
FokI	GGATG	2 cut(s)	167, 725
Fsp4HI	GCNGC	5 cut(s)	332, 335, 377, 401, 1065
FspBI	CTAG	3 cut(s)	536, 719, 969
GlaI	GCGC	2 cut(s)	191, 522
GluI	GCNGC	5 cut(s)	332, 335, 377, 401, 1065
GsaI	CCCAGC	1 cut(s)	443
GsuI	CTGGAG	1 cut(s)	636
HaeIII	GGCC	4 cut(s)	232, 253, 422, 1093
HapII	CCGG	1 cut(s)	1068
HhaI	GCGC	2 cut(s)	192, 523
Hin1II	CATG	3 cut(s)	662, 763, 910
Hin6I	GCGC	2 cut(s)	190, 521
HinP1I	GCGC	2 cut(s)	190, 521
HincII	GTYRAC	3 cut(s)	319, 349, 702
HindII	GTYRAC	3 cut(s)	319, 349, 702
HindIII	AAGCTT	1 cut(s)	144
HinfI	GANTC	7 cut(s)	258, 275, 295, 488, 868, 1017, 1103
HpaI	GTTAAC	1 cut(s)	702
HpaII	CCGG	1 cut(s)	1068
HphI	GGTGA	3 cut(s)	49, 278, 755
Hpy166II	GTNNAC	6 cut(s)	319, 349, 527, 533, 702, 1055
Hpy188I	TCNGA	3 cut(s)	547, 712, 990
Hpy188III	TCNNGA	5 cut(s)	151, 184, 653, 824, 1130
Hpy8I	GTNNAC	6 cut(s)	319, 349, 527, 533, 702, 1055
HpyAV	CCTTC	6 cut(s)	243, 243, 257, 554, 740, 853
HpyCH4III	ACNGT	3 cut(s)	346, 706, 998
HpyCH4IV	ACGT	1 cut(s)	529
HpyF10VI	GCNNNNNNNGC	5 cut(s)	143, 331, 397, 449, 1061
HpyF3I	CTNAG	5 cut(s)	152, 201, 281, 387, 448
HpySE526I	ACGT	1 cut(s)	529
Hsp92II	CATG	3 cut(s)	662, 763, 910
HspAI	GCGC	2 cut(s)	190, 521
KspAI	GTTAAC	1 cut(s)	702
Kzo9I	GATC	5 cut(s)	111, 542, 655, 772, 990
LmnI	GCTCC	1 cut(s)	219
Lsp1109I	GCAGC	5 cut(s)	343, 346, 363, 412, 1076
LweI	GCATC	3 cut(s)	538, 761, 934
MaeI	CTAG	3 cut(s)	536, 719, 969
MaeII	ACGT	1 cut(s)	529
MaeIII	GTNAC	4 cut(s)	276, 340, 724, 799
MalI	GATC	5 cut(s)	113, 544, 657, 774, 992
MboI	GATC	5 cut(s)	111, 542, 655, 772, 990
MboII	GAAGA	5 cut(s)	38, 187, 478, 483, 782
MflI	RGATCY	2 cut(s)	542, 772
MhlI	GDGCHC	1 cut(s)	1057
MlsI	TGGCCA	2 cut(s)	422, 1093
MluCI	AATT	4 cut(s)	31, 509, 567, 765
MluNI	TGGCCA	2 cut(s)	422, 1093
MlyI	GAGTC	5 cut(s)	252, 284, 304, 482, 877
Mox20I	TGGCCA	2 cut(s)	422, 1093
MscI	TGGCCA	2 cut(s)	422, 1093
MseI	TTAA	6 cut(s)	15, 302, 516, 701, 819, 912
MslI	CAYNNNNRTG	1 cut(s)	673
Msp20I	TGGCCA	2 cut(s)	422, 1093
MspA1I	CMGCKG	1 cut(s)	1097
MspI	CCGG	1 cut(s)	1068
MspR9I	CCNGG	5 cut(s)	98, 255, 454, 845, 894
Mva1269I	GAATGC	2 cut(s)	443, 1109
MvaI	CCWGG	5 cut(s)	98, 255, 454, 845, 894
MvnI	CGCG	1 cut(s)	523
MwoI	GCNNNNNNNGC	5 cut(s)	143, 331, 397, 449, 1061
NdeI	CATATG	1 cut(s)	354
NdeII	GATC	5 cut(s)	111, 542, 655, 772, 990
NlaIII	CATG	3 cut(s)	662, 763, 910
NlaIV	GGNNCC	1 cut(s)	287
NmuCI	GTSAC	2 cut(s)	276, 799
PasI	CCCWGGG	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	253
PctI	GAATGC	2 cut(s)	443, 1109
PfeI	GAWTC	2 cut(s)	1017, 1103
PflMI	CCANNNNNTGG	2 cut(s)	659, 1148
PfoI	TCCNGGA	1 cut(s)	843
PkrI	GCNGC	5 cut(s)	333, 336, 378, 402, 1066
PleI	GAGTC	5 cut(s)	252, 283, 303, 482, 876
PpsI	GAGTC	5 cut(s)	252, 283, 303, 482, 876
Psp6I	CCWGG	5 cut(s)	96, 253, 452, 843, 892
PspFI	CCCAGC	1 cut(s)	439
PspGI	CCWGG	5 cut(s)	96, 253, 452, 843, 892
PspN4I	GGNNCC	1 cut(s)	287
PspPI	GGNCC	1 cut(s)	230
PsrI	GAACNNNNNNTAC	4 cut(s)	618, 650, 949, 981
PstI	CTGCAG	2 cut(s)	381, 616
PsuI	RGATCY	2 cut(s)	542, 772
PvuII	CAGCTG	1 cut(s)	1097
RsaI	GTAC	1 cut(s)	578
RsaNI	GTAC	1 cut(s)	577
RseI	CAYNNNNRTG	1 cut(s)	673
SaqAI	TTAA	6 cut(s)	15, 302, 516, 701, 819, 912
SatI	GCNGC	5 cut(s)	332, 335, 377, 401, 1065
Sau3AI	GATC	5 cut(s)	111, 542, 655, 772, 990
Sau96I	GGNCC	1 cut(s)	230
SchI	GAGTC	5 cut(s)	252, 284, 304, 482, 877
ScrFI	CCNGG	5 cut(s)	98, 255, 454, 845, 894
SduI	GDGCHC	1 cut(s)	1057
SfaNI	GCATC	3 cut(s)	538, 761, 934
SfcI	CTRYAG	2 cut(s)	377, 612
SmiMI	CAYNNNNRTG	1 cut(s)	673
SpeI	ACTAGT	1 cut(s)	535
Sse9I	AATT	4 cut(s)	31, 509, 567, 765
SseBI	AGGCCT	1 cut(s)	253
SspI	AATATT	1 cut(s)	685
SspMI	CTAG	3 cut(s)	536, 719, 969
StuI	AGGCCT	1 cut(s)	253
StyD4I	CCNGG	5 cut(s)	96, 253, 452, 843, 892
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	3 cut(s)	346, 706, 998
TaiI	ACGT	1 cut(s)	532
TaqI	TCGA	3 cut(s)	114, 261, 1113
TasI	AATT	4 cut(s)	31, 509, 567, 765
TfiI	GAWTC	2 cut(s)	1017, 1103
Tru1I	TTAA	6 cut(s)	15, 302, 516, 701, 819, 912
Tru9I	TTAA	6 cut(s)	15, 302, 516, 701, 819, 912
TscAI	CASTG	4 cut(s)	285, 369, 955, 1062
TseFI	GTSAC	2 cut(s)	276, 799
TseI	GCWGC	5 cut(s)	331, 334, 376, 400, 1064
Tsp45I	GTSAC	2 cut(s)	276, 799
TspDTI	ATGAA	6 cut(s)	156, 371, 729, 872, 1116, 1149
TspGWI	ACGGA	2 cut(s)	478, 1041
TspRI	CASTG	4 cut(s)	285, 369, 955, 1062
Van91I	CCANNNNNTGG	2 cut(s)	659, 1148
VneI	GTGCAC	1 cut(s)	1053
XapI	RAATTY	1 cut(s)	509
XcmI	CCANNNNNNNNNTGG	1 cut(s)	924
XspI	CTAG	3 cut(s)	536, 719, 969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.